BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00021663
         (1210 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [The...   422   e-115
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   419   e-114
ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   418   e-114
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   418   e-114
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr...   409   e-111
ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [A...   407   e-111
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-...   407   e-111
ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prun...   406   e-110
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-...   405   e-110
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-...   405   e-110
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-...   395   e-107
emb|CAD20832.1| sigma factor [Spinacia oleracea]                      389   e-105
gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus...   389   e-105
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu...   387   e-105
ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-...   382   e-103
ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC ...   377   e-102
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp....   376   e-101
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi...   374   e-101
ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Caps...   372   e-100
ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha...   372   e-100

>ref|XP_007012219.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
            gi|508782582|gb|EOY29838.1| RNApolymerase sigma-subunit
            C, putative [Theobroma cacao]
          Length = 848

 Score =  422 bits (1085), Expect = e-115
 Identities = 215/357 (60%), Positives = 276/357 (77%), Gaps = 9/357 (2%)
 Frame = +3

Query: 111  DVITVRSGRKEERISKRKRALENAAKLS-YLSPT--------MKRISKANFSSNKRSKRV 263
            D I V S +K++R   R+RALEN   +S  L P+          ++S A   S+ RS+R+
Sbjct: 491  DNIVVCSRKKKQRKKIRERALENPTIISTQLMPSNTLHGRFQKPKVSSAKRVSDSRSRRL 550

Query: 264  IVAKNESEMSRGVKEVVNLERIRTMLEEETGRVASFKSWAEAARIDERLLKERLHFGWYC 443
             +A+NE+EMS+GVK V NLERIRT LEEETGR AS   WAEAA + E++L++ L FGWYC
Sbjct: 551  RIARNEAEMSKGVKVVANLERIRTTLEEETGRAASLSCWAEAAGVSEKVLQQHLRFGWYC 610

Query: 444  RDKLLKSTRSLVLFLARNYRGVGISLEDLLQAGYMGVLLGAERYDHTRGYRFSTYVQYWI 623
            RD+LL+STRSLVL+ ARNYRG+GI+ EDL+QAG +GVL GAER+DHTRGYRFSTYVQ+WI
Sbjct: 611  RDELLRSTRSLVLYFARNYRGLGIAHEDLIQAGSLGVLQGAERFDHTRGYRFSTYVQFWI 670

Query: 624  RKSMSAYVAQNSRGIQLPATLARAIYQIQKARKTLHSLYGRYPDDNEIATFTGLSLAKIR 803
            RKS+S  VA+++RGIQ+P TL+RAI QIQKARK L   +G+YPD++ IA FTGLSLAKIR
Sbjct: 671  RKSVSRIVARHARGIQVPCTLSRAIVQIQKARKALSKSHGKYPDEDAIAKFTGLSLAKIR 730

Query: 804  LASKCPRIVGSIDQKLGDDINIKFMEFTPDRSVEIPDEVVMKQHMQKDVYKLLEDLDQRE 983
             A+KC R+VGSIDQK+GD +N K++EF PD SV  P++ VM+QHM++D++ LL  LD RE
Sbjct: 731  SANKCMRVVGSIDQKIGDCMNAKYLEFIPDLSVRSPEKTVMRQHMKEDIHDLLNGLDARE 790

Query: 984  KQVLILRQGLWDGQCKSLEEIGKLFNVTKEWIRKIEKSAYNKVRKEENLSNLSHYLD 1154
            +QV++LR GL     KSLEEIG+LF+V+KEWIR+IE  A  K+R +E   NLSHYLD
Sbjct: 791  RQVMVLRYGLKGSPPKSLEEIGRLFHVSKEWIRRIEMKAMKKLRDKETCRNLSHYLD 847


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 560

 Score =  419 bits (1077), Expect = e-114
 Identities = 212/372 (56%), Positives = 285/372 (76%), Gaps = 14/372 (3%)
 Frame = +3

Query: 81   VNGAA-NDEVGDVITVRSGRKEERISKRKRALENAAKLSYLSPTMK-------------R 218
            +NG + N+++   + V + +KEER S+R+RA   +A+  + SP++               
Sbjct: 193  INGTSINNQIK--VVVHTAKKEERKSRRERA---SARKGHKSPSLPLPSRPIQSGSEKPT 247

Query: 219  ISKANFSSNKRSKRVIVAKNESEMSRGVKEVVNLERIRTMLEEETGRVASFKSWAEAARI 398
            +S    +S  +S+R+I+A+NE+EM+RG+K + +LE+IRT LEEET RV S   WAEAA +
Sbjct: 248  VSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAGL 307

Query: 399  DERLLKERLHFGWYCRDKLLKSTRSLVLFLARNYRGVGISLEDLLQAGYMGVLLGAERYD 578
            D ++L+++L FGWYCRD+L+KSTRSLVL+ ARNYRG GI+LEDLLQAG +GVL GAER+D
Sbjct: 308  DVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLGVLEGAERFD 367

Query: 579  HTRGYRFSTYVQYWIRKSMSAYVAQNSRGIQLPATLARAIYQIQKARKTLHSLYGRYPDD 758
            HTRGYRFSTYVQYWIRKSMS  V++ +RGIQ+P TL+RAIYQIQKARK L +  G+YPDD
Sbjct: 368  HTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQKARKALTTSNGKYPDD 427

Query: 759  NEIATFTGLSLAKIRLASKCPRIVGSIDQKLGDDINIKFMEFTPDRSVEIPDEVVMKQHM 938
            +EIA +TGLSLAKI  AS+C R+VGSIDQK+G+ +N K++EF PD SV+ P+EVVM+QHM
Sbjct: 428  DEIAKYTGLSLAKIESASRCLRVVGSIDQKIGESLNAKYLEFLPDTSVQSPEEVVMRQHM 487

Query: 939  QKDVYKLLEDLDQREKQVLILRQGLWDGQCKSLEEIGKLFNVTKEWIRKIEKSAYNKVRK 1118
             +D++ LL  LD RE+QVLILR GL D Q KSLEEIG+ F+V+KEW+R++EK    ++R 
Sbjct: 488  IQDMHNLLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHFHVSKEWVRRLEKRVMTRLRN 547

Query: 1119 EENLSNLSHYLD 1154
            EE   NL HY++
Sbjct: 548  EETCRNLRHYIN 559


>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|296081598|emb|CBI20603.3| unnamed protein product
            [Vitis vinifera]
          Length = 561

 Score =  418 bits (1074), Expect = e-114
 Identities = 213/367 (58%), Positives = 273/367 (74%), Gaps = 9/367 (2%)
 Frame = +3

Query: 84   NGAANDEVGDVITVRSGRKEERISKRKRALENA---------AKLSYLSPTMKRISKANF 236
            NG  +D + D + VRSG+KEER SKR+RALE A         +K     P    +S    
Sbjct: 196  NGTVDDHL-DKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKR 254

Query: 237  SSNKRSKRVIVAKNESEMSRGVKEVVNLERIRTMLEEETGRVASFKSWAEAARIDERLLK 416
            + N R KR++ AKNE+EMS+GVK V NLERIR  LEEE G VAS  +WAEAA +D+++L+
Sbjct: 255  TLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQ 314

Query: 417  ERLHFGWYCRDKLLKSTRSLVLFLARNYRGVGISLEDLLQAGYMGVLLGAERYDHTRGYR 596
            ++L FGWYCRD+LL+ST SLVL++ARNYRG+G++ ED+LQAG +GVL GAER+DHT+GYR
Sbjct: 315  QQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYR 374

Query: 597  FSTYVQYWIRKSMSAYVAQNSRGIQLPATLARAIYQIQKARKTLHSLYGRYPDDNEIATF 776
            FSTYVQYWIRKSMS  VA+++RG+++P TL RAI QIQKARK L+  +GRYPDDNEIA F
Sbjct: 375  FSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKF 434

Query: 777  TGLSLAKIRLASKCPRIVGSIDQKLGDDINIKFMEFTPDRSVEIPDEVVMKQHMQKDVYK 956
            TGLSLAKIR A  C R+VGS DQ   D      +EFTPD S++ P+E  M+Q  +KD++ 
Sbjct: 435  TGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHN 494

Query: 957  LLEDLDQREKQVLILRQGLWDGQCKSLEEIGKLFNVTKEWIRKIEKSAYNKVRKEENLSN 1136
            LL+ LD RE+Q+L+LR G  + Q KSLEEIG+ FNV+KEWIRK+EK+A   +R EE   N
Sbjct: 495  LLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQN 554

Query: 1137 LSHYLDL 1157
            L HY+D+
Sbjct: 555  LRHYVDV 561


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  418 bits (1074), Expect = e-114
 Identities = 213/367 (58%), Positives = 273/367 (74%), Gaps = 9/367 (2%)
 Frame = +3

Query: 84   NGAANDEVGDVITVRSGRKEERISKRKRALENA---------AKLSYLSPTMKRISKANF 236
            NG  +D + D + VRSG+KEER SKR+RALE A         +K     P    +S    
Sbjct: 246  NGTVDDHL-DKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTIRKGPGRPSVSTVKR 304

Query: 237  SSNKRSKRVIVAKNESEMSRGVKEVVNLERIRTMLEEETGRVASFKSWAEAARIDERLLK 416
            + N R KR++ AKNE+EMS+GVK V NLERIR  LEEE G VAS  +WAEAA +D+++L+
Sbjct: 305  TLNSRRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGHVASLSNWAEAAGVDKKVLQ 364

Query: 417  ERLHFGWYCRDKLLKSTRSLVLFLARNYRGVGISLEDLLQAGYMGVLLGAERYDHTRGYR 596
            ++L FGWYCRD+LL+ST SLVL++ARNYRG+G++ ED+LQAG +GVL GAER+DHT+GYR
Sbjct: 365  QQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQAGNLGVLQGAERFDHTKGYR 424

Query: 597  FSTYVQYWIRKSMSAYVAQNSRGIQLPATLARAIYQIQKARKTLHSLYGRYPDDNEIATF 776
            FSTYVQYWIRKSMS  VA+++RG+++P TL RAI QIQKARK L+  +GRYPDDNEIA F
Sbjct: 425  FSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKARKALYKSHGRYPDDNEIAKF 484

Query: 777  TGLSLAKIRLASKCPRIVGSIDQKLGDDINIKFMEFTPDRSVEIPDEVVMKQHMQKDVYK 956
            TGLSLAKIR A  C R+VGS DQ   D      +EFTPD S++ P+E  M+Q  +KD++ 
Sbjct: 485  TGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTSIKSPEEGFMQQCKRKDIHN 544

Query: 957  LLEDLDQREKQVLILRQGLWDGQCKSLEEIGKLFNVTKEWIRKIEKSAYNKVRKEENLSN 1136
            LL+ LD RE+Q+L+LR G  + Q KSLEEIG+ FNV+KEWIRK+EK+A   +R EE   N
Sbjct: 545  LLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWIRKLEKTALANLRDEEICQN 604

Query: 1137 LSHYLDL 1157
            L HY+D+
Sbjct: 605  LRHYVDV 611


>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
            gi|557553989|gb|ESR64003.1| hypothetical protein
            CICLE_v10007968mg [Citrus clementina]
          Length = 534

 Score =  409 bits (1052), Expect = e-111
 Identities = 209/372 (56%), Positives = 280/372 (75%), Gaps = 9/372 (2%)
 Frame = +3

Query: 69   EDSPVNGAANDEVGDVITVRSGRKEERISKRKRALENAAKLSYLSPTMKRISKA------ 230
            E+  +N + +  +G ++ V S RK +R  K  R  E + + S LS   + + +       
Sbjct: 164  EEQKMNDSRDYHMGKIL-VPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTI 222

Query: 231  ---NFSSNKRSKRVIVAKNESEMSRGVKEVVNLERIRTMLEEETGRVASFKSWAEAARID 401
                 + N R +R+++A+NE+EMS+GV+ V NLERI+T LE+E+G+ AS   WA+AA + 
Sbjct: 223  FSPERALNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVS 282

Query: 402  ERLLKERLHFGWYCRDKLLKSTRSLVLFLARNYRGVGISLEDLLQAGYMGVLLGAERYDH 581
            ER+LK+ L FGWYCR++L+KSTR LVLFLARNYRG+GI   DLLQAG +GVL GAER+DH
Sbjct: 283  ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342

Query: 582  TRGYRFSTYVQYWIRKSMSAYVAQNSRGIQLPATLARAIYQIQKARKTLHSLYGRYPDDN 761
            TRGY+FSTYVQYWIRKS+S  VA+++RGI++P  L R I +IQKARK L + +G+YP+D 
Sbjct: 343  TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402

Query: 762  EIATFTGLSLAKIRLASKCPRIVGSIDQKLGDDINIKFMEFTPDRSVEIPDEVVMKQHMQ 941
            EIA +TGLSLA+IR AS+C RIVGSIDQK+GD +N K++EF PDRSV+ P E+VM+QHM+
Sbjct: 403  EIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMK 462

Query: 942  KDVYKLLEDLDQREKQVLILRQGLWDGQCKSLEEIGKLFNVTKEWIRKIEKSAYNKVRKE 1121
            KDV+++LE LD RE+QVL+LR GL D + KSLEEIGKLF+V+KEWIRK+EK A  K+R  
Sbjct: 463  KDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522

Query: 1122 ENLSNLSHYLDL 1157
            E   +LSH+L L
Sbjct: 523  ETCRDLSHFLVL 534


>ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [Amborella trichopoda]
            gi|548857444|gb|ERN15250.1| hypothetical protein
            AMTR_s00056p00209700 [Amborella trichopoda]
          Length = 529

 Score =  407 bits (1046), Expect = e-111
 Identities = 204/363 (56%), Positives = 272/363 (74%), Gaps = 11/363 (3%)
 Frame = +3

Query: 99   DEVGDVITVRSGRKEERISKRKRALENAAKLSYLSPTMKRISKANFS-----------SN 245
            DE  D   V SG+K ER ++R+RAL+       +  ++KR+ K+  S            N
Sbjct: 166  DEQADGYIVSSGKKVERKAQRERALKKVTDEPIVCSSLKRVKKSTKSINAALTHKGHPGN 225

Query: 246  KRSKRVIVAKNESEMSRGVKEVVNLERIRTMLEEETGRVASFKSWAEAARIDERLLKERL 425
             +S+  + A++E EMSRGV+EV  LE+IR  LEE  GR ASF  WAEAA I+E++LK++L
Sbjct: 226  SKSRSHLRAQSEVEMSRGVQEVAKLEKIRANLEENLGRDASFSVWAEAAGINEKVLKQQL 285

Query: 426  HFGWYCRDKLLKSTRSLVLFLARNYRGVGISLEDLLQAGYMGVLLGAERYDHTRGYRFST 605
            HFGW+CRDKLL+STR LV++LA++YRG GI  EDLLQAG +GVL GAER+DHTRGYRFST
Sbjct: 286  HFGWFCRDKLLRSTRPLVMYLAKSYRGRGIGFEDLLQAGSLGVLQGAERFDHTRGYRFST 345

Query: 606  YVQYWIRKSMSAYVAQNSRGIQLPATLARAIYQIQKARKTLHSLYGRYPDDNEIATFTGL 785
            YVQYWIRKS+SA VA++SRG+Q+P  L + + Q  KA++ LH ++GR+P + EIA FTGL
Sbjct: 346  YVQYWIRKSLSALVARHSRGVQIPMALNKVLNQTVKAKRALHQMHGRHPREVEIAEFTGL 405

Query: 786  SLAKIRLASKCPRIVGSIDQKLGDDINIKFMEFTPDRSVEIPDEVVMKQHMQKDVYKLLE 965
            SL  +RLA+KC R+ GSIDQ++GD+    +ME T D  +E P+++VMKQHM++ ++++L 
Sbjct: 406  SLVNVRLANKCLRVHGSIDQRIGDNWGATYMEVTADTFIETPEKMVMKQHMREAIHEVLV 465

Query: 966  DLDQREKQVLILRQGLWDGQCKSLEEIGKLFNVTKEWIRKIEKSAYNKVRKEENLSNLSH 1145
            +L  REKQVL+LR GLWDG+CKSLEEIG+L+NVTKEWIRKIEK A  KVRKEE   NL+ 
Sbjct: 466  NLHPREKQVLMLRYGLWDGRCKSLEEIGRLYNVTKEWIRKIEKMALEKVRKEEVQCNLNF 525

Query: 1146 YLD 1154
            +L+
Sbjct: 526  FLN 528


>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum]
          Length = 555

 Score =  407 bits (1045), Expect = e-111
 Identities = 206/355 (58%), Positives = 270/355 (76%), Gaps = 9/355 (2%)
 Frame = +3

Query: 111  DVITVRSGRKEERISKRKRALENAAKLSYLSPTMKRISK----ANFSSNKRS-----KRV 263
            D + VRS +K+ER S+R RA  NA  +  + P  K I +      F S KR+     KR 
Sbjct: 199  DKVVVRSRKKQERKSRRNRASRNANDIITVQPHTKNIQEDLQQPKFYSGKRTQASRNKRQ 258

Query: 264  IVAKNESEMSRGVKEVVNLERIRTMLEEETGRVASFKSWAEAARIDERLLKERLHFGWYC 443
             +AKNE+EMSRGVK V  LERIR++LEEETGRVA+F SWAEAA I+++ L++RLHFGWYC
Sbjct: 259  KIAKNEAEMSRGVKLVAQLERIRSILEEETGRVATFSSWAEAAGIEQKELQQRLHFGWYC 318

Query: 444  RDKLLKSTRSLVLFLARNYRGVGISLEDLLQAGYMGVLLGAERYDHTRGYRFSTYVQYWI 623
            RD+LLKSTRSLVL+LARNYRG+G++ EDL+QAG MGVL GA R+DHTRGY+FSTYVQYWI
Sbjct: 319  RDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWI 378

Query: 624  RKSMSAYVAQNSRGIQLPATLARAIYQIQKARKTLHSLYGRYPDDNEIATFTGLSLAKIR 803
            RKS+S  VAQ++RG+++P T+ + I QI KARKTL   +G++P D+EIA FTGLS A+I 
Sbjct: 379  RKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSRSHGKFPADDEIAKFTGLSTARIA 438

Query: 804  LASKCPRIVGSIDQKLGDDINIKFMEFTPDRSVEIPDEVVMKQHMQKDVYKLLEDLDQRE 983
            +ASKC R+VGSIDQK+GD I+ K +E TPD+S+  P+E VM+Q +  ++Y LLE LD +E
Sbjct: 439  MASKCLRVVGSIDQKVGDCISAKVLELTPDKSITSPEETVMRQDIVDNMYSLLESLDPKE 498

Query: 984  KQVLILRQGLWDGQCKSLEEIGKLFNVTKEWIRKIEKSAYNKVRKEENLSNLSHY 1148
            +QV+  R GL   Q KSLEEIG+L+ V+KEWIR+IE+ A  K+R  +   +++HY
Sbjct: 499  QQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERRALTKLRNADYFQHITHY 553


>ref|XP_007222923.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
            gi|462419859|gb|EMJ24122.1| hypothetical protein
            PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  406 bits (1043), Expect = e-110
 Identities = 211/376 (56%), Positives = 287/376 (76%), Gaps = 9/376 (2%)
 Frame = +3

Query: 54   LPVIP-EDSPVNGAANDEVGDVITVRSGRKEERISKRKRALENAAKLSYLSPTM---KRI 221
            +P +P E+  +    ++ VG++I VRSG+KEER S RKR  +NA   S   P     K +
Sbjct: 181  IPTVPVEEGKMERKEDNNVGEII-VRSGKKEERRS-RKRTSDNAIVSSNSLPPKTIWKGL 238

Query: 222  SKANFSSNKR-----SKRVIVAKNESEMSRGVKEVVNLERIRTMLEEETGRVASFKSWAE 386
             K   SS KR     S+R+ ++KNE+EMS GVK + +LERI+  LE+ETG+VA+ + WAE
Sbjct: 239  KKPTLSSGKRASNYRSRRLTISKNEAEMSIGVKVIADLERIKETLEKETGKVATLRCWAE 298

Query: 387  AARIDERLLKERLHFGWYCRDKLLKSTRSLVLFLARNYRGVGISLEDLLQAGYMGVLLGA 566
            AA + E++L + L FGWYC+D+L++STRSLVL+LARNYRG+G++L+DL+QAG +G+L GA
Sbjct: 299  AAGVHEKVLLQHLRFGWYCQDELIRSTRSLVLYLARNYRGLGVALDDLMQAGNLGLLQGA 358

Query: 567  ERYDHTRGYRFSTYVQYWIRKSMSAYVAQNSRGIQLPATLARAIYQIQKARKTLHSLYGR 746
            ER+DH+RGYRFSTYVQYWIRKSMS  VAQ++RG+Q+P TL++AI QIQKARK  ++ + +
Sbjct: 359  ERFDHSRGYRFSTYVQYWIRKSMSRLVAQHARGVQIPFTLSKAINQIQKARKANYNSHMK 418

Query: 747  YPDDNEIATFTGLSLAKIRLASKCPRIVGSIDQKLGDDINIKFMEFTPDRSVEIPDEVVM 926
            YPDD EIA  TGLSLA+IR AS C R+VGS+D K+ +  +  +MEFTPD S++ P+E VM
Sbjct: 419  YPDDEEIAKITGLSLARIRSASTCLRVVGSVDHKMWESSDGTYMEFTPDTSLKSPEETVM 478

Query: 927  KQHMQKDVYKLLEDLDQREKQVLILRQGLWDGQCKSLEEIGKLFNVTKEWIRKIEKSAYN 1106
            +QHM+KD++ LL+ L+ RE+QVL+LR GL +   KSLEEIG+LF+V+KEWIRKIEK A  
Sbjct: 479  RQHMKKDIHDLLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVSKEWIRKIEKKALM 538

Query: 1107 KVRKEENLSNLSHYLD 1154
            K+R EE+   LSHYL+
Sbjct: 539  KLRVEESHKYLSHYLN 554


>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
            lycopersicum]
          Length = 551

 Score =  405 bits (1042), Expect = e-110
 Identities = 205/355 (57%), Positives = 271/355 (76%), Gaps = 9/355 (2%)
 Frame = +3

Query: 111  DVITVRSGRKEERISKRKRALENAAKLSYLSPTMKRISK----ANFSSNKRS-----KRV 263
            D + VRS +K+ER+S+RKRA  NA  +  + P  K I +      F S KR+     KR 
Sbjct: 195  DKVVVRSRKKQERMSRRKRASRNANDIITVQPHTKNIQEDLQQLKFYSGKRTHASRTKRQ 254

Query: 264  IVAKNESEMSRGVKEVVNLERIRTMLEEETGRVASFKSWAEAARIDERLLKERLHFGWYC 443
             +AKNE+EMS+GVK V  LERIR++LEEETG+VA+F SWA+AA I+++ L++ LHFGWYC
Sbjct: 255  KIAKNEAEMSKGVKLVAQLERIRSILEEETGQVATFSSWAKAAGIEQKELQQHLHFGWYC 314

Query: 444  RDKLLKSTRSLVLFLARNYRGVGISLEDLLQAGYMGVLLGAERYDHTRGYRFSTYVQYWI 623
            RD+LLKSTRSLVL+LARNYRG+G++ EDL+QAG MGVL GA R+DHTRGY+FSTYVQYWI
Sbjct: 315  RDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGVLQGAVRFDHTRGYKFSTYVQYWI 374

Query: 624  RKSMSAYVAQNSRGIQLPATLARAIYQIQKARKTLHSLYGRYPDDNEIATFTGLSLAKIR 803
            RKS+S  VAQ++RG+++P T+ + I QI KARKTL   +G++P D+EIA FTGLS A+I 
Sbjct: 375  RKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSRSHGKFPADDEIAKFTGLSTARIA 434

Query: 804  LASKCPRIVGSIDQKLGDDINIKFMEFTPDRSVEIPDEVVMKQHMQKDVYKLLEDLDQRE 983
            +ASKC R+VGSIDQK+GD IN K +E TPD+SV  P+E VM+Q +  ++Y LLE LD +E
Sbjct: 435  MASKCLRVVGSIDQKVGDCINAKVLELTPDKSVTSPEEFVMRQDIVDNMYALLESLDPKE 494

Query: 984  KQVLILRQGLWDGQCKSLEEIGKLFNVTKEWIRKIEKSAYNKVRKEENLSNLSHY 1148
            +QV+  R GL   Q KSLEEIG+L+ V+KEWIR+IE+ A  K+R  +   +++HY
Sbjct: 495  QQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIERRALTKLRSADYFQHITHY 549


>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
          Length = 534

 Score =  405 bits (1040), Expect = e-110
 Identities = 207/372 (55%), Positives = 279/372 (75%), Gaps = 9/372 (2%)
 Frame = +3

Query: 69   EDSPVNGAANDEVGDVITVRSGRKEERISKRKRALENAAKLSYLSPTMKRISK------- 227
            E+  ++ + +  +G ++ V S RK +R  K  R  E + +   LS   + + +       
Sbjct: 164  EEQKMDDSRDYHMGKIL-VPSKRKGKRKLKTARVSEESIETYLLSLPSEALQEGLKQPTI 222

Query: 228  --ANFSSNKRSKRVIVAKNESEMSRGVKEVVNLERIRTMLEEETGRVASFKSWAEAARID 401
              A  + N R +R+++A+NE+EMS+GV+ V NLERI+T LE+E+G+ A    WA+AA + 
Sbjct: 223  FSAERALNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVS 282

Query: 402  ERLLKERLHFGWYCRDKLLKSTRSLVLFLARNYRGVGISLEDLLQAGYMGVLLGAERYDH 581
            ER+LK+ L FGWYCR++L+KSTR LVLFLARNYRG+GI   DLLQAG +GVL GAER+DH
Sbjct: 283  ERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDH 342

Query: 582  TRGYRFSTYVQYWIRKSMSAYVAQNSRGIQLPATLARAIYQIQKARKTLHSLYGRYPDDN 761
            TRGY+FSTYVQYWIRKS+S  VA+++RGI++P  L R I +IQKARK L + +G+YP+D 
Sbjct: 343  TRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDI 402

Query: 762  EIATFTGLSLAKIRLASKCPRIVGSIDQKLGDDINIKFMEFTPDRSVEIPDEVVMKQHMQ 941
            EIA +TGLSLA+IR AS+C RIVGSIDQK+GD +N K++EF PDRSV+ P E+VM+QHM+
Sbjct: 403  EIAKYTGLSLAEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMK 462

Query: 942  KDVYKLLEDLDQREKQVLILRQGLWDGQCKSLEEIGKLFNVTKEWIRKIEKSAYNKVRKE 1121
            KDV+++LE LD RE+QVL+LR GL D + KSLEEIGKLF+V+KEWIRK+EK A  K+R  
Sbjct: 463  KDVFRILESLDSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDS 522

Query: 1122 ENLSNLSHYLDL 1157
            E   +LSH+L L
Sbjct: 523  ETCRDLSHFLVL 534


>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
            subsp. vesca]
          Length = 545

 Score =  395 bits (1015), Expect = e-107
 Identities = 203/351 (57%), Positives = 272/351 (77%), Gaps = 8/351 (2%)
 Frame = +3

Query: 123  VRSGRKEERISKRKRALENAAKLSYLSPTMK--------RISKANFSSNKRSKRVIVAKN 278
            VRSG+KEE+ S RKR   ++ K S   P  +          S    +SN RS+R+++AKN
Sbjct: 193  VRSGKKEEQKS-RKRTSYDSKKFSGTLPVKQMREGFKKPNPSSVRRASNSRSRRLMMAKN 251

Query: 279  ESEMSRGVKEVVNLERIRTMLEEETGRVASFKSWAEAARIDERLLKERLHFGWYCRDKLL 458
            E+EMS GVK + +LER++  LE+ETG+V + + WAEAA +DE++L+++LHFGWYC+D+L+
Sbjct: 252  EAEMSVGVKVIADLERLKVTLEKETGKVPTLRCWAEAAGVDEKVLQQQLHFGWYCQDELV 311

Query: 459  KSTRSLVLFLARNYRGVGISLEDLLQAGYMGVLLGAERYDHTRGYRFSTYVQYWIRKSMS 638
            +STRSLVL+LARNYRG+G++L+DLLQAG +G+L GAER+D +RGYRFSTYVQYWIRKSMS
Sbjct: 312  RSTRSLVLYLARNYRGLGVALDDLLQAGNLGLLQGAERFDPSRGYRFSTYVQYWIRKSMS 371

Query: 639  AYVAQNSRGIQLPATLARAIYQIQKARKTLHSLYGRYPDDNEIATFTGLSLAKIRLASKC 818
              VAQ++RGI++P TL++AI +IQKARK  ++ + +YPDD EIA  TGLSLAKI  AS+C
Sbjct: 372  RLVAQHARGIKIPNTLSKAINRIQKARKANYNSHMKYPDDEEIAKITGLSLAKISSASRC 431

Query: 819  PRIVGSIDQKLGDDINIKFMEFTPDRSVEIPDEVVMKQHMQKDVYKLLEDLDQREKQVLI 998
             R+VGS+D K+ +     +MEFTPD +VE P+E VM+QHM+ D++ LLE L+ REK+VL 
Sbjct: 432  LRVVGSVDHKIWECSAGTYMEFTPDIAVETPEESVMRQHMKNDIHVLLEGLNSREKKVLA 491

Query: 999  LRQGLWDGQCKSLEEIGKLFNVTKEWIRKIEKSAYNKVRKEENLSNLSHYL 1151
            LR GL     KSLEEIG+LF+V+KEWIRKIEK+A  K+R EE+  NLSHYL
Sbjct: 492  LRYGLNYCNPKSLEEIGRLFHVSKEWIRKIEKNALTKLRNEESNKNLSHYL 542


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score =  389 bits (999), Expect = e-105
 Identities = 200/382 (52%), Positives = 280/382 (73%), Gaps = 8/382 (2%)
 Frame = +3

Query: 36   LNMSVPLPVIPEDSPVNGAANDEVGDVITVRSGRKEERISKRKRALENA--------AKL 191
            ++MS    +I ED   N   ++E+   + V S RKEER  +++R L+ +        ++ 
Sbjct: 169  IDMSDLPGLITEDGKANVRKDNELKKKL-VFSKRKEERKLRQERRLQASTSKRCACKSES 227

Query: 192  SYLSPTMKRISKANFSSNKRSKRVIVAKNESEMSRGVKEVVNLERIRTMLEEETGRVASF 371
            S  S     +S A   +  R +R I+AKNE+EMSRG+K V  LE+++  LE+ETG+  S 
Sbjct: 228  SIESSIHHVVSTAAKKTKARGRRAIIAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSL 287

Query: 372  KSWAEAARIDERLLKERLHFGWYCRDKLLKSTRSLVLFLARNYRGVGISLEDLLQAGYMG 551
              WAEAA IDE++L+  LHFGWYCRD+LLKS RSLVL+L+R YRG+G++ EDL+QAG +G
Sbjct: 288  NCWAEAAGIDEKVLQHDLHFGWYCRDELLKSGRSLVLYLSRYYRGLGVAHEDLMQAGNIG 347

Query: 552  VLLGAERYDHTRGYRFSTYVQYWIRKSMSAYVAQNSRGIQLPATLARAIYQIQKARKTLH 731
            +L GAER+DHTRGY+FSTYVQYWIRK+MS  V+++ RGI++P TL+  I ++QKARK L 
Sbjct: 348  ILQGAERFDHTRGYQFSTYVQYWIRKAMSQLVSRHGRGIKVPTTLSTTINRVQKARKILK 407

Query: 732  SLYGRYPDDNEIATFTGLSLAKIRLASKCPRIVGSIDQKLGDDINIKFMEFTPDRSVEIP 911
               G++PDD E++  TGLSL KI+ A  C RIVGS+DQK+G  IN+K++E TPD ++E+P
Sbjct: 408  RSQGKHPDDVEVSKSTGLSLDKIKSADNCLRIVGSLDQKVGHFINMKYLECTPDTALEMP 467

Query: 912  DEVVMKQHMQKDVYKLLEDLDQREKQVLILRQGLWDGQCKSLEEIGKLFNVTKEWIRKIE 1091
            ++ VMKQHM+ DV+KLL++LD +E++VLI R GL +G C SL E+GK+F+V+KEWIRK+E
Sbjct: 468  EKTVMKQHMRNDVHKLLQELDPKERRVLIHRYGL-EGHCMSLHEVGKVFDVSKEWIRKME 526

Query: 1092 KSAYNKVRKEENLSNLSHYLDL 1157
            K A  K+R E+N +NL HYL+L
Sbjct: 527  KRALTKLRTEQNQTNLKHYLNL 548


>gb|EYU20393.1| hypothetical protein MIMGU_mgv1a018845mg [Mimulus guttatus]
          Length = 478

 Score =  389 bits (998), Expect = e-105
 Identities = 198/356 (55%), Positives = 265/356 (74%), Gaps = 9/356 (2%)
 Frame = +3

Query: 117  ITVRSGRKEERISKRKRALENAAKLSYLSPTMKRISK---------ANFSSNKRSKRVIV 269
            + V SG+KE R  +RKR  +N +     SP+ K ISK         A  +   R+KR   
Sbjct: 123  VFVHSGKKELRKLRRKRTSDNESPTIQESPS-KTISKDLQQLKFAIAGRTPRSRNKRQKT 181

Query: 270  AKNESEMSRGVKEVVNLERIRTMLEEETGRVASFKSWAEAARIDERLLKERLHFGWYCRD 449
            A+NE++MS GVK V  LE+IRT LE+ETG++AS  +WAEAA I ++ L++ LH+GW+CRD
Sbjct: 182  ARNEADMSSGVKRVAELEKIRTKLEQETGQIASLSNWAEAAGIKKKELQQHLHYGWHCRD 241

Query: 450  KLLKSTRSLVLFLARNYRGVGISLEDLLQAGYMGVLLGAERYDHTRGYRFSTYVQYWIRK 629
            +LL+ST SLVLF+ARNY G+G++ EDL+QAG +GVL GAER+D +RGY+FSTYVQYWIRK
Sbjct: 242  ELLRSTHSLVLFIARNYSGLGVAFEDLIQAGNIGVLQGAERFDQSRGYKFSTYVQYWIRK 301

Query: 630  SMSAYVAQNSRGIQLPATLARAIYQIQKARKTLHSLYGRYPDDNEIATFTGLSLAKIRLA 809
            SMS  VA+++RG+++P TL++ I Q+ KARK L +  G+YPDD EIA FTGLS+AK+  A
Sbjct: 302  SMSTLVAKHARGVRIPCTLSKVINQVHKARKALTTSNGKYPDDYEIAKFTGLSVAKVMSA 361

Query: 810  SKCPRIVGSIDQKLGDDINIKFMEFTPDRSVEIPDEVVMKQHMQKDVYKLLEDLDQREKQ 989
            SKC R+VGSIDQK+G+ +  K+ME   D S+  P+E V++QHM  DV  LL  L+ REKQ
Sbjct: 362  SKCLRVVGSIDQKIGEYMTTKYMEILSDTSMPSPEEAVIRQHMLNDVSTLLNGLEPREKQ 421

Query: 990  VLILRQGLWDGQCKSLEEIGKLFNVTKEWIRKIEKSAYNKVRKEENLSNLSHYLDL 1157
            V+ILR GL + QCKSLEEIG+LF V+KEWIRKIE+SA  K+R E++L  L+HY+ +
Sbjct: 422  VIILRFGLGNCQCKSLEEIGRLFRVSKEWIRKIERSALIKLRNEDSLKILNHYVHM 477


>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
            gi|222854562|gb|EEE92109.1| hypothetical protein
            POPTR_0006s25090g [Populus trichocarpa]
          Length = 559

 Score =  387 bits (994), Expect = e-105
 Identities = 201/370 (54%), Positives = 271/370 (73%), Gaps = 8/370 (2%)
 Frame = +3

Query: 72   DSPVNGAANDEVGDVITVRSGRKEERISKRKRAL-ENAAKLSYLSPTMKRIS----KANF 236
            +S  +G   D  G  + VR+G+KEER  +R+RA  +N  K + LS   K +     K  F
Sbjct: 191  ESKTDGMLGDLTGKTV-VRTGKKEERKFRRERAASDNGKKTTSLSLPSKTVQNNLPKPTF 249

Query: 237  ---SSNKRSKRVIVAKNESEMSRGVKEVVNLERIRTMLEEETGRVASFKSWAEAARIDER 407
               +S+  S+R ++A+NE++M+RGVK   +LERIRT LEEETG+V S   WAEA  +D++
Sbjct: 250  VKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSCWAEATGLDKK 309

Query: 408  LLKERLHFGWYCRDKLLKSTRSLVLFLARNYRGVGISLEDLLQAGYMGVLLGAERYDHTR 587
            +L+++L FGWYCRD+L+K+T SLVL++ARNYRG+GI++EDL+QAG +G+L GAER+D TR
Sbjct: 310  VLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLLQGAERFDPTR 369

Query: 588  GYRFSTYVQYWIRKSMSAYVAQNSRGIQLPATLARAIYQIQKARKTLHSLYGRYPDDNEI 767
            GYRFSTYVQYWIRKSM   V +++RGIQ+P  L+R+I +IQKARK L + +GRYPDD E+
Sbjct: 370  GYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALSNSHGRYPDDWEV 429

Query: 768  ATFTGLSLAKIRLASKCPRIVGSIDQKLGDDINIKFMEFTPDRSVEIPDEVVMKQHMQKD 947
            A FTGLSLAKI  A KC R+V S+DQK+G+    K+ EF PD S++ P+E VM+QHM+++
Sbjct: 430  AKFTGLSLAKIESAQKCLRVVASLDQKIGEGHYAKYSEFIPDMSIQNPEEAVMRQHMREE 489

Query: 948  VYKLLEDLDQREKQVLILRQGLWDGQCKSLEEIGKLFNVTKEWIRKIEKSAYNKVRKEEN 1127
            +Y LL  LD REKQV++LR G  D Q KSL EIG+LF V+KE +RKIEK    K+R E  
Sbjct: 490  IYDLLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLFRVSKERVRKIEKKIMIKLRDEGI 549

Query: 1128 LSNLSHYLDL 1157
              NLS Y+ L
Sbjct: 550  RRNLSRYMIL 559


>ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
            gi|449507267|ref|XP_004162982.1| PREDICTED: RNA
            polymerase sigma factor sigC-like [Cucumis sativus]
          Length = 559

 Score =  382 bits (981), Expect = e-103
 Identities = 200/371 (53%), Positives = 270/371 (72%), Gaps = 9/371 (2%)
 Frame = +3

Query: 69   EDSPVNGAANDEVGDVITVRSGRKEERISKRKRALENAAKLSYLSPTMKRISKA------ 230
            ED  VN   ND+  D +TV S +K  R S +KRA++NA K++    T + + +       
Sbjct: 191  EDHNVNQKTNDQ-NDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTV 249

Query: 231  ---NFSSNKRSKRVIVAKNESEMSRGVKEVVNLERIRTMLEEETGRVASFKSWAEAARID 401
                 SSN   +R+IVA NE+EMS GVK V NLERIR  LE+E+GR+AS   WAEAA +D
Sbjct: 250  FSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVD 309

Query: 402  ERLLKERLHFGWYCRDKLLKSTRSLVLFLARNYRGVGISLEDLLQAGYMGVLLGAERYDH 581
             + L+++L FG +CRD+LL+ST SLV+FLA+ YR  G+ +EDL+QAG +GVL G ER+D 
Sbjct: 310  IKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDP 369

Query: 582  TRGYRFSTYVQYWIRKSMSAYVAQNSRGIQLPATLARAIYQIQKARKTLHSLYGRYPDDN 761
             RG+R STY+QYWIRKSMS  VA+NSRGIQ+P +L +AI QIQKARK L+    RY DD 
Sbjct: 370  KRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDD- 428

Query: 762  EIATFTGLSLAKIRLASKCPRIVGSIDQKLGDDINIKFMEFTPDRSVEIPDEVVMKQHMQ 941
            +IA  TGL LAK+R+AS C ++VGS DQK+GD +N+K+MEFT D S++ P+E V ++ M+
Sbjct: 429  DIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMK 488

Query: 942  KDVYKLLEDLDQREKQVLILRQGLWDGQCKSLEEIGKLFNVTKEWIRKIEKSAYNKVRKE 1121
            KD++ +L+ L+ RE+QVL+LR GL D + KSLEEIGKL +++KEW+RKIEK A  K++ E
Sbjct: 489  KDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNE 548

Query: 1122 ENLSNLSHYLD 1154
            E + +LSHYLD
Sbjct: 549  ETVKHLSHYLD 559


>ref|XP_003551127.1| PREDICTED: RNA polymerase sigma factor sigC isoform X1 [Glycine max]
          Length = 551

 Score =  377 bits (967), Expect = e-102
 Identities = 196/362 (54%), Positives = 269/362 (74%), Gaps = 9/362 (2%)
 Frame = +3

Query: 99   DEVGDVITVRSGRKEERISKRKRALENAAKLSYLSPTMKR---------ISKANFSSNKR 251
            D+  D + V+S +K+E  ++RKR   + A +S  S T+K           S    + N +
Sbjct: 191  DDYKDKVVVQSSKKKENKTRRKREFVSTA-VSSQSLTLKANQEDLLGFSASLVKRAPNTK 249

Query: 252  SKRVIVAKNESEMSRGVKEVVNLERIRTMLEEETGRVASFKSWAEAARIDERLLKERLHF 431
            +KR++VAK E+EMS+GVK +  LE+IRT +EE+T RVAS  +WAEA+ +DE++L++ LH 
Sbjct: 250  NKRILVAKREAEMSKGVKVLAELEKIRTAIEEDTKRVASLSTWAEASGVDEKVLQKLLHR 309

Query: 432  GWYCRDKLLKSTRSLVLFLARNYRGVGISLEDLLQAGYMGVLLGAERYDHTRGYRFSTYV 611
            G+YC+D+L++STRSLVL+LAR YRG+GI+L+DLLQAGY+GVL GAER+D TRGY+FSTYV
Sbjct: 310  GYYCQDELIRSTRSLVLYLARKYRGMGIALDDLLQAGYVGVLQGAERFDSTRGYKFSTYV 369

Query: 612  QYWIRKSMSAYVAQNSRGIQLPATLARAIYQIQKARKTLHSLYGRYPDDNEIATFTGLSL 791
            QYWIRKS+   VA+ +RGI +P +L RAI QIQKARK + S + + PDD EIA  TGLSL
Sbjct: 370  QYWIRKSILRVVARYARGIVIPWSLNRAINQIQKARKAMKSTHKKCPDDYEIAKMTGLSL 429

Query: 792  AKIRLASKCPRIVGSIDQKLGDDINIKFMEFTPDRSVEIPDEVVMKQHMQKDVYKLLEDL 971
             KI+ AS C RIV SIDQK+GD + +++ME  PD ++E P++ VMKQHM+KDV+ LL+ L
Sbjct: 430  DKIKSASNCLRIVASIDQKVGDYLGVEYMELLPDATIESPEDAVMKQHMRKDVHDLLKGL 489

Query: 972  DQREKQVLILRQGLWDGQCKSLEEIGKLFNVTKEWIRKIEKSAYNKVRKEENLSNLSHYL 1151
            + RE+++L LR GL D Q +SL++IG LF V+KE IRKIEK A  K++ E  +S L +YL
Sbjct: 490  NLRERKILTLRFGLNDNQPRSLQDIGTLFKVSKERIRKIEKKALTKLKNEATISKLHYYL 549

Query: 1152 DL 1157
            DL
Sbjct: 550  DL 551


>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297323785|gb|EFH54206.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 568

 Score =  376 bits (965), Expect = e-101
 Identities = 183/303 (60%), Positives = 245/303 (80%), Gaps = 1/303 (0%)
 Frame = +3

Query: 249  RSKRVIVAKNESEMSRGVKEVVNLERIRTMLEEETGRVASFKSWAEAARIDERLLKERLH 428
            R KR  ++KNE+EMS GVK V ++ERIRT LEEE+G+VAS   WAEAA ++E+LL   LH
Sbjct: 265  RKKRERISKNEAEMSTGVKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLH 324

Query: 429  FGWYCRDKLLKSTRSLVLFLARNYRGVGISLEDLLQAGYMGVLLGAERYDHTRGYRFSTY 608
            +GWYCRD+LLKSTRSLVLFLARNYRG+GI+ EDL+QAGY+GVL GAER+DHTRGY+FSTY
Sbjct: 325  YGWYCRDELLKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTY 384

Query: 609  VQYWIRKSMSAYVAQNSRGIQLPATLARAIYQIQKARKTLHSLYG-RYPDDNEIATFTGL 785
            VQYWIRKSMS  V++++RG+ +P+++ R I QIQKARKTL + +G +YP D +I+  T L
Sbjct: 385  VQYWIRKSMSMMVSRHARGVHIPSSIIRTINQIQKARKTLKTSHGIKYPADEDISKLTSL 444

Query: 786  SLAKIRLASKCPRIVGSIDQKLGDDINIKFMEFTPDRSVEIPDEVVMKQHMQKDVYKLLE 965
            S+ KIR A++C ++VGSI++K+GD  + KF+EFTPD ++E P+E VM+Q  ++D++ LLE
Sbjct: 445  SVKKIRAANQCLKVVGSIEKKVGDCFSTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLE 504

Query: 966  DLDQREKQVLILRQGLWDGQCKSLEEIGKLFNVTKEWIRKIEKSAYNKVRKEENLSNLSH 1145
             L+ REKQV++LR GL + + KSLEEIGKL  V+KEWIRKIE+ A  K+R + N  +L +
Sbjct: 505  GLEPREKQVMVLRYGLQNYRPKSLEEIGKLLRVSKEWIRKIERRAMAKLRDQPNAEDLRY 564

Query: 1146 YLD 1154
            YL+
Sbjct: 565  YLN 567


>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 571

 Score =  374 bits (960), Expect = e-101
 Identities = 183/303 (60%), Positives = 242/303 (79%), Gaps = 1/303 (0%)
 Frame = +3

Query: 249  RSKRVIVAKNESEMSRGVKEVVNLERIRTMLEEETGRVASFKSWAEAARIDERLLKERLH 428
            R KR  +++NE+EMS GVK V ++ERIRT LEEE+G+VAS   WA AA ++E+LL   LH
Sbjct: 268  RKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLH 327

Query: 429  FGWYCRDKLLKSTRSLVLFLARNYRGVGISLEDLLQAGYMGVLLGAERYDHTRGYRFSTY 608
            +GWYCRD+L+KSTRSLVLFLARNYRG+GI+ EDL+QAGY+GVL GAER+DHTRGY+FSTY
Sbjct: 328  YGWYCRDELVKSTRSLVLFLARNYRGMGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTY 387

Query: 609  VQYWIRKSMSAYVAQNSRGIQLPATLARAIYQIQKARKTLHSLYG-RYPDDNEIATFTGL 785
            VQYWIRKSMS  V++++RG+ +P+++ R I  IQKARKTL + +G +Y  D EIA  TG 
Sbjct: 388  VQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGH 447

Query: 786  SLAKIRLASKCPRIVGSIDQKLGDDINIKFMEFTPDRSVEIPDEVVMKQHMQKDVYKLLE 965
            S+ KIR A++C ++VGSID+K+GD    KF+EFTPD ++E P+E VM+Q  ++D++ LLE
Sbjct: 448  SVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLE 507

Query: 966  DLDQREKQVLILRQGLWDGQCKSLEEIGKLFNVTKEWIRKIEKSAYNKVRKEENLSNLSH 1145
             L+ REKQV++LR GL D + KSLEEIGKLF V+KEWIRKIE+ A  K+R + N  +L +
Sbjct: 508  GLEPREKQVMVLRYGLQDYRPKSLEEIGKLFKVSKEWIRKIERRAMAKLRDQPNAEDLRY 567

Query: 1146 YLD 1154
            YL+
Sbjct: 568  YLN 570


>ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Capsella rubella]
            gi|482559522|gb|EOA23713.1| hypothetical protein
            CARUB_v10016920mg [Capsella rubella]
          Length = 581

 Score =  372 bits (955), Expect = e-100
 Identities = 182/304 (59%), Positives = 242/304 (79%), Gaps = 1/304 (0%)
 Frame = +3

Query: 249  RSKRVIVAKNESEMSRGVKEVVNLERIRTMLEEETGRVASFKSWAEAARIDERLLKERLH 428
            R KR  +++NE+EMS GVK V ++ERIRT LEEE+G+VAS   WAEAA ++E+LL   LH
Sbjct: 278  RKKRERISRNEAEMSTGVKIVADMERIRTQLEEESGKVASLSCWAEAAGMNEKLLMRNLH 337

Query: 429  FGWYCRDKLLKSTRSLVLFLARNYRGVGISLEDLLQAGYMGVLLGAERYDHTRGYRFSTY 608
            +GWYCRD+LLKSTRSLVLFLARNYRG+GI+ EDL+QAG++GVL GAER+DH RGY+FSTY
Sbjct: 338  YGWYCRDELLKSTRSLVLFLARNYRGLGIAHEDLIQAGFVGVLQGAERFDHARGYKFSTY 397

Query: 609  VQYWIRKSMSAYVAQNSRGIQLPATLARAIYQIQKARKTLHSLYG-RYPDDNEIATFTGL 785
            VQYWIRKSMS  V++++RG+ +P+++ R I QIQKARKTL + +G +YP D EI+  T L
Sbjct: 398  VQYWIRKSMSMMVSRHARGVHIPSSIIRTINQIQKARKTLKTSHGIKYPADEEISKLTSL 457

Query: 786  SLAKIRLASKCPRIVGSIDQKLGDDINIKFMEFTPDRSVEIPDEVVMKQHMQKDVYKLLE 965
            S+ KIR A++C ++VGSI+ K+GD  + KF+EFTPD  +E P+E VM+Q  ++D++ LLE
Sbjct: 458  SVKKIRAANQCLKVVGSIENKVGDCFSTKFLEFTPDTMMESPEEAVMRQSARRDLHDLLE 517

Query: 966  DLDQREKQVLILRQGLWDGQCKSLEEIGKLFNVTKEWIRKIEKSAYNKVRKEENLSNLSH 1145
             L+ REKQV++LR GL D + KSLEEIGKL  V+KEWIR+IE+ A  K+R + N  +L +
Sbjct: 518  GLEPREKQVMVLRYGLQDYRPKSLEEIGKLLRVSKEWIRRIERRAMAKLRDQPNAEDLRY 577

Query: 1146 YLDL 1157
            YL L
Sbjct: 578  YLKL 581


>ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana]
            gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA
            polymerase sigma factor sigC; Short=Sigma factor C;
            Short=Sigma-C; AltName: Full=RNA polymerase sigma factor
            sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
            Precursor gi|2353175|gb|AAB69386.1| sigma factor 3
            [Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC
            [Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma
            factor SigC [Arabidopsis thaliana]
            gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis
            thaliana] gi|133778870|gb|ABO38775.1| At3g53920
            [Arabidopsis thaliana] gi|332645638|gb|AEE79159.1|
            RNApolymerase sigma-subunit C [Arabidopsis thaliana]
          Length = 571

 Score =  372 bits (954), Expect = e-100
 Identities = 182/303 (60%), Positives = 241/303 (79%), Gaps = 1/303 (0%)
 Frame = +3

Query: 249  RSKRVIVAKNESEMSRGVKEVVNLERIRTMLEEETGRVASFKSWAEAARIDERLLKERLH 428
            R KR  +++NE+EMS GVK V ++ERIRT LEEE+G+VAS   WA AA ++E+LL   LH
Sbjct: 268  RKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAAAAGMNEKLLMRNLH 327

Query: 429  FGWYCRDKLLKSTRSLVLFLARNYRGVGISLEDLLQAGYMGVLLGAERYDHTRGYRFSTY 608
            +GWYCRD+L+KSTRSLVLFLARNYRG+GI+ EDL+QAGY+GVL GAER+DHTRGY+FSTY
Sbjct: 328  YGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGAERFDHTRGYKFSTY 387

Query: 609  VQYWIRKSMSAYVAQNSRGIQLPATLARAIYQIQKARKTLHSLYG-RYPDDNEIATFTGL 785
            VQYWIRKSMS  V++++RG+ +P+++ R I  IQKARKTL + +G +Y  D EIA  TG 
Sbjct: 388  VQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHGIKYAADEEIAKLTGH 447

Query: 786  SLAKIRLASKCPRIVGSIDQKLGDDINIKFMEFTPDRSVEIPDEVVMKQHMQKDVYKLLE 965
            S+ KIR A++C ++VGSID+K+GD    KF+EFTPD ++E P+E VM+Q  ++D++ LLE
Sbjct: 448  SVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSARRDIHDLLE 507

Query: 966  DLDQREKQVLILRQGLWDGQCKSLEEIGKLFNVTKEWIRKIEKSAYNKVRKEENLSNLSH 1145
             L+ REKQV++LR GL D + KSLEEIGKL  V+KEWIRKIE+ A  K+R + N  +L +
Sbjct: 508  GLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRDQPNAEDLRY 567

Query: 1146 YLD 1154
            YL+
Sbjct: 568  YLN 570