BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00025742
         (2226 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   988   0.0  
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   975   0.0  
ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [...   965   0.0  
ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   947   0.0  
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]   946   0.0  
emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]   944   0.0  
ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis...   942   0.0  
gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus...   936   0.0  
ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Caps...   931   0.0  
ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   927   0.0  
ref|XP_007225261.1| hypothetical protein PRUPE_ppa001524mg [Prun...   927   0.0  
gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      927   0.0  
ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Th...   926   0.0  
gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]       922   0.0  
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   921   0.0  
emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]       919   0.0  
ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycoper...   917   0.0  
gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]      917   0.0  
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       916   0.0  
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   915   0.0  

>ref|XP_006469265.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Citrus sinensis]
          Length = 1132

 Score =  988 bits (2554), Expect = 0.0
 Identities = 488/666 (73%), Positives = 560/666 (84%), Gaps = 1/666 (0%)
 Frame = +3

Query: 3    SAWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDV 182
            SAWMFAS+  LTAA IR+WMG+FREIRNVAKYAARLGQSF SS ETLSV+ +EIE I DV
Sbjct: 471  SAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV 530

Query: 183  EIESNGTIYTFSDGIGKISSEFAHKVANKCGLKCTP-SAFQIRYGGYKGVVAVDPKAVKK 359
            +IE   T Y FSDGIGK+S+EFA KVA+KCGLK  P SAFQIRYGGYKGVVA DP + KK
Sbjct: 531  KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK 590

Query: 360  LYLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLD 539
            L LR SM K+ S+ TKLDVL+WSK+QPCFLNRQ+ISLLSTLG+ D IFEKKQ+EAV QLD
Sbjct: 591  LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 650

Query: 540  SILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRT 719
            +ILTDPL+A EALE+MSP E TNILKE+L+CGYKPD EPFLSMMLQTFRA+KLLELRT+T
Sbjct: 651  AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT 710

Query: 720  RIFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKV 899
            RIFIP GRSMMGCLDET TL YGQVFVQ+S  G+ QL G+S S+ +++      +V G V
Sbjct: 711  RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES-SLFSSSRSRQRFIVQGLV 769

Query: 900  VVAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWD 1079
            VVAKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD
Sbjct: 770  VVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRPHPNECSGSDLDGDIYFVCWD 829

Query: 1080 QELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELL 1259
             ELIPP+Q  PMDY  + +M LDHDVQIE+VEEYF NY++NDSLG+IAN HT FAD+E  
Sbjct: 830  DELIPPQQDPPMDYTPAQSMQLDHDVQIEDVEEYFTNYIVNDSLGIIANAHTVFADREPH 889

Query: 1260 KAESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLF 1439
            KA SE C++LA+ FSIAVDFPKTGVPAEIPPHL VKEYPDFMEK D+PTYES+ VIGKLF
Sbjct: 890  KARSEPCLQLAEKFSIAVDFPKTGVPAEIPPHLYVKEYPDFMEKPDKPTYESQNVIGKLF 949

Query: 1440 RQVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYG 1619
            R VKDIAPHTS I+ FT EVA++ YD DMEVDGFED++DDA +HKG +DYKL NLMDYYG
Sbjct: 950  RAVKDIAPHTSCIRLFTKEVARRSYDPDMEVDGFEDHIDDAIYHKGNYDYKLGNLMDYYG 1009

Query: 1620 IKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVY 1799
            IKTEAEIL GS+MK+SKSF  RRDAE+I +AVRAL+KEAR WF +K    SGS  +DD Y
Sbjct: 1010 IKTEAEILTGSIMKMSKSFTKRRDAEAIGMAVRALRKEARAWFKEK----SGSDTEDDAY 1065

Query: 1800 AKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNWSLEDQF 1979
            AKASAWYHVTYHP Y+GCY+  M+RDHFLSFPWCVYD+L+ IKK+ +       +LE QF
Sbjct: 1066 AKASAWYHVTYHPDYWGCYNHGMNRDHFLSFPWCVYDRLVEIKKDKTSIGNAFPALEQQF 1125

Query: 1980 MSSLRL 1997
               LR+
Sbjct: 1126 RQGLRM 1131


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  975 bits (2520), Expect = 0.0
 Identities = 477/667 (71%), Positives = 548/667 (82%), Gaps = 2/667 (0%)
 Frame = +3

Query: 3    SAWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDV 182
            SAWMFAS+  LTAA IR WMGDF +IRNVAKYAARLGQSF SS ETL V  +EIE I D+
Sbjct: 456  SAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDI 515

Query: 183  EIESNGTIYTFSDGIGKISSEFAHKVANKCGLKC-TPSAFQIRYGGYKGVVAVDPKAVKK 359
            EI    T Y FSDGIGKIS + AH+VA KCG K  TPSAFQIRYGGYKGVVAVDP + +K
Sbjct: 516  EIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRK 575

Query: 360  LYLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLD 539
            L LRKSM K+ S NT LDVL+WSK+QP FLNRQ+I+LLSTLGV D++FEKKQ+ AVDQLD
Sbjct: 576  LSLRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLD 635

Query: 540  SILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRT 719
            +IL DP+ A EALE+MSP E TN+LKEML+CGYKPD EPFLSMMLQTFRAAKLLELRT+T
Sbjct: 636  TILKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKT 695

Query: 720  RIFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKV 899
            RIF+P GRSMMGCLDET TLEYG+VFVQ+S  G  Q  G S     +    D  ++ GK+
Sbjct: 696  RIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKI 755

Query: 900  VVAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWD 1079
            VVAKNPCLHPGD+RVL AV+VP LHHMVDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD
Sbjct: 756  VVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWD 815

Query: 1080 QELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELL 1259
            ++LIPP+Q+ PMDY  +P  +LDHDV IEEVEEYF NY++NDSLG+IAN HT FADKE  
Sbjct: 816  RDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYD 875

Query: 1260 KAESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLF 1439
            KA  + C ELAKLFSIAVDFPKTGVPAEIP +LRVKEYPDFMEK D+PTYES+ VIGKLF
Sbjct: 876  KAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLF 935

Query: 1440 RQVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYG 1619
            R+VKDIAPH  +I+SFT +VA++ YD DMEV GFEDY+ DA+++K E+DYKL NLMDYYG
Sbjct: 936  REVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYG 995

Query: 1620 IKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVY 1799
            IKTE+EIL GS+M++SKSF+ R+DAE+I LAV++L+KEARTWF+K  S      E DDVY
Sbjct: 996  IKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGS--ETDSEADDVY 1053

Query: 1800 AKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIK-KNNSMRRKHNWSLEDQ 1976
            AKASAWYHVTYHP Y+GCY++ M RDHFLSFPWCVYDKLIH K K  S R  H  SLE +
Sbjct: 1054 AKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERR 1113

Query: 1977 FMSSLRL 1997
                LRL
Sbjct: 1114 LSQGLRL 1120


>ref|XP_002311536.1| RNA-directed RNA Polymerase family protein [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| RNA-directed RNA Polymerase
            family protein [Populus trichocarpa]
          Length = 1133

 Score =  965 bits (2494), Expect = 0.0
 Identities = 480/670 (71%), Positives = 553/670 (82%), Gaps = 4/670 (0%)
 Frame = +3

Query: 3    SAWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDV 182
            S WMFAS+  LTAA IR WMG F +IRNVA+YAARLGQSFGSSTETLSV S+EIE I D+
Sbjct: 467  SCWMFASRLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDI 526

Query: 183  EIESNGTIYTFSDGIGKISSEFAHKVANKCGLK-CTPSAFQIRYGGYKGVVAVDPKAVKK 359
            E+   GT Y FSDGIGKIS+EFA KVA KCG K  TPSAFQIRY GYKGVVAVDP + KK
Sbjct: 527  EVSRGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKK 586

Query: 360  LYLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLD 539
            L LR+SM K+ S+NTKLDVL+ SK+QPCFLNRQ+I+LLSTLGV D+ FE+KQ+EAVDQLD
Sbjct: 587  LSLRRSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLD 646

Query: 540  SILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRT 719
            ++LTDPLRA EALE+MSP E TNILKEMLLCGY+PD EPFLSMMLQTFRA+KLLELRT+T
Sbjct: 647  AMLTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKT 706

Query: 720  RIFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKV 899
            RIFIP GRSMMGCLDET TLE+GQVFV+ S      L   S  M +  G     L+ G V
Sbjct: 707  RIFIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSS-DMFSERGRGQCYLIKGSV 765

Query: 900  VVAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWD 1079
            VVAKNPCLHPGD+R+L+AVDVPALHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD
Sbjct: 766  VVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWD 825

Query: 1080 QELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELL 1259
             ELIP +Q+ PMDY   P + LDHDV IEEVEEYF NY++NDSLGVIAN HTA ADKE L
Sbjct: 826  PELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESL 885

Query: 1260 KAESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLF 1439
            KA SE C+ELA+ FSIAVDFPKTGVPAEIP +LR +EYPDFMEK D+P+YES+ VIGKLF
Sbjct: 886  KAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRNVIGKLF 945

Query: 1440 RQVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYG 1619
            R+VKDIAP TS I+SFT +VA++ YD DMEVDGFEDY+DDA+++K  +DYKL NLM+YYG
Sbjct: 946  REVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGNLMEYYG 1005

Query: 1620 IKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVY 1799
            IKTEAE+L GS MK+SKSF  +RDAE+I +AVR+LKKEAR+WF++K S      + DDV 
Sbjct: 1006 IKTEAELLSGSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGS--GLDSQADDVD 1063

Query: 1800 AKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNW---SLE 1970
            AKASAWYHVTYH  Y+GCY++ M+RDHFLSFPWCVYDKLI IK+ NS R + +    S+E
Sbjct: 1064 AKASAWYHVTYHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSARIRRSLILPSVE 1123

Query: 1971 DQFMSSLRLS 2000
             QF   L LS
Sbjct: 1124 RQFSRGLHLS 1133


>ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
          Length = 1109

 Score =  947 bits (2447), Expect = 0.0
 Identities = 464/656 (70%), Positives = 538/656 (82%), Gaps = 1/656 (0%)
 Frame = +3

Query: 3    SAWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDV 182
            SAWMFAS+  LTAA IR  MGDF +IRNVAKYAARLGQSF SS ETL V  +EIE I D+
Sbjct: 454  SAWMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDI 513

Query: 183  EIESNGTIYTFSDGIGKISSEFAHKVANKCGLK-CTPSAFQIRYGGYKGVVAVDPKAVKK 359
            E   +GT Y FSDGIGKIS+E AH+VA KCG K  TPSAFQIRYGGYKGVVAVDP + +K
Sbjct: 514  ETHRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRK 573

Query: 360  LYLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLD 539
            L LRKSM K+ S+NT LDVLSWSK++PCFLNRQ+I+LLSTLGV D++FEKKQ+EAVDQLD
Sbjct: 574  LSLRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLD 633

Query: 540  SILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRT 719
            +IL DPLRA EALE+MSP E TNILKEML+CGYKPD EPFLSMMLQTFRAAKLLELRT+T
Sbjct: 634  TILKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKT 693

Query: 720  RIFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKV 899
            RIF+P GRSMMGCLDET TLEYG+VFVQ+S  G  Q  G S     +    D  ++ GKV
Sbjct: 694  RIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKV 753

Query: 900  VVAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWD 1079
            VVAKNPCLHPGD+R+L AVDVPALHHMVDCVVFPQKG RPHP+ECSGSDLDGD+YFVCWD
Sbjct: 754  VVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWD 813

Query: 1080 QELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELL 1259
             +LIPPRQ+ PMDY  +P  +LDHDV IEEVEEYF NY+ ND LG+IAN HT FADKE  
Sbjct: 814  HDLIPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYD 873

Query: 1260 KAESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLF 1439
            KA    C ELAKLFSIA++FPKTGVPAEIP HL VKEYPDFMEK ++PTYES+ VIGKLF
Sbjct: 874  KALCPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLF 933

Query: 1440 RQVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYG 1619
            R+VKD+APH   ++SFT +VA + YD DMEVDGFEDY+ DA+++K ++D+KL +LMD  G
Sbjct: 934  REVKDVAPHNYDVRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCCG 993

Query: 1620 IKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVY 1799
            I+TE+EIL GS+MK+SKSF+ R+DAE+I+LAVR+L+KEARTWF+K  S        DDVY
Sbjct: 994  IRTESEILSGSIMKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGA--DDVY 1051

Query: 1800 AKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNWSL 1967
            A ASAWYHVTYHP Y+GCY++ M  DHFLSFPWCVYDKLI IK++    R  + SL
Sbjct: 1052 AIASAWYHVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKRDKMSIRSLHLSL 1107


>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
          Length = 654

 Score =  946 bits (2446), Expect = 0.0
 Identities = 467/664 (70%), Positives = 538/664 (81%), Gaps = 2/664 (0%)
 Frame = +3

Query: 12   MFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVEIE 191
            MFAS+  LTAA IR WMGDF +IRNVAKYAARLGQSF SS ETL V  +EIE I D+EI 
Sbjct: 1    MFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIH 60

Query: 192  SNGTIYTFSDGIGKISSEFAHKVANKCGLKC-TPSAFQIRYGGYKGVVAVDPKAVKKLYL 368
               T Y FSDGIGKIS + AH+VA KCG K  TPSAFQIRYGGYKGVVAVDP + +KL L
Sbjct: 61   KXRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSL 120

Query: 369  RKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDSIL 548
            RKSM K+ S NT LDVL+WSK+QP FLNRQ+I+LLSTLGV D++FEKKQ+ AVDQLD+IL
Sbjct: 121  RKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTIL 180

Query: 549  TDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTRIF 728
             DP+ A EALE+MSP E TN+LKEML+CGYKPD EPFLSMMLQTFRAAKLLELRT+TRIF
Sbjct: 181  KDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIF 240

Query: 729  IPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVVVA 908
            +P GRSMMGCLDET TLEYG+VFVQ+S  G  Q  G S     +    D  ++ GK+VVA
Sbjct: 241  VPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVA 300

Query: 909  KNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQEL 1088
            KNPCLHPGD+RVL AV+VP LHHMVDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD++L
Sbjct: 301  KNPCLHPGDVRVLXAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDRDL 360

Query: 1089 IPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLKAE 1268
            IPP+Q+ PMDY  +P          +EVEEYF NY++NDSLG+IAN HT FADKE  KA 
Sbjct: 361  IPPQQINPMDYTPAPT---------KEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAY 411

Query: 1269 SEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFRQV 1448
             + C ELAKLFSIAVDFPKTGVPAEIP +LRVKEYPDFMEK D+PTYES+ VIGKLFR+V
Sbjct: 412  CDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQSVIGKLFREV 471

Query: 1449 KDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGIKT 1628
            KDIAPH  +I+SFT +VA++ YD DMEV GFEDY+ DA+++K E+DYKL NLMDYYGIKT
Sbjct: 472  KDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGNLMDYYGIKT 531

Query: 1629 EAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYAKA 1808
            E+EIL GS+M++SKSF+ R+DAE+I LAV++L+KEARTWF+K  S      E DDVYAKA
Sbjct: 532  ESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGS--ETDSEADDVYAKA 589

Query: 1809 SAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIK-KNNSMRRKHNWSLEDQFMS 1985
            SAWYHVTYHP Y+GCY++ M RDHFLSFPWCVYDKLIH K K  S R  H  SLE +   
Sbjct: 590  SAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRKKMSGRSLHLSSLERRLSQ 649

Query: 1986 SLRL 1997
             LRL
Sbjct: 650  GLRL 653


>emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
          Length = 697

 Score =  944 bits (2440), Expect = 0.0
 Identities = 466/659 (70%), Positives = 538/659 (81%), Gaps = 1/659 (0%)
 Frame = +3

Query: 12   MFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDVEIE 191
            MFAS+  LTAA IR  MGDF +IRNVAKYAARLGQSF SS ETL V  +EIE I D+EI 
Sbjct: 1    MFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIEIH 60

Query: 192  SNGTIYTFSDGIGKISSEFAHKVANKCGLKC-TPSAFQIRYGGYKGVVAVDPKAVKKLYL 368
             +GT Y FSDGIGKIS+E AH+VA KCG K  TPSAFQIRYGGYKGVVAVDP + +KL L
Sbjct: 61   RDGTTYVFSDGIGKISAELAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSL 120

Query: 369  RKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDSIL 548
            RKSM K+ S+NT LDVLSWSK++PCFLNRQ+I+LLSTLGV D++FEKKQ+EAVDQLD+IL
Sbjct: 121  RKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTIL 180

Query: 549  TDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTRIF 728
             DPLRA EALE+MSP E TNILKEML+CGYKPD EPFLSMMLQTFRAAKLLELRT+TRIF
Sbjct: 181  KDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIF 240

Query: 729  IPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVVVA 908
            +P GRSMMGCLDET TLEYG+VFVQ+S  G  Q  G S     +    D  ++ GKVVVA
Sbjct: 241  VPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVA 300

Query: 909  KNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQEL 1088
            KNPCLHPGD+R+L AVDVPALHHMVDCVVFPQKG RPHP+ECSGSDLDGD+YFVCWD +L
Sbjct: 301  KNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMRPHPDECSGSDLDGDIYFVCWDHDL 360

Query: 1089 IPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLKAE 1268
            IPPRQ+ PMDY  +P  +LDHDV IEEVEEYF NY+ ND LG+IAN HT FADKE  KA 
Sbjct: 361  IPPRQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIGNDKLGIIANAHTVFADKEYDKAL 420

Query: 1269 SEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFRQV 1448
               C ELAKLFSIA++FPKTGVPAEIP HL VKEYPDFMEK ++PTYES+ VIGKLFR+V
Sbjct: 421  CPPCKELAKLFSIALEFPKTGVPAEIPFHLHVKEYPDFMEKANKPTYESQSVIGKLFREV 480

Query: 1449 KDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGIKT 1628
            KD+APH   I+SFT +VA + YD DMEVDGFEDY+ DA+++K ++D+KL +LMD YGI+T
Sbjct: 481  KDVAPHNYDIRSFTRDVAMQSYDADMEVDGFEDYVRDAFYYKSQYDFKLGSLMDCYGIRT 540

Query: 1629 EAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYAKA 1808
            E+EIL GS+MK+SKSF+ R+DAE+I+LAVR+L+KEARTWF+K  S        DDVYA A
Sbjct: 541  ESEILSGSLMKMSKSFDKRKDAEAIALAVRSLRKEARTWFNKMGSGTYAGA--DDVYAIA 598

Query: 1809 SAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNWSLEDQFMS 1985
            SAWYHVTYHP Y+GCY++ M  DHFLSFPWCVYDKLI IK+ + M   H    ED   S
Sbjct: 599  SAWYHVTYHPYYWGCYNEGMYHDHFLSFPWCVYDKLIQIKR-DKMSISHFQKPEDNLSS 656


>ref|NP_001267692.1| RNA-dependent RNA polymerase 1-like [Cucumis sativus]
            gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase
            1a [Cucumis sativus]
          Length = 1130

 Score =  942 bits (2435), Expect = 0.0
 Identities = 458/650 (70%), Positives = 537/650 (82%)
 Frame = +3

Query: 3    SAWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDV 182
            S WMFAS   + AA IR WMGDFR I+N AKYAARLGQSFGSSTE LSV SNE E I D+
Sbjct: 466  SLWMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDI 525

Query: 183  EIESNGTIYTFSDGIGKISSEFAHKVANKCGLKCTPSAFQIRYGGYKGVVAVDPKAVKKL 362
            E++     Y FSDGIGKISS+FA +VA KCG +  PSAFQIRYGGYKGVVAVDP +  KL
Sbjct: 526  EVQQGEIKYVFSDGIGKISSKFAKEVAAKCGFQAVPSAFQIRYGGYKGVVAVDPYSTIKL 585

Query: 363  YLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDS 542
             LRKSMCKF S NTKLDVL  SK+QPCFLNRQ+I+L+STLGV D IFEKKQ EAV+QLD+
Sbjct: 586  SLRKSMCKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDA 645

Query: 543  ILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTR 722
            ILTDPL+A EALE+MSP E TNILKEML CGY+PD EP+LSMMLQTFRA+KLLELRT++R
Sbjct: 646  ILTDPLKAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSR 705

Query: 723  IFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVV 902
            IFIP GR+MMGCLDET TLEYGQVFVQ+S   H  L  +SF+  N  G     ++ G V 
Sbjct: 706  IFIPNGRAMMGCLDETRTLEYGQVFVQISSGRHRNL-SESFAF-NRIGREHHLVIEGNVT 763

Query: 903  VAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQ 1082
            VAKNPCLHPGD+RVL+AV++P L+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD 
Sbjct: 764  VAKNPCLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDT 823

Query: 1083 ELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLK 1262
            ELIP RQ+ PMDY  +P   LD DV  E+++EYF NYM+NDSLG+IAN HTAFADKEL K
Sbjct: 824  ELIPSRQIPPMDYTPAPPNELDRDVTTEDIQEYFVNYMVNDSLGIIANAHTAFADKELFK 883

Query: 1263 AESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFR 1442
            A S  C+ELAKLFS+AVDFPKTGVPA IP HL VKE+PDFMEK DRP+YES +VIGKLFR
Sbjct: 884  ARSSPCLELAKLFSVAVDFPKTGVPAIIPSHLYVKEFPDFMEKPDRPSYESNKVIGKLFR 943

Query: 1443 QVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGI 1622
             VKDIAP  SHI+SFT +VA++ YD DMEV+GFEDY++DA++HK  +DYKL NL+DYYGI
Sbjct: 944  AVKDIAPTLSHIRSFTRDVARRCYDCDMEVEGFEDYVEDAFYHKSNYDYKLGNLLDYYGI 1003

Query: 1623 KTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYA 1802
            K+EAE+L GS+M++SKSF  RRDAE+I+LAVR+L+KEARTWF+ +   +S S   DD++A
Sbjct: 1004 KSEAEVLSGSIMRMSKSFTRRRDAEAINLAVRSLRKEARTWFNAREGADSNS---DDLFA 1060

Query: 1803 KASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRK 1952
            KASAWY+VTYH  Y+GCY++ M RDH+LSFPWCVYDKL+ IK+NN  RR+
Sbjct: 1061 KASAWYYVTYHHSYWGCYNEGMKRDHYLSFPWCVYDKLMQIKENNLRRRE 1110


>gb|EYU28878.1| hypothetical protein MIMGU_mgv1a000505mg [Mimulus guttatus]
          Length = 1110

 Score =  936 bits (2420), Expect = 0.0
 Identities = 460/666 (69%), Positives = 535/666 (80%), Gaps = 1/666 (0%)
 Frame = +3

Query: 3    SAWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDV 182
            S WMFA    L A  IR+WMGDF  IRNVAKYAARLGQSFGSSTETLSV   EIE I+DV
Sbjct: 457  SLWMFAPTDGLNADGIREWMGDFSSIRNVAKYAARLGQSFGSSTETLSVSKREIEEIQDV 516

Query: 183  EIESNGTIYTFSDGIGKISSEFAHKVANKCGLKC-TPSAFQIRYGGYKGVVAVDPKAVKK 359
            +   NGT YTFSDGIGKIS +FA +VA KCG++  TPSAFQIRYGGYKGVVAVDP + KK
Sbjct: 517  K---NGTEYTFSDGIGKISEDFARQVAAKCGVRSSTPSAFQIRYGGYKGVVAVDPSSKKK 573

Query: 360  LYLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLD 539
            L LR SM K+ S NTKLDVL+WSK+QPCFLNRQ+I+LLSTLGV D++FEK+Q+EAV QLD
Sbjct: 574  LSLRPSMLKYQSDNTKLDVLAWSKYQPCFLNRQIITLLSTLGVKDHVFEKRQREAVAQLD 633

Query: 540  SILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRT 719
             +L DP+RA EAL++MSP E T+ILKEML CGY+PD EPFLSMMLQTFRA+KLL+LR + 
Sbjct: 634  DVLIDPMRAQEALDLMSPGENTHILKEMLKCGYEPDGEPFLSMMLQTFRASKLLDLRVKA 693

Query: 720  RIFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKV 899
            R+FIPK R MMGCLDET  L+YGQVFV+ S      L   S+    AN   D   V GKV
Sbjct: 694  RVFIPKARQMMGCLDETGILKYGQVFVRYSGAVKRGLFDDSYDNSTANERFDP--VRGKV 751

Query: 900  VVAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWD 1079
            VVAKNPCLHPGD+RVL AVDVP L HMVDCVVFP+ GKRPHPNECSGSDLDGD+YFVCWD
Sbjct: 752  VVAKNPCLHPGDVRVLTAVDVPELRHMVDCVVFPKNGKRPHPNECSGSDLDGDIYFVCWD 811

Query: 1080 QELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELL 1259
             +LIP +QV+PMDY+ +P   LDHDV IEEVE+YF NY++NDSLG+IAN HT FADKE L
Sbjct: 812  SDLIPTKQVEPMDYNPAPTTRLDHDVTIEEVEDYFTNYIVNDSLGIIANAHTVFADKEPL 871

Query: 1260 KAESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLF 1439
             A SE C+ELA+LFSIAVDF KTG+PAEIPPHLRVKEYPDFMEK D+  Y S RVIGKLF
Sbjct: 872  MALSEPCLELARLFSIAVDFNKTGIPAEIPPHLRVKEYPDFMEKPDKINYASSRVIGKLF 931

Query: 1440 RQVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYG 1619
            R+VKDIAP TS  +SFT EVA++ YD DMEVDGFED++D+A+ HK E+DYKL NLM+YYG
Sbjct: 932  REVKDIAPQTSSFRSFTKEVARRSYDPDMEVDGFEDHIDEAFLHKTEYDYKLGNLMEYYG 991

Query: 1620 IKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVY 1799
            +KTEAE+L G +MK+SK+F+ R+DAE+I  AVR+L+ EAR+WF K         E DDVY
Sbjct: 992  VKTEAEVLSGGIMKMSKTFDRRKDAEAIGAAVRSLRNEARSWFKK-------GTEADDVY 1044

Query: 1800 AKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNWSLEDQF 1979
            AKASAWY+VTYHP YFGCY++ M RDH+LSFPWCVYDKL+ IKK+NS R     SL  QF
Sbjct: 1045 AKASAWYYVTYHPDYFGCYNEGMKRDHYLSFPWCVYDKLVKIKKDNSRRASQMASLRRQF 1104

Query: 1980 MSSLRL 1997
               +R+
Sbjct: 1105 NDRVRI 1110


>ref|XP_006306626.1| hypothetical protein CARUB_v10008144mg [Capsella rubella]
            gi|482575337|gb|EOA39524.1| hypothetical protein
            CARUB_v10008144mg [Capsella rubella]
          Length = 1107

 Score =  931 bits (2406), Expect = 0.0
 Identities = 464/657 (70%), Positives = 532/657 (80%), Gaps = 1/657 (0%)
 Frame = +3

Query: 3    SAWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDV 182
            SAWMFA +  LTAA IR WMGDF  IRNVAKYAARLGQSF SS ETL+V S+EIE I DV
Sbjct: 464  SAWMFAPRDRLTAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDV 523

Query: 183  EIESNGTIYTFSDGIGKISSEFAHKVANKCGL-KCTPSAFQIRYGGYKGVVAVDPKAVKK 359
            E     T Y FSDGIGKIS+EFA KVA KCGL + +PSAFQIRYGGYKGVVAVDP + KK
Sbjct: 524  EAMYLDTRYVFSDGIGKISAEFARKVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKK 583

Query: 360  LYLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLD 539
            L LRKSM KF S NTKLDVL+WSK+QPC+LNRQ+I+LLSTLGV D +FEKKQ+E VD+LD
Sbjct: 584  LSLRKSMSKFESGNTKLDVLAWSKYQPCYLNRQIITLLSTLGVKDNVFEKKQREVVDRLD 643

Query: 540  SILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRT 719
            +ILTDPL A+EAL +M+P E TNILK++LLCGYKPD EPFLSMMLQ FRA+KLLELRT+T
Sbjct: 644  AILTDPLEAHEALGLMAPGENTNILKQLLLCGYKPDAEPFLSMMLQNFRASKLLELRTKT 703

Query: 720  RIFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKV 899
            RIFIP GRSMMGCLDET TLEYGQV VQ S               N   P    ++ G V
Sbjct: 704  RIFIPGGRSMMGCLDETRTLEYGQVVVQYS---------------NPTMPGKRYIITGPV 748

Query: 900  VVAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWD 1079
            VVAKNPCLHPGD+RVL+AV+VPAL+HMVDCVVFPQKG RPHPNECSGSDLDGD+YF+CWD
Sbjct: 749  VVAKNPCLHPGDVRVLQAVNVPALYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFICWD 808

Query: 1080 QELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELL 1259
             ELIPPR  +PMDY   PA +LDHDV IEEVEEYFANY++NDSLG+IAN HTAFADKE L
Sbjct: 809  HELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPL 868

Query: 1260 KAESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLF 1439
            KA S+ CIELA+ FSIAVDFPKTG+ AEIP HL VKEYPDFM+K D+PTYESK VIGKLF
Sbjct: 869  KAFSDPCIELARKFSIAVDFPKTGIAAEIPQHLYVKEYPDFMDKPDKPTYESKNVIGKLF 928

Query: 1440 RQVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYG 1619
            R+VK+ AP    I+SFTL+VA K YD DMEV+GFE+Y+D+A+FHKG +DY+L NLMDYYG
Sbjct: 929  REVKERAPPLISIRSFTLDVALKSYDKDMEVEGFEEYIDEAFFHKGNYDYRLGNLMDYYG 988

Query: 1620 IKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVY 1799
            IKTEAEIL G +M++SKSF  RRDAESI  AVRAL+KEA +WF+     N+  + D D  
Sbjct: 989  IKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKEALSWFN-----NAEDKNDFDES 1043

Query: 1800 AKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNWSLE 1970
            AKASAWYHVTYH  Y+G Y++ ++RDHFLSF WCVYDKL+ IKK N  RR+   +LE
Sbjct: 1044 AKASAWYHVTYHSSYWGVYNEGLNRDHFLSFAWCVYDKLVRIKKANVGRRQRQEALE 1100


>ref|XP_004297425.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Fragaria vesca subsp.
            vesca]
          Length = 1119

 Score =  927 bits (2395), Expect = 0.0
 Identities = 464/669 (69%), Positives = 545/669 (81%), Gaps = 3/669 (0%)
 Frame = +3

Query: 3    SAWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDV 182
            S WMFA     +A +IR  MGDFR+IRNVAKYAARLGQSFGSSTETLSV  NE+E I DV
Sbjct: 458  SLWMFAPTDEDSADTIRAGMGDFRQIRNVAKYAARLGQSFGSSTETLSVGRNEMEVIPDV 517

Query: 183  EIESNGTIYTFSDGIGKISSEFAHKVANKCGLKC-TPSAFQIRYGGYKGVVAVDPKAVKK 359
             + S G  Y FSDGIGKIS++FA +VA KCG K  TPSAFQIRYGGYKGVVAVDP +  K
Sbjct: 518  TVNSCGIKYVFSDGIGKISADFAERVAKKCGYKAFTPSAFQIRYGGYKGVVAVDPTSSMK 577

Query: 360  LYLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLD 539
            L LRKSM K+ S+NTKLDVL+ SK+QPCFLNRQ+I+LLSTL V D++F KKQ+ AV QL+
Sbjct: 578  LSLRKSMSKYESENTKLDVLACSKYQPCFLNRQLITLLSTLEVQDHVFLKKQRAAVQQLN 637

Query: 540  SILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRT 719
            +ILTDPL+A EAL++MS  E+TN+LKE+L+CGYKP+ EPFLSMMLQTFRA+KLLELRT+T
Sbjct: 638  AILTDPLKAEEALDLMSAGESTNVLKELLMCGYKPNVEPFLSMMLQTFRASKLLELRTKT 697

Query: 720  RIFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVL-GK 896
            RIFIP GR+MMGCLDET TLEYGQVFVQ S     QL    F  +  +   D+  ++ GK
Sbjct: 698  RIFIPDGRAMMGCLDETRTLEYGQVFVQFSGKRRRQL----FDDICIHSSLDSCFIIEGK 753

Query: 897  VVVAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCW 1076
            VVVAKNPCLHPGD+RVLRAV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCW
Sbjct: 754  VVVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGHRPHPNECSGSDLDGDIYFVCW 813

Query: 1077 DQELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKEL 1256
            D ELIPP+Q+QPMDY  +P + +D DV IEEVEEYF NY++NDSLG+IAN HT FAD +L
Sbjct: 814  DPELIPPKQIQPMDYTPAPPIEMDQDVTIEEVEEYFVNYIVNDSLGIIANAHTVFADSKL 873

Query: 1257 LKAESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKL 1436
             KA S  C++LAKLFSIAVDFPKTGVPAEIPP L  KEYPDFMEK D+ TY S  VIG+L
Sbjct: 874  DKAMSHPCLQLAKLFSIAVDFPKTGVPAEIPPELYAKEYPDFMEKPDKRTYISHNVIGQL 933

Query: 1437 FRQVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYY 1616
            FR+VKDIAPH S I SFT +VA K YD DMEVDGFEDYL+DA++HKG +DYKL N++DYY
Sbjct: 934  FREVKDIAPHDSSIASFTRQVATKCYDPDMEVDGFEDYLEDAFYHKGNYDYKLGNMLDYY 993

Query: 1617 GIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKK-SSINSGSQEDDD 1793
            GIKTEAEIL GS+M LSKSF  RRDA++I++AV++L+KEAR WF++K + I+SG   DDD
Sbjct: 994  GIKTEAEILSGSIMTLSKSFTKRRDADAINVAVKSLRKEARAWFNEKDTGIDSG---DDD 1050

Query: 1794 VYAKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNWSLED 1973
            VYAKASAWYHVTYHP YFG Y++ M+R HF+SFPWCV+DKL HIKK    + +   SLE+
Sbjct: 1051 VYAKASAWYHVTYHPNYFGLYNEGMNRAHFISFPWCVFDKLGHIKKEKVNQARLISSLEN 1110

Query: 1974 QFMSSLRLS 2000
            +    LR S
Sbjct: 1111 RLRYGLRFS 1119


>ref|XP_007225261.1| hypothetical protein PRUPE_ppa001524mg [Prunus persica]
            gi|462422197|gb|EMJ26460.1| hypothetical protein
            PRUPE_ppa001524mg [Prunus persica]
          Length = 808

 Score =  927 bits (2395), Expect = 0.0
 Identities = 464/670 (69%), Positives = 552/670 (82%), Gaps = 4/670 (0%)
 Frame = +3

Query: 3    SAWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDV 182
            S WMFAS+  LTAA IR+WMG+F  IRNVAKYAARLGQSFGSSTETL+V  +EIE I DV
Sbjct: 155  SMWMFASRWGLTAADIREWMGNFCHIRNVAKYAARLGQSFGSSTETLNVGEHEIEVIPDV 214

Query: 183  EIESNGTIYTFSDGIGKISSEFAHKVANKCGLK-CTPSAFQIRYGGYKGVVAVDPKAVKK 359
                N   Y FSDGIGKIS++FA KVA KCG K CTPSAFQIRYGGYKGVVAVD  + KK
Sbjct: 215  VSRDNK--YVFSDGIGKISADFAKKVAVKCGFKGCTPSAFQIRYGGYKGVVAVDRTSYKK 272

Query: 360  LYLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLD 539
            L LR SM K+ S++TKLDVL+ SKFQPCFLNRQ+I+LLSTLG+ +++F +KQ+ AV QLD
Sbjct: 273  LSLRSSMYKYESEHTKLDVLACSKFQPCFLNRQLITLLSTLGIQNHVFLEKQRAAVQQLD 332

Query: 540  SILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRT 719
            ++LTDPL+A EAL++M   E+TNILKE+L+CGYKPD EPF+SMMLQTFRA+KLLELRT+T
Sbjct: 333  AMLTDPLKAQEALDMMYAGESTNILKELLMCGYKPDVEPFISMMLQTFRASKLLELRTKT 392

Query: 720  RIFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKV 899
            RI IP GR+MMGCLDET TLEYG+VFVQ S        GK      +N      ++ GKV
Sbjct: 393  RILIPDGRAMMGCLDETRTLEYGEVFVQFS--------GKRHIGSESN---QQFIIEGKV 441

Query: 900  VVAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWD 1079
            VVAKNPCLHPGD+RVL+AVDVP L+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD
Sbjct: 442  VVAKNPCLHPGDVRVLKAVDVPELYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCWD 501

Query: 1080 QELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELL 1259
             ELIP RQ+QPMDY  +P + LDH V IEEVEEYF NYM+NDSLG+IAN HTAFAD++  
Sbjct: 502  DELIPSRQIQPMDYTPAPTIALDHAVTIEEVEEYFVNYMVNDSLGIIANAHTAFADRQPS 561

Query: 1260 KAESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLF 1439
            KA S+ CIELAKLFSIAVDFPKTGVPA IP HLRVKE+PDFMEK D+PTY+S  VIG+LF
Sbjct: 562  KAMSKPCIELAKLFSIAVDFPKTGVPAIIPQHLRVKEFPDFMEKPDKPTYQSCNVIGELF 621

Query: 1440 RQVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYG 1619
            R+VKD+ PH   I+SF+ EVA++ YD DMEVDGFEDY++DA+++K  +D  L NL+DYYG
Sbjct: 622  REVKDVEPHDGSIRSFSREVARQSYDRDMEVDGFEDYIEDAFYYKSNYDSILGNLLDYYG 681

Query: 1620 IKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSS-INSGSQEDDDV 1796
            IKTEAEIL GSVMK+SKSF  RRD + I++AVR+L+KEARTWF++K++ ++SG+   DDV
Sbjct: 682  IKTEAEILSGSVMKMSKSFTKRRDIDPINMAVRSLRKEARTWFNEKATGLDSGA---DDV 738

Query: 1797 YAKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNN-SMRRKHNW-SLE 1970
            YAKASAWYHVTYHPKYFGCY++ ++RDHF+SFPWCVYDKL+HIKK   S+RR  N  SLE
Sbjct: 739  YAKASAWYHVTYHPKYFGCYNEGLNRDHFISFPWCVYDKLVHIKKEKASVRRARNLSSLE 798

Query: 1971 DQFMSSLRLS 2000
             +F + L L+
Sbjct: 799  RRFRNDLHLN 808


>gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  927 bits (2395), Expect = 0.0
 Identities = 462/668 (69%), Positives = 538/668 (80%), Gaps = 3/668 (0%)
 Frame = +3

Query: 3    SAWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDV 182
            SAWMFAS+  LTAA IR WMG+F +IRNVAKYAARLGQSF SSTETLSV  +EI  I D+
Sbjct: 460  SAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDI 519

Query: 183  EIESNGTIYTFSDGIGKISSEFAHKVANKCGLK-CTPSAFQIRYGGYKGVVAVDPKAVKK 359
            EI  +G  Y FSDGIGKIS+EFA KVA KC LK CTPSAFQIR GG+KGVVA+DP +  K
Sbjct: 520  EIMKDGIKYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWK 579

Query: 360  LYLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLD 539
            L LRKSM K+ S+NTKLDVL+WSK+QPCFLNRQ+I+LLSTLGV D  FEKKQ+E VDQL+
Sbjct: 580  LSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLN 639

Query: 540  SILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRT 719
            ++LTDPL A EALE+MSP E TNILKEMLLCGYKPD EPFLSMML+TFRA+KLLELRT+ 
Sbjct: 640  ALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKA 699

Query: 720  RIFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKV 899
            RIF+ KGRSMMGCLDET TL YGQVFVQ S                 +      +V GKV
Sbjct: 700  RIFVQKGRSMMGCLDETRTLNYGQVFVQFS----------------GSRSERRFIVQGKV 743

Query: 900  VVAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWD 1079
            +VAKNPCLHPGD+RVLRAV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGDVYFVCWD
Sbjct: 744  IVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWD 803

Query: 1080 QELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELL 1259
             ELIP +Q+ PMDY  +    LDH+V IEE+EEYF NY++NDSLG+I+N HTAFAD+E  
Sbjct: 804  PELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPD 863

Query: 1260 KAESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLF 1439
            KA S  C+ELAKLFSIAVDFPKTGVPAEIP  LRVKEYPDFMEK D+P+Y+S  VIGKLF
Sbjct: 864  KAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPSYQSHNVIGKLF 923

Query: 1440 RQVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYG 1619
            R+VK++AP+   IK  T E  ++ YD DMEV+GFEDY+DDA+FHK ++DYKL NLMDYYG
Sbjct: 924  REVKNLAPNECSIKFLTREKMQRFYDPDMEVEGFEDYIDDAFFHKSKYDYKLGNLMDYYG 983

Query: 1620 IKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVY 1799
            +KTEAEILGG +MK+S+SF  +RDAE+IS+AVR+L+KEAR+WF++K S     +E DD Y
Sbjct: 984  VKTEAEILGGGIMKMSRSFTKKRDAEAISMAVRSLRKEARSWFNEKGS--ELDEEIDDAY 1041

Query: 1800 AKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRK--HNWSLED 1973
            AKASAWY+VTYHP Y+G Y++ M+RDHFLSFPWCVYDKLI IKK  +  R+     SLE 
Sbjct: 1042 AKASAWYYVTYHPSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAAVREALDLSSLEH 1101

Query: 1974 QFMSSLRL 1997
            +F   L L
Sbjct: 1102 RFQRGLHL 1109


>ref|XP_007045552.1| RNA-dependent RNA polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697846|ref|XP_007045553.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|590697850|ref|XP_007045554.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
            gi|508709487|gb|EOY01384.1| RNA-dependent RNA polymerase
            1 isoform 1 [Theobroma cacao] gi|508709488|gb|EOY01385.1|
            RNA-dependent RNA polymerase 1 isoform 1 [Theobroma
            cacao] gi|508709489|gb|EOY01386.1| RNA-dependent RNA
            polymerase 1 isoform 1 [Theobroma cacao]
          Length = 1109

 Score =  926 bits (2393), Expect = 0.0
 Identities = 464/667 (69%), Positives = 538/667 (80%), Gaps = 2/667 (0%)
 Frame = +3

Query: 3    SAWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDV 182
            SAWMFAS+  LTAA IR WMG+F +IRNVAKYAARLGQSF SSTETLSV  +EIE I DV
Sbjct: 460  SAWMFASREGLTAADIRTWMGEFSKIRNVAKYAARLGQSFSSSTETLSVAKDEIEIIDDV 519

Query: 183  EIESNGTIYTFSDGIGKISSEFAHKVANKCGLKC-TPSAFQIRYGGYKGVVAVDPKAVKK 359
            EI+ +G  Y FSDGIGKIS++FA KVA KC L   TPSAFQIR GG+KGVVAVDP + KK
Sbjct: 520  EIKRDGINYVFSDGIGKISAKFAKKVAAKCRLNGRTPSAFQIRIGGFKGVVAVDPTSSKK 579

Query: 360  LYLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLD 539
            L LR SM K+ S+NTKLDVL+WSK+QPCFLNRQ+I+LLSTLGV D+ FE+KQ+E VDQL+
Sbjct: 580  LSLRGSMSKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDHAFEEKQREVVDQLN 639

Query: 540  SILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRT 719
            +ILTDPL+A EALE+MSP E TNILKEMLLCGY+PD EPFLSMMLQTFRA+KLLELRT++
Sbjct: 640  AILTDPLKAQEALELMSPGENTNILKEMLLCGYEPDAEPFLSMMLQTFRASKLLELRTKS 699

Query: 720  RIFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKV 899
            RIF+  GRSMMGCLDET TL+YGQVFVQVS     Q                  +V GKV
Sbjct: 700  RIFVANGRSMMGCLDETRTLDYGQVFVQVSGSRSEQ----------------RFIVQGKV 743

Query: 900  VVAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWD 1079
            VVAKNPCLHPGD+RVL AV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD
Sbjct: 744  VVAKNPCLHPGDVRVLTAVNVPDLHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWD 803

Query: 1080 QELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELL 1259
             ELIP +Q+ PMDY  +P   L+H+V IEEVEEYF NY++NDSLG+IAN HT FAD+E  
Sbjct: 804  PELIPSKQIPPMDYSPAPTKPLEHEVTIEEVEEYFTNYIVNDSLGIIANAHTVFADREPR 863

Query: 1260 KAESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLF 1439
            KA S EC  LAKLFSIAVDFPKTGVPAEIP  LRVKEYPDFMEK D+PTY+S  VIGKLF
Sbjct: 864  KAMSSECKWLAKLFSIAVDFPKTGVPAEIPQELRVKEYPDFMEKPDKPTYQSYNVIGKLF 923

Query: 1440 RQVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYG 1619
            R+VKD+AP+   I+S T E  ++ YD DMEVDG+EDY+DDA++HK  +DYKL NLM+YYG
Sbjct: 924  REVKDLAPNECFIRSLTRERLERFYDPDMEVDGYEDYVDDAFYHKSNYDYKLGNLMEYYG 983

Query: 1620 IKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVY 1799
            IKTEAEIL G +MK+S+SF  +RDAE+I +AVR+L+KEAR+WF++K   N    E DD+Y
Sbjct: 984  IKTEAEILSGGIMKMSRSFTKQRDAEAIGVAVRSLRKEARSWFNEKG--NGLDSEADDLY 1041

Query: 1800 AKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNW-SLEDQ 1976
            AKASAWYHVTYHP Y+G Y++ M+R+HFLSFPWCVYDKLI IKK  + RR     SLE  
Sbjct: 1042 AKASAWYHVTYHPSYWGLYNEGMNRNHFLSFPWCVYDKLILIKKKVTSRRNSRLSSLESL 1101

Query: 1977 FMSSLRL 1997
            F   LRL
Sbjct: 1102 FARGLRL 1108


>gb|EXB53859.1| RNA-dependent RNA polymerase 1 [Morus notabilis]
          Length = 1133

 Score =  922 bits (2384), Expect = 0.0
 Identities = 462/669 (69%), Positives = 543/669 (81%), Gaps = 4/669 (0%)
 Frame = +3

Query: 3    SAWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDV 182
            S WMFA+    +A +IR W+GDFR IRNVAKYAARLGQSFGSSTETL+V  +E E I D+
Sbjct: 468  SLWMFAAVDGHSADTIRQWIGDFRSIRNVAKYAARLGQSFGSSTETLTVDESETEVISDI 527

Query: 183  EIESNGTIYTFSDGIGKISSEFAHKVANKCGLK-CTPSAFQIRYGGYKGVVAVDPKAVKK 359
            EIE     Y FSDGIGKISS FA +VA KCGLK C PSAFQIRY GYKGVVAVDP +  K
Sbjct: 528  EIERGAVKYVFSDGIGKISSTFAKRVAKKCGLKDCVPSAFQIRYCGYKGVVAVDPTSSTK 587

Query: 360  LYLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLD 539
            L LRKSM K+ S+  KLDVL++SK Q C+LNRQ+I+LLSTLGV D +FEKKQ+EAV QL+
Sbjct: 588  LSLRKSMWKYESELHKLDVLAYSKLQHCYLNRQLITLLSTLGVGDRVFEKKQREAVQQLN 647

Query: 540  SILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRT 719
            +IL DPLRA EAL++MS  ETTNILKE+L CGY+P+ EPFLSMMLQ FRA+KL ELRT+T
Sbjct: 648  AILNDPLRAREALDLMSAGETTNILKELLSCGYQPNAEPFLSMMLQAFRASKLQELRTKT 707

Query: 720  RIFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKV 899
            RI IP GR+MMGCLDE  TLEYG+VFVQ S + H      SF ML   G     +V+G+V
Sbjct: 708  RISIPDGRAMMGCLDEMRTLEYGEVFVQFSGITHRPFFEDSF-MLGGTGSGQNYIVVGRV 766

Query: 900  VVAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWD 1079
            VVAKNPCLHPGD+RVLRAV+VPALHHMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD
Sbjct: 767  VVAKNPCLHPGDVRVLRAVNVPALHHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWD 826

Query: 1080 QELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELL 1259
             ELIP +Q +PMDY  +P   LDHDV+IEEV+EYF NY++NDSLG+IAN HTAFADKE  
Sbjct: 827  DELIPQKQFEPMDYSPAPTTRLDHDVRIEEVQEYFTNYIVNDSLGIIANAHTAFADKEPS 886

Query: 1260 KAESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLF 1439
            KA S  CIELA+LFSIAVDFPKTGVPA IP  L VKEYPDFMEKL++PTYES+ VIGKLF
Sbjct: 887  KAMSPSCIELARLFSIAVDFPKTGVPAVIPQELYVKEYPDFMEKLNKPTYESQNVIGKLF 946

Query: 1440 RQVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYG 1619
            R+VKDIAP+   +  FT EVA + YD DME DGFEDY+DDA+++K  +DYKL NL+DYYG
Sbjct: 947  REVKDIAPNVGSLHFFTKEVASRSYDPDMEYDGFEDYIDDAFYYKSNYDYKLGNLLDYYG 1006

Query: 1620 IKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKK-SSINSGSQEDDDV 1796
            IK+EAEI+GGS+M++SKSF  RRDAESI++AVRAL+KEARTWF++K SS++S +   DDV
Sbjct: 1007 IKSEAEIIGGSIMRMSKSFTKRRDAESINMAVRALRKEARTWFNEKGSSLDSAA---DDV 1063

Query: 1797 YAKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNN-SMRRKHNW-SLE 1970
            YAKASAWY+VTYH  Y+GCY++ M+RDH+LSFPWCVYDKL+ IK++  S+RR     SLE
Sbjct: 1064 YAKASAWYYVTYHHSYWGCYNEGMNRDHYLSFPWCVYDKLVQIKRSKASVRRSLQMSSLE 1123

Query: 1971 DQFMSSLRL 1997
              F   L L
Sbjct: 1124 RAFDRRLHL 1132


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like isoform X1 [Glycine
            max] gi|571439308|ref|XP_006574822.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X2 [Glycine
            max] gi|571439310|ref|XP_006574823.1| PREDICTED:
            RNA-dependent RNA polymerase 1-like isoform X3 [Glycine
            max]
          Length = 1125

 Score =  921 bits (2381), Expect = 0.0
 Identities = 468/671 (69%), Positives = 550/671 (81%), Gaps = 5/671 (0%)
 Frame = +3

Query: 3    SAWMFA-SKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRD 179
            S WMFA ++   TAA IR WMG+F +IRNVAKYAARLGQSFGSSTETLSV+ +E+E I D
Sbjct: 466  SLWMFAPTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPD 525

Query: 180  VE-IESNGTIYTFSDGIGKISSEFAHKVANKCGLKCTPSAFQIRYGGYKGVVAVDPKAVK 356
            V+ +  +G  Y FSDGIGKIS EFA KVA KCG  CTPSAFQIRYGGYKGVVAVDPK+  
Sbjct: 526  VKKLTYDGNEYVFSDGIGKISLEFAQKVAKKCGYDCTPSAFQIRYGGYKGVVAVDPKSCY 585

Query: 357  KLYLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQL 536
            KL LRKSM K+ S NTKLDVL+ SKFQPC+LNRQ+ISLLSTLG+ D +FEKKQ+E V+QL
Sbjct: 586  KLSLRKSMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQL 645

Query: 537  DSILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTR 716
            ++ILTD L+A E L++MS  E TN+LKEML+CGYKP++EPFLSMMLQTFRA+KLLELR +
Sbjct: 646  NTILTDSLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLK 705

Query: 717  TRIFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGK 896
            +RIFIPKGR+MMGCLDET TLEYGQVFVQ S   +N+L   S    + + P +  +V GK
Sbjct: 706  SRIFIPKGRAMMGCLDETRTLEYGQVFVQFS---NNRLQNLSDDFFSYDLPKNY-MVKGK 761

Query: 897  VVVAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCW 1076
            VVVAKNPCLHPGD+RVL+AVDVP L+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCW
Sbjct: 762  VVVAKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPRPHPNECSGSDLDGDIYFVCW 821

Query: 1077 DQELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKEL 1256
            D ELIP R + PMDY A   + LDHDV IEEVEEYFANY++NDSLG+IAN HT FADKE 
Sbjct: 822  DHELIPSRPIDPMDYTAPATVELDHDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEH 881

Query: 1257 LKAESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKL 1436
            LKA S++C++LA+LFS AVDFPKTGVPA IPP L VKEYPDFMEK D+PTY+S  VIGKL
Sbjct: 882  LKAMSDQCVKLARLFSTAVDFPKTGVPAVIPPELHVKEYPDFMEKPDKPTYKSHNVIGKL 941

Query: 1437 FRQVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYY 1616
            FR+VK+I+     I SFT  VA+  YD +MEVDGF DY+DDA++HK  +DYKL NLMDYY
Sbjct: 942  FREVKEISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYKLGNLMDYY 1001

Query: 1617 GIKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSS--INSGSQEDD 1790
            GIKTEAEILGG++MK+SKSFN RRDAE+I++AVR+L+KEAR WF++ SS  ++SGS    
Sbjct: 1002 GIKTEAEILGGNIMKMSKSFNKRRDAEAINMAVRSLRKEARAWFNENSSGDVDSGS---S 1058

Query: 1791 DVYAKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNN-SMRRKHNWSL 1967
            DVYAKASAWYHVTYHP Y+GCY++ M+RDH+LSF WCVY  L+ IKK   S+RR    SL
Sbjct: 1059 DVYAKASAWYHVTYHPSYWGCYNEGMNRDHYLSFSWCVYPLLVQIKKEKLSIRRS---SL 1115

Query: 1968 EDQFMSSLRLS 2000
            E  F S LRLS
Sbjct: 1116 EYSF-SGLRLS 1125


>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
          Length = 775

 Score =  919 bits (2375), Expect = 0.0
 Identities = 452/637 (70%), Positives = 526/637 (82%), Gaps = 1/637 (0%)
 Frame = +3

Query: 3    SAWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDV 182
            S WMFAS+  LTA  IR WMGDF++IRNVAKYAARLGQSFGSS ETLSV  +EI+ I DV
Sbjct: 149  SVWMFASRPGLTAYDIRTWMGDFQQIRNVAKYAARLGQSFGSSRETLSVGRHEIKYIPDV 208

Query: 183  EIESNGTIYTFSDGIGKISSEFAHKVANKCGLKCTPSAFQIRYGGYKGVVAVDPKAVKKL 362
            E+  +GT Y FSDGIGKIS++FAH+VA KCGL+ TPSAFQIRYGGYKGVVAVDP +  KL
Sbjct: 209  EV--HGTNYVFSDGIGKISADFAHRVAKKCGLQHTPSAFQIRYGGYKGVVAVDPYSPMKL 266

Query: 363  YLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDS 542
             LRKSM K+ S NTKLDVL WSK+QPC+LNRQ+++L+STLGV D +F++KQ EAV QLD+
Sbjct: 267  SLRKSMLKYESNNTKLDVLGWSKYQPCYLNRQLVTLMSTLGVKDEVFKRKQNEAVAQLDA 326

Query: 543  ILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTR 722
            IL D L+A EAL++MSP E TNILKEML CGY PD EPFLSMMLQTFRA+KLL+LRTRTR
Sbjct: 327  ILHDSLKAQEALDLMSPGENTNILKEMLNCGYLPDAEPFLSMMLQTFRASKLLDLRTRTR 386

Query: 723  IFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVL-GKV 899
            IFIPKGRSMMGCLDE+ TLEYGQVFVQ +  G  Q   +S    N +G A+   +L G V
Sbjct: 387  IFIPKGRSMMGCLDESRTLEYGQVFVQFTGAGGRQFYEESHHF-NDSGSANYNFILKGNV 445

Query: 900  VVAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWD 1079
            VVAKNPCLHPGD+RVL+AVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD
Sbjct: 446  VVAKNPCLHPGDIRVLKAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWD 505

Query: 1080 QELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELL 1259
             +LIPPRQVQPMDY  +P++ LDHDV IEEVEEYF NYM+ND LGVIAN H  FAD+E  
Sbjct: 506  PDLIPPRQVQPMDYTPAPSIQLDHDVTIEEVEEYFTNYMVNDGLGVIANAHVVFADREPN 565

Query: 1260 KAESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLF 1439
             A S+ CIELA+LFSIAVDFPKTGVPAEIP  LR KEYPDFMEK D+ TY S++VIGKLF
Sbjct: 566  MAMSDPCIELAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKTTYHSEKVIGKLF 625

Query: 1440 RQVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYG 1619
            R+VKD     S I +FT +VA++ YDTD+EVDGFEDY+D+A+ +K E+D KL NLMDYYG
Sbjct: 626  REVKDKTTQASSITTFTRDVARRSYDTDLEVDGFEDYIDEAFDYKSEYDKKLGNLMDYYG 685

Query: 1620 IKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVY 1799
            IKTEAE L G +MK SK+F+ RRDAE+I +AVR+L+KEARTWF ++S I       DD+ 
Sbjct: 686  IKTEAETLSGGIMKASKTFDRRRDAEAIGVAVRSLRKEARTWFKRRSDI-------DDLL 738

Query: 1800 AKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYD 1910
            AKASAWYHV YHP Y+GCY++ + RDHF+SFPWCVYD
Sbjct: 739  AKASAWYHVAYHPTYWGCYNEGLKRDHFISFPWCVYD 775


>ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
            gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase
            [Solanum lycopersicum]
          Length = 1114

 Score =  917 bits (2371), Expect = 0.0
 Identities = 448/649 (69%), Positives = 529/649 (81%)
 Frame = +3

Query: 3    SAWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDV 182
            S WMFAS+  LTA  IR WMGDF +I+NVAKYAARLGQSFGSS ETLSV  +EIE I DV
Sbjct: 456  SVWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDV 515

Query: 183  EIESNGTIYTFSDGIGKISSEFAHKVANKCGLKCTPSAFQIRYGGYKGVVAVDPKAVKKL 362
            ++  +GT Y FSDGIGKIS +FAH+VA+KCGL+ TPSAFQIRYGGYKGVV VDP +  KL
Sbjct: 516  KV--HGTSYVFSDGIGKISGDFAHRVASKCGLQYTPSAFQIRYGGYKGVVGVDPDSSMKL 573

Query: 363  YLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDS 542
             LRKSM K+ S N KLDVL WSK+QPC+LNRQ+I+LLSTLGV D + E+KQKEAVDQLD+
Sbjct: 574  SLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDA 633

Query: 543  ILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTR 722
            IL D L+A EALE+MSP E TNILK ML CGYKPD EPFLSMMLQTFRA+KLL+LRTR+R
Sbjct: 634  ILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSR 693

Query: 723  IFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKVV 902
            IFIP GR+MMGCLDE+ TLEYGQVFVQ +  GH +         N+       ++ G VV
Sbjct: 694  IFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNFILKGNVV 753

Query: 903  VAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWDQ 1082
            VAKNPCLHPGD+RVL+AV+V ALHHMVDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWDQ
Sbjct: 754  VAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWDQ 813

Query: 1083 ELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELLK 1262
            ++IPPRQVQPM+Y  +P++ LDHDV IEEVEEYF NY++NDSLG+IAN H  FAD+E   
Sbjct: 814  DMIPPRQVQPMEYPPAPSIQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVFADREPDM 873

Query: 1263 AESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLFR 1442
            A S+ C +LA+LFSIAVDFPKTGVPAEIP  LR KEYPDFM+K D+ +Y S+RVIGKLFR
Sbjct: 874  AMSDPCKKLAELFSIAVDFPKTGVPAEIPSQLRPKEYPDFMDKPDKTSYISERVIGKLFR 933

Query: 1443 QVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYGI 1622
            +VKD AP  S I +FT +VA++ YD DMEVDGFEDY+D+A+ +K E+D KL NLMDYYGI
Sbjct: 934  KVKDKAPQASSIATFTRDVARRSYDADMEVDGFEDYIDEAFDYKTEYDNKLGNLMDYYGI 993

Query: 1623 KTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVYA 1802
            KTEAEIL G +MK SK+F+ R+DAE+IS+AVRAL+KEAR WF +++ I       DD+  
Sbjct: 994  KTEAEILSGGIMKASKTFDRRKDAEAISVAVRALRKEARAWFKRRNDI-------DDMLP 1046

Query: 1803 KASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRR 1949
            KASAWYHVTYHP Y+GCY+Q + R HF+SFPWCVYD+LI IKK+ +  R
Sbjct: 1047 KASAWYHVTYHPTYWGCYNQGLKRAHFISFPWCVYDQLIQIKKDKARNR 1095


>gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
          Length = 1110

 Score =  917 bits (2370), Expect = 0.0
 Identities = 458/668 (68%), Positives = 534/668 (79%), Gaps = 3/668 (0%)
 Frame = +3

Query: 3    SAWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDV 182
            SAWMFAS+  LTAA IR WMG+F +IRNVAKYAARLGQSF SSTETLSV  +EI  I D+
Sbjct: 460  SAWMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDI 519

Query: 183  EIESNGTIYTFSDGIGKISSEFAHKVANKCGLK-CTPSAFQIRYGGYKGVVAVDPKAVKK 359
            EI  +G  Y F DGIGKIS+EFA KVA KC LK CTPSAFQIR GG+KGVVA+DP +  K
Sbjct: 520  EIMKDGIKYVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWK 579

Query: 360  LYLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLD 539
            L LRKSM K+ S+NTKLDVL+WSK+QPCFLNRQ+I+LLSTLGV DY FEKKQ+E VDQL+
Sbjct: 580  LSLRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLN 639

Query: 540  SILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRT 719
            ++LTDPL A EALE+MSP E TNILKEMLLCGYKPD EPFLSMML+TFRA+KLLELRT+ 
Sbjct: 640  ALLTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKA 699

Query: 720  RIFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKV 899
            RIF+ KGRSMMGCLDET TL YGQVFVQ S                 +      +V GKV
Sbjct: 700  RIFVQKGRSMMGCLDETRTLNYGQVFVQFS----------------GSRSERRFIVQGKV 743

Query: 900  VVAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWD 1079
            +VAKNPCLHPGD+RVLRAV+VP LHHMVDCVVFPQKG RPHPNECSGSDLDGDVYFVCWD
Sbjct: 744  IVAKNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTRPHPNECSGSDLDGDVYFVCWD 803

Query: 1080 QELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELL 1259
             ELIP +Q+ PMDY  +    LDH+V IEE+EEYF NY++NDSLG+I+N HTAFAD+E  
Sbjct: 804  PELIPYKQIDPMDYSPASTTKLDHEVTIEEIEEYFTNYIVNDSLGIISNAHTAFADREPG 863

Query: 1260 KAESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLF 1439
            KA S  C+ELAKLFSIAVDFPKTGVPAEIP  LRVKE+PDFMEK D+P+Y+S  VIGKLF
Sbjct: 864  KAMSRPCLELAKLFSIAVDFPKTGVPAEIPQELRVKEFPDFMEKPDKPSYQSYNVIGKLF 923

Query: 1440 RQVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYG 1619
            R+VK++AP+   IK  T E  K+ YD DMEV+GF DY+DDA+F+K ++DYKL NLMDYYG
Sbjct: 924  REVKNLAPNECSIKLLTREKMKRFYDPDMEVEGFVDYIDDAFFYKSKYDYKLGNLMDYYG 983

Query: 1620 IKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVY 1799
            +KTEAEIL G +MK+S+SF  +RDAESIS+AVR+L+KEAR+WF++K S     +E DD Y
Sbjct: 984  VKTEAEILSGGIMKMSRSFTKKRDAESISMAVRSLRKEARSWFNEKGS--ELDEEIDDAY 1041

Query: 1800 AKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRK--HNWSLED 1973
            AKASAWY+VTYH  Y+G Y++ M+RDHFLSFPWCVYDKLI IKK  +  R+     SLE 
Sbjct: 1042 AKASAWYYVTYHHSYWGQYNEGMNRDHFLSFPWCVYDKLIQIKKEKAALREALDLSSLEH 1101

Query: 1974 QFMSSLRL 1997
            +F     L
Sbjct: 1102 RFQRGFHL 1109


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  916 bits (2368), Expect = 0.0
 Identities = 458/666 (68%), Positives = 532/666 (79%), Gaps = 3/666 (0%)
 Frame = +3

Query: 3    SAWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDV 182
            S WMFAS+  LTA  IR WMGDFR+IRNVAKYAARLGQSFGSS ETLSV  +E+E I DV
Sbjct: 456  SVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDV 515

Query: 183  EIESNGTIYTFSDGIGKISSEFAHKVANKCGLKCTPSAFQIRYGGYKGVVAVDPKAVKKL 362
                +GT Y FSDGIGKIS++FAH+V  KCGL+ TPS+FQIRYGGYKGVVAVDP +  KL
Sbjct: 516  ACSLHGTNYIFSDGIGKISADFAHRVTIKCGLQYTPSSFQIRYGGYKGVVAVDPYSSMKL 575

Query: 363  YLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLDS 542
             LRKSM K+ S N KLDVL WSK+QPC+LNRQ+++LLSTLGV D + E+KQ EAVDQLD+
Sbjct: 576  SLRKSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLDA 635

Query: 543  ILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRTR 722
            IL D L+A EALE+MSP E TNILKEML CGY PD EPFLSMMLQTFRA+KLL+LRTRTR
Sbjct: 636  ILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRTR 695

Query: 723  IFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVL-GKV 899
            IFIP GR+MMGCLDE+ TLEYGQVFVQ S  G  Q   +S    N +G A+   +L G V
Sbjct: 696  IFIPNGRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPF-NDSGSANCDFILKGNV 754

Query: 900  VVAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWD 1079
            VVAKNPCLHPGD+RVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGD+YFVCWD
Sbjct: 755  VVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDIYFVCWD 814

Query: 1080 QELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELL 1259
             +LIPPRQVQ MDY  +P   LDHDV IEEVEEYF NY+INDSLG+IAN H  FAD+E  
Sbjct: 815  PDLIPPRQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVFADREPD 874

Query: 1260 KAESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLF 1439
             A S+ C +LA+LFSIAVDFPKTGVPAEIP  LR KEYPDFMEK D+PTY S++VIGKLF
Sbjct: 875  MAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEKVIGKLF 934

Query: 1440 RQVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYG 1619
            ++VK+  P  S I +FT +VA+K YD+DM VDGFEDY+D+A+++K E+D KL NLMDYYG
Sbjct: 935  QKVKNKTPQASSIATFTRDVARKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGNLMDYYG 994

Query: 1620 IKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVY 1799
            IKTEAEIL G +MK SK+F+ R+DAE+I +AVR L+KEAR WF ++S I       DD+ 
Sbjct: 995  IKTEAEILSGGIMKASKTFDRRKDAEAIGVAVRCLRKEARAWFKRRSDI-------DDML 1047

Query: 1800 AKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRR--KHNWSLED 1973
            AKASAWYHVTYH  Y+G Y++ + RDHF+SFPWCVYD+LI IKK  + +R   H  SL  
Sbjct: 1048 AKASAWYHVTYHHTYWGLYNEGLKRDHFISFPWCVYDQLIQIKKAKARKRPVPHLSSLGS 1107

Query: 1974 QFMSSL 1991
            Q    L
Sbjct: 1108 QLSRKL 1113


>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
            gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
            1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1097

 Score =  915 bits (2364), Expect = 0.0
 Identities = 458/657 (69%), Positives = 530/657 (80%), Gaps = 1/657 (0%)
 Frame = +3

Query: 3    SAWMFASKGPLTAASIRDWMGDFREIRNVAKYAARLGQSFGSSTETLSVYSNEIERIRDV 182
            SAWMFA    LT+A IR WMGDF  IRNVAKYAARLGQSF SS ETL+V S+EIE I DV
Sbjct: 455  SAWMFAPIDGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDV 514

Query: 183  EIESNGTIYTFSDGIGKISSEFAHKVANKCGL-KCTPSAFQIRYGGYKGVVAVDPKAVKK 359
            EI S GT Y FSDGIGKIS+EFA +VA KCGL + +PSAFQIRYGGYKGVVAVDP + KK
Sbjct: 515  EIISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKK 574

Query: 360  LYLRKSMCKFTSQNTKLDVLSWSKFQPCFLNRQVISLLSTLGVSDYIFEKKQKEAVDQLD 539
            L LRKSM KF S+NTKLDVL+WSK+QPC++NRQ+I+LLSTLG+ D +FEKKQ+E VD+LD
Sbjct: 575  LSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGIKDSVFEKKQREVVDRLD 634

Query: 540  SILTDPLRAYEALEIMSPAETTNILKEMLLCGYKPDQEPFLSMMLQTFRAAKLLELRTRT 719
            +ILTDPL A+EAL +M+P E TNILK ++LCGYKPD EPFLSMMLQ FRA+KLLELRT+T
Sbjct: 635  AILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKT 694

Query: 720  RIFIPKGRSMMGCLDETATLEYGQVFVQVSRLGHNQLCGKSFSMLNANGPADTTLVLGKV 899
            RIFI  GRSMMGCLDET TLEYGQV VQ S               +   P    ++ G V
Sbjct: 695  RIFISGGRSMMGCLDETRTLEYGQVVVQYS---------------DPMRPGRRFIITGPV 739

Query: 900  VVAKNPCLHPGDMRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDVYFVCWD 1079
            VVAKNPCLHPGD+RVL AV+VPAL+HMVDCVVFPQKG RPHPNECSGSDLDGD+YFVCWD
Sbjct: 740  VVAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLRPHPNECSGSDLDGDIYFVCWD 799

Query: 1080 QELIPPRQVQPMDYDASPAMLLDHDVQIEEVEEYFANYMINDSLGVIANTHTAFADKELL 1259
            QELIPPR  +PMDY   PA +LDHDV IEEVEEYFANY++NDSLG+IAN HTAFADKE L
Sbjct: 800  QELIPPRTSEPMDYTPEPAQILDHDVTIEEVEEYFANYIVNDSLGIIANAHTAFADKEPL 859

Query: 1260 KAESEECIELAKLFSIAVDFPKTGVPAEIPPHLRVKEYPDFMEKLDRPTYESKRVIGKLF 1439
            KA S+ CIELA+ FS+AVDFPKTGV AEIP HL VKEYPDFMEK D+PTYESK VIGKLF
Sbjct: 860  KAFSDPCIELARKFSVAVDFPKTGVAAEIPQHLHVKEYPDFMEKPDKPTYESKNVIGKLF 919

Query: 1440 RQVKDIAPHTSHIKSFTLEVAKKLYDTDMEVDGFEDYLDDAYFHKGEFDYKLANLMDYYG 1619
            R+VK+ AP    IKSFTL+VA K YD DMEVDGFE+Y+D+A+ +K  +D+KL NLMDYYG
Sbjct: 920  REVKERAPPLISIKSFTLDVALKSYDKDMEVDGFEEYVDEAFHYKANYDFKLGNLMDYYG 979

Query: 1620 IKTEAEILGGSVMKLSKSFNMRRDAESISLAVRALKKEARTWFDKKSSINSGSQEDDDVY 1799
            IKTEAEIL G +M++SKSF  RRDAESI  AVRAL+KE  + F+        + E+++  
Sbjct: 980  IKTEAEILSGGIMRMSKSFTKRRDAESIGRAVRALRKETLSLFN--------ATEEENES 1031

Query: 1800 AKASAWYHVTYHPKYFGCYHQEMSRDHFLSFPWCVYDKLIHIKKNNSMRRKHNWSLE 1970
            AKASAWYHVTYH  Y+G Y++ ++RDHFLSF WCVYDKL+ IKK N+ RR+   +LE
Sbjct: 1032 AKASAWYHVTYHSSYWGLYNEGLNRDHFLSFAWCVYDKLVRIKKTNAGRRQRQETLE 1088