BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00020240
         (768 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   149   8e-34
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              149   8e-34
ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citr...   149   1e-33
ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citr...   149   1e-33
ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citr...   149   1e-33
ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF,...   148   2e-33
ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF,...   148   2e-33
ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF,...   148   2e-33
ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [...   148   2e-33
ref|XP_006827418.1| hypothetical protein AMTR_s00009p00072720 [A...   144   4e-32
ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prun...   132   1e-28
ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF,...   130   7e-28
ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF,...   126   7e-27
gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]     123   8e-26
ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protei...   123   8e-26
ref|NP_565856.1| RNA polymerase sigma factor sigF [Arabidopsis t...   123   8e-26
ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis ...   120   7e-25
ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF,...   119   9e-25
gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus...   118   2e-24
ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF,...   118   2e-24

>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  149 bits (377), Expect = 8e-34
 Identities = 104/228 (45%), Positives = 140/228 (61%), Gaps = 8/228 (3%)
 Frame = -3

Query: 661 RHFPASVL-QEQRDQFRSLLH-LREEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 488
           R FP SVL QEQRD++R     L++E+ +QA L++ Q++   S ++E  +   ++Y+ +F
Sbjct: 58  RKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDD-HNQYMVNF 116

Query: 487 ERQLLYSPGLWYLSPPSQ--RENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSK 314
           ERQLL  PGLWY  P SQ   ++  SS  M+S+ +D +  + VK  D+LALAK+A+  SK
Sbjct: 117 ERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASK 176

Query: 313 QAASLIVDSNSNLHNAN-ELIPSFGMNDISPPE---KENIVRSTRLLERQSKKRRAPKSA 146
           QA SL    N+ L  A+ E  PS  +  IS P    +E  VRSTRLLER+SKKRR PK A
Sbjct: 177 QAVSLY--ENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVA 234

Query: 145 PLGDEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKEL 2
            + +   S R   +       D  DPLRLFL G E R+LLTAKEE EL
Sbjct: 235 -VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESEL 281


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  149 bits (377), Expect = 8e-34
 Identities = 104/228 (45%), Positives = 140/228 (61%), Gaps = 8/228 (3%)
 Frame = -3

Query: 661 RHFPASVL-QEQRDQFRSLLH-LREEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 488
           R FP SVL QEQRD++R     L++E+ +QA L++ Q++   S ++E  +   ++Y+ +F
Sbjct: 47  RKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVSADEENSDD-HNQYMVNF 105

Query: 487 ERQLLYSPGLWYLSPPSQ--RENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSK 314
           ERQLL  PGLWY  P SQ   ++  SS  M+S+ +D +  + VK  D+LALAK+A+  SK
Sbjct: 106 ERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASK 165

Query: 313 QAASLIVDSNSNLHNAN-ELIPSFGMNDISPPE---KENIVRSTRLLERQSKKRRAPKSA 146
           QA SL    N+ L  A+ E  PS  +  IS P    +E  VRSTRLLER+SKKRR PK A
Sbjct: 166 QAVSLY--ENAKLLGADLEDSPSPSLGAISSPNLPLEEKTVRSTRLLERRSKKRRNPKVA 223

Query: 145 PLGDEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKEL 2
            + +   S R   +       D  DPLRLFL G E R+LLTAKEE EL
Sbjct: 224 -VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESEL 270


>ref|XP_006428732.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
           gi|557530789|gb|ESR41972.1| hypothetical protein
           CICLE_v10011376mg [Citrus clementina]
          Length = 561

 Score =  149 bits (376), Expect = 1e-33
 Identities = 98/224 (43%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
 Frame = -3

Query: 661 RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 488
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   ++ +    +EK     D+ ++D 
Sbjct: 49  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDL 108

Query: 487 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 311
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 109 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 168

Query: 310 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 131
           AASL    N  L+ A     S   +   P E+   VRSTR LER+SKKR+  K      E
Sbjct: 169 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHE 226

Query: 130 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 2
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 227 TYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFEL 270


>ref|XP_006428731.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
           gi|557530788|gb|ESR41971.1| hypothetical protein
           CICLE_v10011376mg [Citrus clementina]
          Length = 569

 Score =  149 bits (376), Expect = 1e-33
 Identities = 98/224 (43%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
 Frame = -3

Query: 661 RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 488
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   ++ +    +EK     D+ ++D 
Sbjct: 57  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDL 116

Query: 487 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 311
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 117 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 176

Query: 310 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 131
           AASL    N  L+ A     S   +   P E+   VRSTR LER+SKKR+  K      E
Sbjct: 177 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHE 234

Query: 130 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 2
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 235 TYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFEL 278


>ref|XP_006428730.1| hypothetical protein CICLE_v10011376mg [Citrus clementina]
           gi|557530787|gb|ESR41970.1| hypothetical protein
           CICLE_v10011376mg [Citrus clementina]
          Length = 558

 Score =  149 bits (376), Expect = 1e-33
 Identities = 98/224 (43%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
 Frame = -3

Query: 661 RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 488
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   ++ +    +EK     D+ ++D 
Sbjct: 46  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDL 105

Query: 487 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 311
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 106 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 165

Query: 310 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 131
           AASL    N  L+ A     S   +   P E+   VRSTR LER+SKKR+  K      E
Sbjct: 166 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTRFLERRSKKRKVSKPKVTNHE 223

Query: 130 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 2
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 224 TYNSRKASVKKKLSEGFDPNDPLRLFLWGPETRKLLTADEEFEL 267


>ref|XP_006493036.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X3 [Citrus sinensis]
          Length = 561

 Score =  148 bits (373), Expect = 2e-33
 Identities = 97/224 (43%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
 Frame = -3

Query: 661 RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 488
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   ++ +    +EK     D+ ++D 
Sbjct: 49  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDL 108

Query: 487 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 311
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 109 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 168

Query: 310 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 131
           AASL    N  L+ A     S   +   P E+   VRST+ LER+SKKR+  K      E
Sbjct: 169 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHE 226

Query: 130 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 2
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 227 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFEL 270


>ref|XP_006493035.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X2 [Citrus sinensis]
          Length = 569

 Score =  148 bits (373), Expect = 2e-33
 Identities = 97/224 (43%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
 Frame = -3

Query: 661 RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 488
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   ++ +    +EK     D+ ++D 
Sbjct: 57  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDL 116

Query: 487 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 311
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 117 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 176

Query: 310 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 131
           AASL    N  L+ A     S   +   P E+   VRST+ LER+SKKR+  K      E
Sbjct: 177 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHE 234

Query: 130 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 2
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 235 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFEL 278


>ref|XP_006493034.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           isoform X1 [Citrus sinensis]
          Length = 570

 Score =  148 bits (373), Expect = 2e-33
 Identities = 97/224 (43%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
 Frame = -3

Query: 661 RHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 488
           RHFP SVL QEQRD++R LLH+ +E+K  QA  D   ++ +    +EK     D+ ++D 
Sbjct: 58  RHFPTSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNMETEAFFVEEKNSGDLDQLVQDL 117

Query: 487 ERQLLYSPGLWYLSPPSQR-ENRVSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQ 311
           E Q L+ P LW LSPP +R E+   SL MQS+ +DT+E +  + +D +ALA++A+  SK+
Sbjct: 118 EHQFLHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKE 177

Query: 310 AASLIVDSNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE 131
           AASL    N  L+ A     S   +   P E+   VRST+ LER+SKKR+  K      E
Sbjct: 178 AASLA--ENPKLNGAEFTDISLTSSLGYPLEEVKTVRSTQFLERRSKKRKVSKPKVTNHE 235

Query: 130 ISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQLLTAKEEKEL 2
             + R      K S   D +DPLRLFL G E R+LLTA EE EL
Sbjct: 236 TYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFEL 279


>ref|XP_007027376.1| RNA polymerase sigma factor rpoD, putative [Theobroma cacao]
           gi|508715981|gb|EOY07878.1| RNA polymerase sigma factor
           rpoD, putative [Theobroma cacao]
          Length = 568

 Score =  148 bits (373), Expect = 2e-33
 Identities = 106/249 (42%), Positives = 139/249 (55%), Gaps = 7/249 (2%)
 Frame = -3

Query: 727 SVAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQRDQFRSL--LHL-REEKPYQAALDRT 560
           SV + HE               RHFP SVL QEQRD +R L  LH  +E+K Y  A D+ 
Sbjct: 31  SVLMFHEQAAPAATSIPITSVARHFPTSVLLQEQRDDYRPLPVLHFFKEDKAYPGATDKQ 90

Query: 559 QIDNDTSLNQEKKEHGSDKYLKDFERQLLYSPGLWYL-SPPSQRENRVSSLDMQSMPSDT 383
           QI+N  SLN+E   +   +    FE++LL  P L  L S     EN  S+ +MQS+ +DT
Sbjct: 91  QIENGASLNEENASNNFGQL--GFEKKLLQWPDLTQLLSLLESEENPSSTSNMQSVAADT 148

Query: 382 DEELHVKAYDLLALAKQAVLVSKQAASLIVDSNSNLHNANELIPSFGMNDISPPEKENIV 203
            E + V+  +++ALAK+A+  SKQAASL  D   +L ++         +   P EKE +V
Sbjct: 149 KEIVDVEPSNIVALAKKALSASKQAASLSEDLKLDLDDSLSNSLGSANSCTLPVEKEEVV 208

Query: 202 --RSTRLLERQSKKRRAPKSAPLGDEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQL 29
             RSTR LERQSK+RR      + +  SS RT  R   +   D +DPLRLFL G E +QL
Sbjct: 209 TVRSTRRLERQSKRRRVQPKVTIRETYSSRRTDVRRKLSEGFDPNDPLRLFLWGPETKQL 268

Query: 28  LTAKEEKEL 2
           LTAKEE EL
Sbjct: 269 LTAKEESEL 277


>ref|XP_006827418.1| hypothetical protein AMTR_s00009p00072720 [Amborella trichopoda]
           gi|548832038|gb|ERM94834.1| hypothetical protein
           AMTR_s00009p00072720 [Amborella trichopoda]
          Length = 573

 Score =  144 bits (362), Expect = 4e-32
 Identities = 98/240 (40%), Positives = 128/240 (53%), Gaps = 20/240 (8%)
 Frame = -3

Query: 661 RHFPASV-LQEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDF 488
           RHFPASV L EQRD  RS     +E+K YQ  +DR + +   S+  E K    D+YLKDF
Sbjct: 44  RHFPASVVLHEQRDDLRSPTSSPKEDKAYQEVMDRARTEVYASIGAETKNFEIDQYLKDF 103

Query: 487 ERQLLYSPGLWYLSPPSQRENRVSSLDMQSMPSDTDEELHVK-------------AYDLL 347
           ERQLLY P LWYLSP       + SL  Q  P +TD E  +K               D+L
Sbjct: 104 ERQLLYWPALWYLSPSRILPKSLLSLPFQCKPLETDIESEIKESRKKQTNCSSLNPMDVL 163

Query: 346 ALAKQAVLVSKQAASLIVDSNSNLHNAN-ELIPSFGMND--ISPPEKE--NIVRSTRLLE 182
            LAK+AV+ SK AA+L+  S+  + N + ++ P  G+ +  I  P+++    +RS R LE
Sbjct: 164 VLAKRAVMASKAAAALVEHSDLTVGNPDGDISPCSGLKEICIQVPDEDMRTTIRSKRHLE 223

Query: 181 RQSKKRRAPKSAPLGDEISSLRTTDRHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKEL 2
           RQ K+RR PK          +       K    D +DPLR FL G   +QLLT KEE EL
Sbjct: 224 RQIKRRRVPKKLKDFSANFEIGKKPEKVKNKSFDPNDPLRFFLWGPITKQLLTEKEESEL 283


>ref|XP_007204994.1| hypothetical protein PRUPE_ppa003513mg [Prunus persica]
           gi|462400636|gb|EMJ06193.1| hypothetical protein
           PRUPE_ppa003513mg [Prunus persica]
          Length = 568

 Score =  132 bits (333), Expect = 1e-28
 Identities = 100/259 (38%), Positives = 147/259 (56%), Gaps = 7/259 (2%)
 Frame = -3

Query: 757 KHQLRNAHP-LSVAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQRDQFRSLLH-LREEK 587
           +H L ++ P  SV +LHE               RHFP SVL QEQRD+F+ LLH L+E+K
Sbjct: 21  RHPLPSSSPSTSVLMLHEQAVPAVTSVPITSVARHFPTSVLLQEQRDEFKPLLHVLKEDK 80

Query: 586 PYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDFERQLLYSPGLWYLSPPSQRENRVSSLD 407
             +AALDR QI+   S++++         +   + QLL    L   S         + L 
Sbjct: 81  TSEAALDRMQIETGASVHEDLDIDDFYPLVNSSKPQLLNHDILDVFSSLQTGAKPSTPLT 140

Query: 406 MQSMPSDTDEELHVKAYDLLALAKQAVLVSKQAASLIVDSNSNLHNANELIPSFGMNDIS 227
           ++S+ + +++ + V+  +++ALAK+A+  S++AASL  DS S   + ++L  +   N I 
Sbjct: 141 LESLTTASNKHMDVEPCNVVALAKKALSASREAASLAEDSQSMGADFDDLGYTSLANWIV 200

Query: 226 PPEKENIVRSTRLLERQSKK---RRAPKSAPLGDEISSLRTTDRHHKTSL-IDLSDPLRL 59
             E+E  VRSTR+LER+ K+   R+ PKS  +G E +S   +D   K S   + +DPLRL
Sbjct: 201 --EEEKTVRSTRILERRRKRIKTRKVPKSKVIGHESNSFTGSDVRKKISEGFNPNDPLRL 258

Query: 58  FLSGAEARQLLTAKEEKEL 2
           FL G E RQLLTAKEE EL
Sbjct: 259 FLWGPETRQLLTAKEEAEL 277


>ref|XP_003542550.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic [Glycine
           max]
          Length = 574

 Score =  130 bits (326), Expect = 7e-28
 Identities = 93/269 (34%), Positives = 138/269 (51%), Gaps = 15/269 (5%)
 Frame = -3

Query: 763 PSKHQLRNAHPLS----VAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQRDQFRSLLHL 599
           P  H   N  PLS    V +L E               ++FPASVL QEQRD++R LLH+
Sbjct: 16  PRTHHPWNTLPLSSSTSVLMLREQASPTVASWSSNFSAQNFPASVLLQEQRDEYRPLLHM 75

Query: 598 -REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDFERQLLYSPGLWYLSPPSQRENR 422
            +E+K  QA L   Q+D    +++E     +D+ + DF + L Y P L  L   SQ    
Sbjct: 76  SKEDKTSQAMLSTRQMDT-VMVHEENNTENADQVVLDFRKHLHYWPHLQNLLASSQTGEI 134

Query: 421 VSSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQAASLIVDSNSNLHNANELIPSFG 242
            +S  +Q + SD D   +    + ++LAK+A+  SKQ +S++ D  S   + + +     
Sbjct: 135 SASSTLQQVSSDLDRHTNGVQCNRVSLAKKALSTSKQGSSVVEDLKSIKADDDSIPFGLA 194

Query: 241 MNDISPPE--KENIVRSTRLLERQSKKRRAPKSAPLGDEISSLRTTDRHHKTSL------ 86
              ++ P   +   VRSTRLLER+SK+R+ PKS  + DE    R  D H K  +      
Sbjct: 195 STGLADPSIGRNKTVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAHEKLRVEKKKNE 254

Query: 85  -IDLSDPLRLFLSGAEARQLLTAKEEKEL 2
            +D +DPL  FL G E +QLLT ++E +L
Sbjct: 255 ELDQNDPLCFFLRGPETKQLLTLEQESQL 283


>ref|XP_006588793.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           [Glycine max]
          Length = 575

 Score =  126 bits (317), Expect = 7e-27
 Identities = 91/255 (35%), Positives = 138/255 (54%), Gaps = 13/255 (5%)
 Frame = -3

Query: 727 SVAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQRDQFRSLLHL-REEKPYQAALDRTQI 554
           SV +LHE               ++FPASVL  EQRD++R LLH+ +E+K  QA L   Q+
Sbjct: 33  SVLMLHEQASPTVASWSSNFSAQNFPASVLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQM 92

Query: 553 DNDTSLNQEKKEHGSDKYLKDFERQLLYSPGLWYLSPPSQRENRVSSLDMQSMPSDTDEE 374
           D  T +++E     +D+ + DF + L + P L YL   SQ     +S  ++ +  D +  
Sbjct: 93  DTVT-VHEENNTENADQVVLDFRKHLHHWPNLQYLLTSSQIGEVAASSTLEHVSVDLERR 151

Query: 373 LHVKAYDLLALAKQAVLVSKQAASLIVDSNSNLHNANELIPSFGMNDISPPE----KENI 206
            +   ++ ++LAK+A+  SKQ +S++ D  S +   ++ IP FG+   S  +    +   
Sbjct: 152 PNGVQFNGVSLAKKALSTSKQESSVVEDLKS-IKADDDSIP-FGLASTSLADPSIGRNKT 209

Query: 205 VRSTRLLERQSKKRRAPKSAPLGDEISSLRTTDRHH-------KTSLIDLSDPLRLFLSG 47
           VRSTRLLER+SK+R+ PKS  + DE    R  D          K   +D  DPLRLFL G
Sbjct: 210 VRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWG 269

Query: 46  AEARQLLTAKEEKEL 2
            E +QLLT ++E +L
Sbjct: 270 PETKQLLTLEQESQL 284


>gb|EXC16188.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 543

 Score =  123 bits (308), Expect = 8e-26
 Identities = 79/217 (36%), Positives = 135/217 (62%), Gaps = 3/217 (1%)
 Frame = -3

Query: 643 VLQEQRDQFRSLLHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDFERQLLYS 467
           +LQEQRD+F+ LL + +E+K  Q  L+R Q D+   ++++  E   ++++ +FER  ++ 
Sbjct: 57  LLQEQRDEFKPLLRVNKEDKTSQGVLNRRQNDSGALVHEDTLE-DYNQFVWEFERPSVHW 115

Query: 466 PGLWYLSPPSQRENRV-SSLDMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQAASLIVD 290
           PG W++ P  + + ++ SSL M++      +++ V+  D +ALAK+A++ SK+AASL  +
Sbjct: 116 PGFWHVLPSLKTKVKLSSSLTMETTMGSCTKDVDVEVSDAIALAKKALMASKEAASLAEE 175

Query: 289 SNSNLHNANELIPSFGMNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDEISSLRTT 110
           S     ++++++    +      + +  VRSTRLLER+SK+R+ P+S+ L  E    R  
Sbjct: 176 SKLVGTDSDDMLSVSFLG-----KGDKTVRSTRLLERRSKRRKVPESSVLFYENPRNRAA 230

Query: 109 D-RHHKTSLIDLSDPLRLFLSGAEARQLLTAKEEKEL 2
           D R   +  ++  DPLRLFL+G E RQLLT +EE EL
Sbjct: 231 DIRKRLSEGLNSDDPLRLFLAGPETRQLLTFEEESEL 267


>ref|XP_006381426.1| RNA POLYMERASE SIGMA-70 FACTOR family protein [Populus trichocarpa]
           gi|550336129|gb|ERP59223.1| RNA POLYMERASE SIGMA-70
           FACTOR family protein [Populus trichocarpa]
          Length = 535

 Score =  123 bits (308), Expect = 8e-26
 Identities = 95/258 (36%), Positives = 137/258 (53%), Gaps = 4/258 (1%)
 Frame = -3

Query: 763 PSKHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQRDQFRSLLHL-REE 590
           P++  L+N+   SV +L E               +HFP SVL QEQRD+FR L ++ +E+
Sbjct: 15  PTRTHLKNSLTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQEQRDEFRPLQNIFKED 74

Query: 589 KPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDFERQLLYSPGLWYLSPPSQRENRVSSL 410
           +  QA LDR + +  TS ++ K     D+ +++FE QL + P  W L             
Sbjct: 75  RASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPAYWNL------------- 121

Query: 409 DMQSMPSDTDEELHVKAYDLLALAKQAVLVSKQAASLIVDSNSNLHN-ANELIPSFGMND 233
                   TD+ + V+  +++ LAK+A+  SK AA L  D+N++L N A+    SF + +
Sbjct: 122 --------TDKLIDVEPTNVINLAKRALSASKHAAFL-ADNNTDLDNLASTSSSSFSLEE 172

Query: 232 ISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDEISSLRTTDRHHKTSL-IDLSDPLRLF 56
           +       IVRS R L RQS  RRAPK+  L  E    ++ D   + S   D +DPLRLF
Sbjct: 173 VK------IVRSRRHLARQSLNRRAPKTKDLIFETYDSKSADVQKRLSQGFDPNDPLRLF 226

Query: 55  LSGAEARQLLTAKEEKEL 2
           L G E +QLLTAKEE EL
Sbjct: 227 LWGPETKQLLTAKEEFEL 244


>ref|NP_565856.1| RNA polymerase sigma factor sigF [Arabidopsis thaliana]
           gi|75173811|sp|Q9LD95.1|SIGF_ARATH RecName: Full=RNA
           polymerase sigma factor sigF, chloroplastic; Short=Sigma
           factor F; Short=Sigma-F; AltName: Full=Protein SINGLET
           OXYGEN-LINKED DEATH ACTIVATOR 8; AltName: Full=RNA
           polymerase sigma factor sig6; Short=Atsig6; Short=Sigma
           factor 6; Flags: Precursor gi|7209640|dbj|BAA92288.1|
           SigF [Arabidopsis thaliana] gi|7688083|emb|CAB89775.1|
           sigma factor-like protein [Arabidopsis thaliana]
           gi|16604647|gb|AAL24116.1| putative RNA polymerase
           sigma-70 factor [Arabidopsis thaliana]
           gi|20197948|gb|AAD31584.2| putative RNA polymerase
           sigma-70 factor [Arabidopsis thaliana]
           gi|20259557|gb|AAM14121.1| putative RNA polymerase
           sigma-70 factor protein [Arabidopsis thaliana]
           gi|330254238|gb|AEC09332.1| RNA polymerase sigma factor
           sigF [Arabidopsis thaliana]
          Length = 547

 Score =  123 bits (308), Expect = 8e-26
 Identities = 98/261 (37%), Positives = 143/261 (54%), Gaps = 8/261 (3%)
 Frame = -3

Query: 760 SKHQLRNAH--PLSVAVLHEXXXXXXXXXXXXXXT-RHFPASVL-QEQRDQFRSLLH-LR 596
           +K  L++++  P SV +LH+                RHFPASVL QE R++ R L H LR
Sbjct: 16  TKTHLKSSYSSPSSVVMLHDQTTTPVVNSRHLNSLSRHFPASVLSQEPREESRPLSHALR 75

Query: 595 EEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDFERQLLYSPGLWYLSPPSQRENRVS 416
           +++  Q  L+R Q D   S  +++K          FE+QLL+S GLW L         +S
Sbjct: 76  DDRTSQLTLERRQFDELVSSREDEK----------FEQQLLHSTGLWNLL--------IS 117

Query: 415 SLDMQS-MPSDTDEELHVKAYDLLALAKQAVLVSKQAASLIVDSNSN-LHNANELIPSFG 242
            L  ++ +P+        +  D++ALA++A+  SKQAA L+ D+ +N   N  + + +  
Sbjct: 118 PLTSETKLPAVVSPLADAELCDVVALAQKALSASKQAALLVDDTEANPSDNIKDSLST-- 175

Query: 241 MNDISPPEKENIVRSTRLLERQSKKRRAPKSAPLGDE-ISSLRTTDRHHKTSLIDLSDPL 65
            + +S PEK NIVRS R LER++K RRAPKS  + DE     +T+ +       D  D L
Sbjct: 176 SSSMSLPEKGNIVRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDAL 235

Query: 64  RLFLSGAEARQLLTAKEEKEL 2
           +LFL G E +QLLTAKEE EL
Sbjct: 236 QLFLWGPETKQLLTAKEEAEL 256


>ref|XP_002881484.1| RNA polymerase sigma-70 factor [Arabidopsis lyrata subsp. lyrata]
           gi|297327323|gb|EFH57743.1| RNA polymerase sigma-70
           factor [Arabidopsis lyrata subsp. lyrata]
          Length = 546

 Score =  120 bits (300), Expect = 7e-25
 Identities = 100/257 (38%), Positives = 135/257 (52%), Gaps = 6/257 (2%)
 Frame = -3

Query: 754 HQLRNAHPLSVAVLHEXXXXXXXXXXXXXXT-RHFPASVL-QEQRDQFRSLLH-LREEKP 584
           H    + P SV +LHE                RHFPASVL QE R++ R L H LRE++ 
Sbjct: 19  HLKSYSSPSSVVMLHEQTTTPVVNSRHLNSLSRHFPASVLSQEPREESRPLSHALREDRT 78

Query: 583 YQAALDRTQIDNDTSLNQEKKEHGSDKYLKDFERQLLYSPGLW-YLSPPSQRENRVSSLD 407
            Q  L+R Q D   S  +++K          FE+QLL+S GLW  L  P   E ++  + 
Sbjct: 79  SQLTLERRQFDELVSSREDEK----------FEQQLLHSAGLWNLLISPLTAETKLPPV- 127

Query: 406 MQSMPSDTDEELHVKAYDLLALAKQAVLVSKQAASLIVDSNSNLHNANELIPSFGMNDIS 227
              +P   D EL     D++ALA++A+  SKQAA L  D+ +N  +      S   + +S
Sbjct: 128 ---VPPLADAEL----CDIVALAQKALSASKQAALLADDTEANPSDNTRGSLSTS-SSMS 179

Query: 226 PPEKENIVRSTRLLERQSKKRRAPKSAPLGDE--ISSLRTTDRHHKTSLIDLSDPLRLFL 53
            PEK  IVRS R LER++K RRAPKS  + +E  +       +  K   +D  D L+LFL
Sbjct: 180 LPEKGAIVRSKRQLERRAKNRRAPKSNDVDNEGYVPQKINAKKKFKQG-VDTDDALQLFL 238

Query: 52  SGAEARQLLTAKEEKEL 2
            G E +QLLTAKEE EL
Sbjct: 239 WGPETKQLLTAKEEAEL 255


>ref|XP_006354351.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           [Solanum tuberosum]
          Length = 562

 Score =  119 bits (299), Expect = 9e-25
 Identities = 95/258 (36%), Positives = 139/258 (53%), Gaps = 6/258 (2%)
 Frame = -3

Query: 757 KHQLRNAHPLSVAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQRDQFRSLLHL-REEKP 584
           K QLRN    SV +LHE               RH PAS +  EQ+ + R  LHL +EEK 
Sbjct: 18  KTQLRNCSS-SVLMLHEHAAPVLSSVPHAYLGRHVPASAIGPEQQFENRLQLHLVKEEKT 76

Query: 583 YQAALDRTQIDNDTSLNQEKKEHGSDKYLKDFERQLLYSPGLWYLSPPSQRENRVS-SLD 407
             A +DR  +D  +S  +E     S++ +   + QLL  PG  Y  PP   + +   S +
Sbjct: 77  SLATIDRRLVDAASSELEENDAVDSEQNINALQVQLLRCPGPSYSFPPYYLKGKGPLSPN 136

Query: 406 MQSMPSDTDEELHVKAYDLLALAKQAVLVSKQAASLIVDSNSNLHNANELIPSFGMNDIS 227
            + + S  D+ ++ + + ++ALA++A+L S++AA L  DS   L ++N   P+F   ++ 
Sbjct: 137 KEPLHSKGDKLMNFEPHSVVALARKALLASREAALLAEDSKL-LDDSN--FPNFLSTNLV 193

Query: 226 PPE--KENIVRSTRLLERQSKKRRAPKSAPLGDEISSLRTTDRHHKTS-LIDLSDPLRLF 56
             +  ++  VRSTR  ERQS+KR APK      E +     D   K +  IDL+DPLR+F
Sbjct: 194 DDKLKEQRTVRSTRFTERQSRKRGAPKPTQQVQETNRSGRPDVRRKVNESIDLNDPLRMF 253

Query: 55  LSGAEARQLLTAKEEKEL 2
           L G E +QLLTAKEE EL
Sbjct: 254 LWGPETKQLLTAKEESEL 271


>gb|EYU34473.1| hypothetical protein MIMGU_mgv1a003862mg [Mimulus guttatus]
          Length = 559

 Score =  118 bits (296), Expect = 2e-24
 Identities = 91/250 (36%), Positives = 129/250 (51%), Gaps = 8/250 (3%)
 Frame = -3

Query: 727 SVAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQRDQFRSLLHLREEKPYQAALDRTQID 551
           SV +LHE               RH   SVL Q+QR++ R LL L+++  +Q   DR Q+ 
Sbjct: 29  SVLLLHEQVTPALTSLSTPSLARHTTTSVLIQDQRNESRPLLSLKDDNTFQQTFDRRQMV 88

Query: 550 N---DTSLNQEKKEHGSDKYLKDFERQLLYSPGLWYL-SPPSQRENRVSSLDMQSMPSDT 383
                +S N+   +   D+Y  D + QLL  P LWYL S   ++E+   +    S+PS  
Sbjct: 89  TTPASSSSNEGNDKIDPDQYDNDLQLQLLRRPELWYLWSSLQKKEHPFPTTTPNSLPSTA 148

Query: 382 DEELHVKAYDLLALAKQAVLVSKQAASLIVDSN--SNLHNANELIPSFGMNDISPPEKEN 209
           +     +A  +LALA++A    K+AAS+  D+    N  +   L+ S           + 
Sbjct: 149 ENVTGAEANHVLALAREAFSACKEAASIAEDARLYDNSSSTRSLVGS---------PVQR 199

Query: 208 IVRSTRLLERQSKKRRAPKSAPLGDEISSLRTTDRHHKTSL-IDLSDPLRLFLSGAEARQ 32
           IVRS R LERQ+K RRAPK      E++  R  + H K+S   D +DPLRLFL G E  Q
Sbjct: 200 IVRSKRRLERQAK-RRAPKPQLEDQEMNHRRKLEPHKKSSEGYDPNDPLRLFLWGPETTQ 258

Query: 31  LLTAKEEKEL 2
           LL+AKEE +L
Sbjct: 259 LLSAKEEADL 268


>ref|XP_004304450.1| PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like
           [Fragaria vesca subsp. vesca]
          Length = 554

 Score =  118 bits (296), Expect = 2e-24
 Identities = 110/269 (40%), Positives = 141/269 (52%), Gaps = 15/269 (5%)
 Frame = -3

Query: 763 PSKHQLRNAHPL-------SVAVLHEXXXXXXXXXXXXXXTRHFPASVL-QEQRDQFRSL 608
           PS  QLR  HPL       SV +LHE              TRHFP SVL QEQRD+F+ L
Sbjct: 15  PSTTQLR--HPLPPSSPSTSVLMLHEQAAPAVTSVPTSFITRHFPTSVLLQEQRDEFKPL 72

Query: 607 LHL-REEKPYQAALDRTQIDNDTSLNQEKKEHGSDKYLKDFERQLLYSPGLWYLSPPSQR 431
           LH+ +EEK  QA LDR QI+N T+  ++       K +KDF RQL       +++P    
Sbjct: 73  LHIFKEEKASQATLDRIQIENTTA-EEDFNIDDFYKLVKDF-RQL-------HVTPSQIG 123

Query: 430 ENRVSSLDMQSMPSDTDEELH--VKAYDLLALAKQAVLVSKQAASLIVDSNSNLHNANEL 257
           EN  +     ++ S+T   +H  V+  D+L LAK A+  S +AASL   S S     NE 
Sbjct: 124 ENSPTG---SALESNTTANVHMDVEPSDVLTLAKHALSASLEAASLAETSKSISAGLNES 180

Query: 256 IPSFGMNDISPPEKENIVRSTRLLERQSK---KRRAPKSAPLGDEISSLRTTDRHHK-TS 89
             S G+       +E  VRST+LLER+ K   KR    S     E SS  ++D   K   
Sbjct: 181 T-SLGLG-----WEEETVRSTQLLERRRKRLKKRNLLNSKVPNYENSSSNSSDLRRKYRE 234

Query: 88  LIDLSDPLRLFLSGAEARQLLTAKEEKEL 2
            ++ +DPLRLFL G E RQLLT KEE EL
Sbjct: 235 GLNPNDPLRLFLWGPETRQLLTLKEETEL 263