BLASTX nr result
ID: Papaver27_contig00020451
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver27_contig00020451
(965 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AFV74904.1| RNA polymerase II second largest subunit, partial... 38 6e-07
gb|AAT12267.1| RNA polymerase II second largest subunit [Diapens... 37 2e-06
ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II su... 36 3e-06
gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis p... 36 3e-06
emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis... 36 3e-06
emb|CAD88602.1| RNA polymerase II second largest subunit [Alangi... 36 3e-06
gb|AAT69112.1| RNA polymerase II [Odonellia hirtiflora] 36 3e-06
ref|XP_006859038.1| hypothetical protein AMTR_s00068p00181410 [A... 35 3e-06
ref|XP_006413743.1| hypothetical protein EUTSA_v10024251mg [Eutr... 36 3e-06
ref|XP_006285577.1| hypothetical protein CARUB_v10007021mg [Caps... 36 3e-06
gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschsch... 35 3e-06
gb|AAY85235.1| RNA polymerase II second largest subunit [Tetrace... 35 3e-06
gb|AAY85202.1| RNA polymerase II second largest subunit [Dianthu... 36 4e-06
gb|AAS86824.1| RNA polymerase II second largest subunit, partial... 35 4e-06
gb|AAS86820.1| RNA polymerase II second largest subunit, partial... 35 4e-06
gb|AAW22927.1| RNA polymerase II second largest subunit [Dianthu... 36 4e-06
gb|AAW22922.1| RNA polymerase II second largest subunit [Amborel... 35 4e-06
gb|ACP41894.1| RNA polymerase II [Petrocoptis pyrenaica] 36 4e-06
gb|ACP41883.1| RNA polymerase II [Heliosperma oliverae] 36 4e-06
gb|ACP41876.1| RNA polymerase II [Heliosperma insulare] gi|22782... 36 4e-06
>gb|AFV74904.1| RNA polymerase II second largest subunit, partial [Viscum
alniformosanae]
Length = 569
Score = 38.1 bits (87), Expect(3) = 6e-07
Identities = 25/66 (37%), Positives = 36/66 (54%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRV+GEDVI+ + S SF Y + H S+RHS++ I + LL T +
Sbjct: 343 GTRVSGEDVIIGKTSPIAQDESQGQSFRYTKRDHSTSLRHSETGIVDQV---LLTTNADG 399
Query: 455 LGFIQV 438
L F++V
Sbjct: 400 LRFVKV 405
Score = 32.7 bits (73), Expect(3) = 6e-07
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 412 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 439
Score = 29.3 bits (64), Expect(3) = 6e-07
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 445 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 477
>gb|AAT12267.1| RNA polymerase II second largest subunit [Diapensia lapponica]
Length = 541
Score = 36.6 bits (83), Expect(3) = 2e-06
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRV+GEDVI+ T +T + Y + H S+RHS+S + + LL T +
Sbjct: 350 GTRVSGEDVIIGKTTPIAPDDATGQNSRYTRRDHSTSLRHSESGMVDQV---LLTTNADG 406
Query: 455 LGFIQV 438
L F++V
Sbjct: 407 LRFVKV 412
Score = 32.7 bits (73), Expect(3) = 2e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 419 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 446
Score = 29.3 bits (64), Expect(3) = 2e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 452 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 484
>ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
vinifera] gi|147841183|emb|CAN72948.1| hypothetical
protein VITISV_033708 [Vitis vinifera]
gi|302143287|emb|CBI21848.3| unnamed protein product
[Vitis vinifera]
Length = 1193
Score = 35.8 bits (81), Expect(3) = 3e-06
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRV+GEDVI+ T + S + Y + H S+RHS+S + + LL T +
Sbjct: 866 GTRVSGEDVIIGKTTPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQV---LLTTNADG 922
Query: 455 LGFIQV 438
L F++V
Sbjct: 923 LRFVKV 928
Score = 32.7 bits (73), Expect(3) = 3e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 935 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 962
Score = 29.3 bits (64), Expect(3) = 3e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 968 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 1000
>gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii]
Length = 951
Score = 35.8 bits (81), Expect(3) = 3e-06
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRV+GEDVI+ T + S + Y + H S+RHS+S + + LL T +
Sbjct: 760 GTRVSGEDVIIGKTTPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQV---LLTTNADG 816
Query: 455 LGFIQV 438
L F++V
Sbjct: 817 LRFVKV 822
Score = 32.7 bits (73), Expect(3) = 3e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 829 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 856
Score = 29.3 bits (64), Expect(3) = 3e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 862 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 894
>emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis piasezkii]
Length = 551
Score = 35.8 bits (81), Expect(3) = 3e-06
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRV+GEDVI+ T + S + Y + H S+RHS+S + + LL T +
Sbjct: 351 GTRVSGEDVIIGKTTPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQV---LLTTNADG 407
Query: 455 LGFIQV 438
L F++V
Sbjct: 408 LRFVKV 413
Score = 32.7 bits (73), Expect(3) = 3e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 420 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 447
Score = 29.3 bits (64), Expect(3) = 3e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 453 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 485
>emb|CAD88602.1| RNA polymerase II second largest subunit [Alangium platanifolium]
Length = 540
Score = 35.8 bits (81), Expect(3) = 3e-06
Identities = 24/66 (36%), Positives = 35/66 (53%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRV+GEDVI+ T S + Y + H S+RHS++ I + LL T +
Sbjct: 349 GTRVSGEDVIIGKTTPIAQDDSQGQASRYSRRDHSTSLRHSETGIVDQV---LLTTNADG 405
Query: 455 LGFIQV 438
L F++V
Sbjct: 406 LRFVKV 411
Score = 32.7 bits (73), Expect(3) = 3e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 418 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 445
Score = 29.3 bits (64), Expect(3) = 3e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 451 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 483
>gb|AAT69112.1| RNA polymerase II [Odonellia hirtiflora]
Length = 202
Score = 35.8 bits (81), Expect(3) = 3e-06
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRV+GEDVI+ T + + S Y + H S+RHS++ I + LL T +
Sbjct: 63 GTRVSGEDVIIGKTTPISQDDAQGQSARYTKRDHSTSLRHSETGIVDQV---LLTTNADG 119
Query: 455 LGFIQV 438
L F++V
Sbjct: 120 LRFVKV 125
Score = 32.7 bits (73), Expect(3) = 3e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 132 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 159
Score = 29.3 bits (64), Expect(3) = 3e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 165 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 197
>ref|XP_006859038.1| hypothetical protein AMTR_s00068p00181410 [Amborella trichopoda]
gi|548863150|gb|ERN20505.1| hypothetical protein
AMTR_s00068p00181410 [Amborella trichopoda]
Length = 1190
Score = 35.4 bits (80), Expect(3) = 3e-06
Identities = 24/66 (36%), Positives = 35/66 (53%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRV+GEDVI+ T T + Y + H S+RHS+S + + LL T +
Sbjct: 859 GTRVSGEDVIIGKTTPITQEEMQGQASRYTRRDHSTSLRHSESGMVDQV---LLTTNADG 915
Query: 455 LGFIQV 438
L F++V
Sbjct: 916 LRFVKV 921
Score = 32.7 bits (73), Expect(3) = 3e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 928 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 955
Score = 29.3 bits (64), Expect(3) = 3e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 961 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 993
>ref|XP_006413743.1| hypothetical protein EUTSA_v10024251mg [Eutrema salsugineum]
gi|557114913|gb|ESQ55196.1| hypothetical protein
EUTSA_v10024251mg [Eutrema salsugineum]
Length = 1188
Score = 35.8 bits (81), Expect(3) = 3e-06
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRVTGEDVI+ T + + S Y + H S+RHS++ + + LL T +
Sbjct: 865 GTRVTGEDVIIGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQV---LLTTNADG 921
Query: 455 LGFIQV 438
L F++V
Sbjct: 922 LRFVKV 927
Score = 32.7 bits (73), Expect(3) = 3e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 934 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 961
Score = 28.9 bits (63), Expect(3) = 3e-06
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
+T DIIVNPH + GQLI+ M KV H+
Sbjct: 967 VTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 999
>ref|XP_006285577.1| hypothetical protein CARUB_v10007021mg [Capsella rubella]
gi|482554282|gb|EOA18475.1| hypothetical protein
CARUB_v10007021mg [Capsella rubella]
Length = 1188
Score = 35.8 bits (81), Expect(3) = 3e-06
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRVTGEDVI+ T + + S Y + H S+RHS++ + + LL T +
Sbjct: 865 GTRVTGEDVIIGKTTPISQDEAEGQSSRYTRRDHSISLRHSETGMVDQV---LLTTNADG 921
Query: 455 LGFIQV 438
L F++V
Sbjct: 922 LRFVKV 927
Score = 32.7 bits (73), Expect(3) = 3e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 934 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 961
Score = 28.9 bits (63), Expect(3) = 3e-06
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
+T DIIVNPH + GQLI+ M KV H+
Sbjct: 967 VTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 999
>gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschscholzia californica]
Length = 951
Score = 35.4 bits (80), Expect(3) = 3e-06
Identities = 24/66 (36%), Positives = 35/66 (53%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRV+GEDVI+ T S + Y + H S+RHS+S + + LL T +
Sbjct: 760 GTRVSGEDVIIGKTTPIAQDDSQGQASRYTRRDHSTSLRHSESGMVDQV---LLTTNADG 816
Query: 455 LGFIQV 438
L F++V
Sbjct: 817 LRFVKV 822
Score = 32.7 bits (73), Expect(3) = 3e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 829 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 856
Score = 29.3 bits (64), Expect(3) = 3e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 862 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 894
>gb|AAY85235.1| RNA polymerase II second largest subunit [Tetracentron sinense]
Length = 951
Score = 35.4 bits (80), Expect(3) = 3e-06
Identities = 24/66 (36%), Positives = 35/66 (53%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRV+GEDVI+ T S + Y + H S+RHS+S + + LL T +
Sbjct: 760 GTRVSGEDVIIGKTTPIAQDESQGQASRYTRRDHSTSLRHSESGMVDQV---LLTTNADG 816
Query: 455 LGFIQV 438
L F++V
Sbjct: 817 LRFVKV 822
Score = 32.7 bits (73), Expect(3) = 3e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 829 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 856
Score = 29.3 bits (64), Expect(3) = 3e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 862 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 894
>gb|AAY85202.1| RNA polymerase II second largest subunit [Dianthus caryophyllus]
Length = 674
Score = 35.8 bits (81), Expect(3) = 4e-06
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRV+GEDVI+ T + + + Y + H S+RHS+S I + LL T +
Sbjct: 483 GTRVSGEDVIIGKTTPLSPEEAQGPAARYSRKDHSISLRHSESGIVDQV---LLTTNADG 539
Query: 455 LGFIQV 438
L F++V
Sbjct: 540 LRFVKV 545
Score = 32.7 bits (73), Expect(3) = 4e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 552 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 579
Score = 28.9 bits (63), Expect(3) = 4e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 585 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHV 617
>gb|AAS86824.1| RNA polymerase II second largest subunit, partial [Eschscholzia
californica]
Length = 559
Score = 35.4 bits (80), Expect(3) = 4e-06
Identities = 24/66 (36%), Positives = 35/66 (53%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRV+GEDVI+ T S + Y + H S+RHS+S + + LL T +
Sbjct: 368 GTRVSGEDVIIGKTTPIAQDDSQGQASRYTRRDHSTSLRHSESGMVDQV---LLTTNADG 424
Query: 455 LGFIQV 438
L F++V
Sbjct: 425 LRFVKV 430
Score = 32.7 bits (73), Expect(3) = 4e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 437 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 464
Score = 29.3 bits (64), Expect(3) = 4e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 470 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 502
>gb|AAS86820.1| RNA polymerase II second largest subunit, partial [Trochodendron
aralioides]
Length = 547
Score = 35.4 bits (80), Expect(3) = 4e-06
Identities = 24/66 (36%), Positives = 35/66 (53%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRV+GEDVI+ T S + Y + H S+RHS+S + + LL T +
Sbjct: 347 GTRVSGEDVIIGKTTPIAQDESQGQASRYTRRDHSTSLRHSESGMVDQV---LLTTNADG 403
Query: 455 LGFIQV 438
L F++V
Sbjct: 404 LRFVKV 409
Score = 32.7 bits (73), Expect(3) = 4e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 416 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 443
Score = 29.3 bits (64), Expect(3) = 4e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 449 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 481
>gb|AAW22927.1| RNA polymerase II second largest subunit [Dianthus sp. UWG]
Length = 540
Score = 35.8 bits (81), Expect(3) = 4e-06
Identities = 24/66 (36%), Positives = 36/66 (54%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRV+GEDVI+ T + + + Y + H S+RHS+S I + LL T +
Sbjct: 349 GTRVSGEDVIIGKTTPLSPEEAQGPAARYSRKDHSISLRHSESGIVDQV---LLTTNADG 405
Query: 455 LGFIQV 438
L F++V
Sbjct: 406 LRFVKV 411
Score = 32.7 bits (73), Expect(3) = 4e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 418 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 445
Score = 28.9 bits (63), Expect(3) = 4e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 451 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHV 483
>gb|AAW22922.1| RNA polymerase II second largest subunit [Amborella trichopoda]
Length = 516
Score = 35.4 bits (80), Expect(3) = 4e-06
Identities = 24/66 (36%), Positives = 35/66 (53%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRV+GEDVI+ T T + Y + H S+RHS+S + + LL T +
Sbjct: 322 GTRVSGEDVIIGKTTPITQEEMQGQASRYTRRDHSTSLRHSESGMVDQV---LLTTNADG 378
Query: 455 LGFIQV 438
L F++V
Sbjct: 379 LRFVKV 384
Score = 32.7 bits (73), Expect(3) = 4e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 391 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 418
Score = 29.3 bits (64), Expect(3) = 4e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 424 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHM 456
>gb|ACP41894.1| RNA polymerase II [Petrocoptis pyrenaica]
Length = 249
Score = 35.8 bits (81), Expect(3) = 4e-06
Identities = 24/66 (36%), Positives = 35/66 (53%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRV+GEDVI+ T + + + Y + H S+RHS+S I LL T +
Sbjct: 81 GTRVSGEDVIIGKTTPLSPEEAQGPAARYSRKDHSISLRHSESGIV------LLTTNADG 134
Query: 455 LGFIQV 438
L F++V
Sbjct: 135 LRFVKV 140
Score = 32.7 bits (73), Expect(3) = 4e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 147 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 174
Score = 28.9 bits (63), Expect(3) = 4e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 180 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHV 212
>gb|ACP41883.1| RNA polymerase II [Heliosperma oliverae]
Length = 248
Score = 35.8 bits (81), Expect(3) = 4e-06
Identities = 24/66 (36%), Positives = 35/66 (53%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRV+GEDVI+ T + + + Y + H S+RHS+S I LL T +
Sbjct: 81 GTRVSGEDVIIGKTTPLSPEEAQGPAARYSRKDHSISLRHSESGIV------LLTTNADG 134
Query: 455 LGFIQV 438
L F++V
Sbjct: 135 LRFVKV 140
Score = 32.7 bits (73), Expect(3) = 4e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 147 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 174
Score = 28.9 bits (63), Expect(3) = 4e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 180 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHV 212
>gb|ACP41876.1| RNA polymerase II [Heliosperma insulare]
gi|227826318|gb|ACP41886.1| RNA polymerase II
[Heliosperma pusillum] gi|227826326|gb|ACP41890.1| RNA
polymerase II [Heliosperma tommasinii]
gi|227826328|gb|ACP41891.1| RNA polymerase II
[Heliosperma veselskyi subsp. veselskyi]
gi|227826338|gb|ACP41896.1| RNA polymerase II [Silene
conica]
Length = 243
Score = 35.8 bits (81), Expect(3) = 4e-06
Identities = 24/66 (36%), Positives = 35/66 (53%)
Frame = -1
Query: 635 GTRVTGEDVIMRDRTHCTG*SSTRASFHYKQCVHGASIRHSQSEIAVRYYSSLLNTCWNT 456
GTRV+GEDVI+ T + + + Y + H S+RHS+S I LL T +
Sbjct: 81 GTRVSGEDVIIGKTTPLSPEEAQGPAARYSRKDHSISLRHSESGIV------LLTTNADG 134
Query: 455 LGFIQV 438
L F++V
Sbjct: 135 LRFVKV 140
Score = 32.7 bits (73), Expect(3) = 4e-06
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Frame = -2
Query: 460 IP*VLFKFISRHG---TVGMTCTQEDIP 386
IP + KF SRHG TVGMT TQED+P
Sbjct: 147 IPQIGDKFSSRHGQKGTVGMTYTQEDMP 174
Score = 28.9 bits (63), Expect(3) = 4e-06
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 369 ITSDIIVNPHLLLMNDN-GQLID*TMRKVEDHL 274
IT DIIVNPH + GQLI+ M KV H+
Sbjct: 180 ITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHV 212