BLASTX nr result
ID: Papaver27_contig00019818
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver27_contig00019818
(5010 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 459 0.0
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 345 e-170
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 396 e-169
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta... 442 e-164
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 413 e-162
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 429 e-161
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 428 e-161
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 347 e-158
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 414 e-157
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 436 e-149
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 306 e-145
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 441 e-142
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 452 e-140
emb|CAB72467.1| putative protein [Arabidopsis thaliana] 449 e-135
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga... 333 e-134
emb|CCA66188.1| hypothetical protein [Beta vulgaris subsp. vulga... 322 e-133
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali... 368 e-133
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 379 e-132
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 335 e-132
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 432 e-130
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
thaliana]
Length = 1223
Score = 459 bits (1180), Expect(3) = 0.0
Identities = 234/631 (37%), Positives = 362/631 (57%), Gaps = 7/631 (1%)
Frame = -1
Query: 2013 FFNKSKFMKEINSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLI 1834
FF K K INST + L+ KK E+ D+RPI+CCNV+YK I+KIIA R+K VL I
Sbjct: 499 FFTKGFLPKGINSTILALIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFI 558
Query: 1833 HPSQSAFVSGRSIQDNILLAHEIVRNYHREVGTPRCTLKIDLKKAYDTVNWQAILITLKK 1654
+QSAFV R + +N+LLA E+V++YH++ + RC +KID+ KA+D+V W ++
Sbjct: 559 AGNQSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTI 618
Query: 1653 MGFPELFVNWIGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSIIF 1474
+GFP F++WI +CIT+ +S+ +NG GYF +SRGLRQGC LSPYLFV+ M+++S +
Sbjct: 619 LGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCALSPYLFVICMDVLSKML 678
Query: 1473 QQQISQGKFGLHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLEMNI 1294
+ + FG HP+CK LTHL FADD++V G + + EF ++GL +++
Sbjct: 679 DKAAAARHFGYHPKCKTMGLTHLSFADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISL 738
Query: 1293 HKTSLFSSVVDADTLMEITSILDCSVEKLPIRYLGMPLLSTRLSYNDCLPLISRILSRIN 1114
K++++ + + A E+ S +LP+RYLG+PL++ RLS DCLPL+ ++ RI
Sbjct: 739 EKSTVYLAGLSATARNEVADRFPFSSGQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIG 798
Query: 1113 AWKAKFVAYPGRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDMGKKYC 934
+W ++F++Y GRL LI +VL + +W++ F LP++ I+E+ + FLW+G +M
Sbjct: 799 SWTSRFLSYAGRLNLISSVLWSICNFWLAAFRLPRKCIRELEKMCSAFLWSGTEMNSNKA 858
Query: 933 PVKWTSICLPVHEGGLGVRDIEVTNIAANLRHVWNLVSGKESIWTD*VNHNLLKGRNFWS 754
+ W +C P EGGLG+R ++ N L+ VW +VS S+W V+ +LL+ +FW
Sbjct: 859 KISWHMVCKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWE 918
Query: 753 V-PIPQDASWSWRRILEQRNVAKDLIMTVLGDGEDTIMLNDLWHPKGRLVDWVDD-NIIQ 580
V SW W+++L+ R VAK L +G+G+ T D W G+L++ D +I
Sbjct: 919 VKQTVSQGSWIWKKLLKYREVAKTLSKVEVGNGKQTSFWYDNWSDLGQLLERTGDRGLID 978
Query: 579 TWFPNGDSKVAEFIDQGQWCLTSCDDEAVLNVSNQV--TSVEFNLNERDKLIWTTSKN-- 412
+ + ++ Q V NV S + DK++W +
Sbjct: 979 LGISRRMTVEEAWTNRRQ----RRHRNDVYNVIEDALKKSWDTRTETEDKVLWRGKSDVF 1034
Query: 411 -GEFSLKDTYLTLSSSNDSPFWCDLVWFKYHILRHSFISWLALQGRLKTRAKLMQWGLMS 235
FS +DT+ S++ W ++WF + ++SF SWLA GRL T +++ W
Sbjct: 1035 RTTFSTRDTWHHTRSTSARVPWHKVIWFSHATPKYSFCSWLAAHGRLPTGDRMINWANGI 1094
Query: 234 TAPCPFCEDTVETESHLFHGCNFASQIWKGL 142
C FC+ T+ET HLF C+F S IW L
Sbjct: 1095 ATDCIFCQGTLETRDHLFFTCSFTSVIWVDL 1125
Score = 157 bits (396), Expect(3) = 0.0
Identities = 108/340 (31%), Positives = 164/340 (48%), Gaps = 12/340 (3%)
Frame = -2
Query: 2993 QDFSVCVQDAQLMDLPFSGCFYTWFNKQGATRIGSKLDRILVNIEWLDQFVNSKAEFLNP 2814
+DF + L D+ G +TW NK+ I KLDR+L+N W F S + F
Sbjct: 166 RDFQQVINYCSLTDMAAQGPLFTWCNKREHGLIMKKLDRVLINDCWNQTFSQSYSVFEAG 225
Query: 2813 GVSGHSPGVATIFDK---RKHGPLPFRFFNFLAEEADFLDLVRSVWTEK----IRGNPMF 2655
G S H ++ + + G PF+F N L + DF +V + W + + + +F
Sbjct: 226 GCSDHLRCRISLNSEAGNKVQGLKPFKFVNALTDMEDFKPMVSTYWKDTEPLILSTSTLF 285
Query: 2654 VFTTKLNKVKAAIIAWKKMRFKNLSEQVFEAKKELEEVQKQIQVNPLCPHLAQKEKVVVR 2475
F+ L +K I + + R NLS++ EA K L Q NP + ++E
Sbjct: 286 RFSKNLKGLKPKIRSMARDRLGNLSKKANEAYKILCAKQHVNLTNPSSMAM-EEENAAYS 344
Query: 2474 HYSKVARYEESEKHQKSRVQWLKLGDSNTSFFHYSIKERRSRNNISTLKSQNNILLEDDK 2295
+ +VA EE QKS++ W ++GD NT FH + R + N I + S + I+
Sbjct: 345 RWDRVAILEEKYLKQKSKLHWCQVGDQNTKAFHRAAAAREAHNTIREILSNDGIVKTKGD 404
Query: 2294 EIAEECIDFFSKLY-----DEEGRKVTDGSGIESLKFDKIVDEASCVELTRPVSRDEIIE 2130
EI E FF + D EG +T+ + ++ +A L RPV+ +EI +
Sbjct: 405 EIKAEAERFFREFLQLIPNDFEGVTITELQQLLPVR----CSDADQQSLIRPVTAEEIRK 460
Query: 2129 ALSSIGSGKAPGPDGFTSLFFKVCWVVIGDDFVVAVQFFF 2010
L + S K+PGPDG+TS FFK W +IGD+F +AVQ FF
Sbjct: 461 VLFRMPSDKSPGPDGYTSEFFKATWEIIGDEFTLAVQSFF 500
Score = 83.2 bits (204), Expect(3) = 0.0
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 4/144 (2%)
Frame = -1
Query: 3459 WNIRGSNDPLKQVEVSSLIRSSEFSIIGLVETHVQSINASRIRNKIMPKWHFIDNYNNDD 3280
WN+RG N K + I + F LVET V+ S++ K+ W + NY ++
Sbjct: 6 WNVRGLNKSSKHSVIKKWIEENNFQFGCLVETRVKESKVSQLVGKLFKDWSILTNYEHNR 65
Query: 3279 SGRIWIGWNLDSVKVSLIHSSSQVIFVEVDTVE-NISFVAAFVYENNDGVLRRALWTDIT 3103
GRIW+ W +V++S I+ S Q++ V + F +FVY +N R+ LW+++
Sbjct: 66 RGRIWVLWR-KNVRLSPIYKSCQLLTCSVKLEDRQDEFFCSFVYASNYVEERKVLWSELK 124
Query: 3102 AFSQ---INSKPWIVLGDFNSYIE 3040
I KPW +LGDFN ++
Sbjct: 125 DHYDSPIIRHKPWTLLGDFNETLD 148
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 345 bits (885), Expect(3) = e-170
Identities = 168/440 (38%), Positives = 258/440 (58%)
Frame = -1
Query: 2013 FFNKSKFMKEINSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLI 1834
FF K IN T +TL+ K D D+RPIACC+ +YK I+KI+ R++ V+ ++
Sbjct: 487 FFENGFMHKPINCTAVTLIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITEVV 546
Query: 1833 HPSQSAFVSGRSIQDNILLAHEIVRNYHREVGTPRCTLKIDLKKAYDTVNWQAILITLKK 1654
+Q+ F+ R I DNILLA E++R Y+R +PRC +K+D++KAYD+V W + LK+
Sbjct: 547 DCAQTGFIPERHIGDNILLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKE 606
Query: 1653 MGFPELFVNWIGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSIIF 1474
+GFP +F+ WI C+ + YSIL+NG P F A +GLRQG PLSP+LF + ME +S
Sbjct: 607 LGFPSMFIRWIMACVKTVSYSILLNGIPSIPFDAQKGLRQGDPLSPFLFALSMEYLSRCM 666
Query: 1473 QQQISQGKFGLHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLEMNI 1294
+F HP+C+ KLTHL FADD+L+F + S+ + + F+ +GL+ +I
Sbjct: 667 GNMCKDPEFNFHPKCERIKLTHLMFADDLLMFARADASSISKIMAAFNSFSKASGLQASI 726
Query: 1293 HKTSLFSSVVDADTLMEITSILDCSVEKLPIRYLGMPLLSTRLSYNDCLPLISRILSRIN 1114
K+ ++ V + ++ + + LP RYLG+PL S +L+++ C PLI +I +R
Sbjct: 727 EKSCIYFGGVCHEEAEQLADRIQMPIGSLPFRYLGVPLASKKLNFSQCKPLIDKITTRAQ 786
Query: 1113 AWKAKFVAYPGRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDMGKKYC 934
W A ++Y GRL L+KT+L M YW F LPK++IK + + +KFLW G
Sbjct: 787 GWVAHLLSYAGRLQLVKTILYSMQNYWGQIFPLPKKLIKAVETTCRKFLWTGTVDTSYKA 846
Query: 933 PVKWTSICLPVHEGGLGVRDIEVTNIAANLRHVWNLVSGKESIWTD*VNHNLLKGRNFWS 754
PV W + P GGL V ++ + N AA L+ +W + ++ +W VN +K +N +
Sbjct: 847 PVAWDFLQQPKSTGGLNVTNMVLWNKAAILKLLWAITFKQDKLWVRWVNAYYIKRQNIEN 906
Query: 753 VPIPQDASWSWRRILEQRNV 694
V + + SW R+I E R +
Sbjct: 907 VTVSSNTSWILRKIFESREL 926
Score = 203 bits (517), Expect(3) = e-170
Identities = 113/347 (32%), Positives = 188/347 (54%), Gaps = 1/347 (0%)
Frame = -2
Query: 3047 ILKPSDKVGGAEVRPSHYQDFSVCVQDAQLMDLPFSGCFYTWFNKQ-GATRIGSKLDRIL 2871
+ D++ G +V + D V AQL++ P +G FY+W NK GA RI S++D+
Sbjct: 144 VYSAQDRLNGNDVSEAETSDLRSFVLKAQLLEAPTTGLFYSWNNKSIGADRISSRIDKSF 203
Query: 2870 VNIEWLDQFVNSKAEFLNPGVSGHSPGVATIFDKRKHGPLPFRFFNFLAEEADFLDLVRS 2691
VN+ W++Q+ + E+ G+S HSP + + + G PF+F NFLA++ F+++V+
Sbjct: 204 VNVAWINQYPDVVVEYREAGISDHSPLIFNLATQHDEGGRPFKFLNFLADQNGFVEVVKE 263
Query: 2690 VWTEKIRGNPMFVFTTKLNKVKAAIIAWKKMRFKNLSEQVFEAKKELEEVQKQIQVNPLC 2511
W M +L VK A+ ++ +F QV E +++L VQ +V+ +
Sbjct: 264 AWGSANHRFKMKNIWVRLQAVKRALKSFHSKKFSKAHCQVEELRRKLAAVQALPEVSQV- 322
Query: 2510 PHLAQKEKVVVRHYSKVARYEESEKHQKSRVQWLKLGDSNTSFFHYSIKERRSRNNISTL 2331
L ++EK ++ K + +ES QKSR+QWL LGDSN+ FF +IK R++RN I L
Sbjct: 323 SELQEEEKDLIAQLRKWSTIDESILKQKSRIQWLSLGDSNSKFFFTAIKVRKARNKIVLL 382
Query: 2330 KSQNNILLEDDKEIAEECIDFFSKLYDEEGRKVTDGSGIESLKFDKIVDEASCVELTRPV 2151
++ L ++ EI E +F+ +L ++ + + ++ + SC +L +P+
Sbjct: 383 QNDRGDQLTENTEIQNEICNFYRRLLGTSSSQL-EAIDLHVVRVGAKLSATSCAQLVQPI 441
Query: 2150 SRDEIIEALSSIGSGKAPGPDGFTSLFFKVCWVVIGDDFVVAVQFFF 2010
+ EI +AL+ I KAPG DGF S+FFK W+VI + + FF
Sbjct: 442 TIQEIDQALADIDDTKAPGLDGFNSVFFKKSWLVIKQEIYEGILDFF 488
Score = 102 bits (253), Expect(3) = e-170
Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Frame = -1
Query: 3471 KIAIWNIRGSNDPLKQVEVSSLIRSSEFSIIGLVETHVQSINASRIRNKIMPKWHFIDNY 3292
KI WN+RG NDP+K EV + S + S+ L ET V+ N+ +I+ K +W +I+NY
Sbjct: 2 KITTWNVRGLNDPIKVKEVKHFLHSQKISLCSLFETRVRQQNSGKIQKKFGNRWSWINNY 61
Query: 3291 NNDDSGRIWIGWNLDSVKVSLIHSSSQVIFVEVDTVENIS-FVAAFVYENNDGVLRRALW 3115
GRIW+GW + V ++++ + QVI +EV ++ F A VY + R+ LW
Sbjct: 62 ACSPRGRIWVGWLNNDVNINVLSVTEQVITMEVKNSYGLNMFKMAAVYGLHTIADRKVLW 121
Query: 3114 TDITAFSQINSKPWIVLGDFNSYIEA 3037
++ F + +P I++GD+N+ A
Sbjct: 122 EELYNFVSVCHEPCILIGDYNAVYSA 147
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 396 bits (1018), Expect(3) = e-169
Identities = 209/627 (33%), Positives = 345/627 (55%), Gaps = 5/627 (0%)
Frame = -1
Query: 2013 FFNKSKFMKEINSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLI 1834
FF+ +K+ N+T I L+ K NP+ DFRPI+C N +YK I +++ R++ +L +I
Sbjct: 493 FFSSGCLLKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVI 552
Query: 1833 HPSQSAFVSGRSIQDNILLAHEIVRNYHREVGTPRCTLKIDLKKAYDTVNWQAILITLKK 1654
+QSAF+ GRS+ +N+LLA ++V Y+ +PR LK+DLKKA+D+V W+ ++ L+
Sbjct: 553 SSAQSAFLPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRA 612
Query: 1653 MGFPELFVNWIGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSIIF 1474
+ PE F+NWI CI++P +++ ING G+F +++GLRQG PLSPYLFV+ ME S +
Sbjct: 613 LAIPEKFINWISQCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLL 672
Query: 1473 QQQISQGKFGLHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLEMNI 1294
+ G HP+ ++HL FADDV++FF G + + + +F +++GL++N
Sbjct: 673 HSRYESGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHGICETLDDFASWSGLKVNK 732
Query: 1293 HKTSLFSSVVDADTLMEITSILDCSVEKLPIRYLGMPLLSTRLSYNDCLPLISRILSRIN 1114
K+ L+ + ++ + + LPIRYLG+PL++ +L + PL+ +I +R
Sbjct: 733 DKSHLYLAGLN-QLESNANAAYGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFR 791
Query: 1113 AWKAKFVAYPGRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDMGKKYC 934
+W K +++ GR+ LI +V+ G + +WMS F+LPK IK I S+ +FLW+G K
Sbjct: 792 SWVNKCLSFAGRIQLISSVIFGSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGI 851
Query: 933 PVKWTSICLPVHEGGLGVRDIEVTNIAANLRHVWNLVSGKESIWTD*VNHNLLKGRNFWS 754
V W ++CLP EGGLG+R + N ++R +W L K+S+W D + + L +FW+
Sbjct: 852 KVSWAALCLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWA 911
Query: 753 VPIPQDASWSWRRILEQRNVAKDLIMTVLGDGEDTIMLNDLWHPKGRLVDWVDDNIIQTW 574
V Q SW+W+R+L R +A ++ +G+G D W G L + D +
Sbjct: 912 VEGGQSDSWTWKRLLSLRPLAHQFLVCKVGNGLKADYWYDNWTSLGPLFRIIGDIGPSSL 971
Query: 573 FPNGDSKVAEFIDQGQWCLTSCDDEAVLNVSNQVTSVEF-NLNERDKLIWTTSKNG---- 409
+KVA + W L + + + +V + + D + S NG
Sbjct: 972 RVPLLAKVASAFSEDGWRLPVSRSAPAKGIHDHLCTVPVPSTAQEDVDRYEWSVNGFLCQ 1031
Query: 408 EFSLKDTYLTLSSSNDSPFWCDLVWFKYHILRHSFISWLALQGRLKTRAKLMQWGLMSTA 229
FS T+ + W +WFK + +++F W++ RL TR +L WG + +
Sbjct: 1032 GFSAAKTWEAIRPKATVKSWASSIWFKGAVPKYAFNMWVSHLNRLLTRQRLASWGHIQSD 1091
Query: 228 PCPFCEDTVETESHLFHGCNFASQIWK 148
C C E+ HL C F++Q+W+
Sbjct: 1092 ACVLCSFASESRDHLLLICEFSAQVWR 1118
Score = 164 bits (415), Expect(3) = e-169
Identities = 107/329 (32%), Positives = 157/329 (47%), Gaps = 1/329 (0%)
Frame = -2
Query: 2993 QDFSVCVQDAQLMDLPFSGCFYTWFNKQGATRIGSKLDRILVNIEWLDQFVNSKAEFLNP 2814
+DF C+ A+L DL + G +TW+NK T + K+DRILVN W F +S F +
Sbjct: 167 RDFRDCLLAAELSDLRYKGNTFTWWNKSHTTPVAKKIDRILVNDSWNALFPSSLGIFGSL 226
Query: 2813 GVSGHSPGVATIFDKRKHGPLPFRFFNFLAEEADFLDLVRSVW-TEKIRGNPMFVFTTKL 2637
S H + + PF+FFN+L + DFL+LVR W T + G+ MF + KL
Sbjct: 227 DFSDHVSCGVVLEETSIKAKRPFKFFNYLLKNLDFLNLVRDNWFTLNVVGSSMFRVSKKL 286
Query: 2636 NKVKAAIIAWKKMRFKNLSEQVFEAKKELEEVQKQIQVNPLCPHLAQKEKVVVRHYSKVA 2457
+K I + ++ + L ++ EA L Q + +P P A E R + +
Sbjct: 287 KALKKPIKDFSRLNYSELEKRTKEAHDFLIGCQDRTLADPT-PINASFELEAERKWHILT 345
Query: 2456 RYEESEKHQKSRVQWLKLGDSNTSFFHYSIKERRSRNNISTLKSQNNILLEDDKEIAEEC 2277
EES QKSR+ W GD NT +FH R S N+IS L N L++ + I + C
Sbjct: 346 AAEESFFRQKSRISWFAEGDGNTKYFHRMADARNSSNSISALYDGNGKLVDSQEGILDLC 405
Query: 2276 IDFFSKLYDEEGRKVTDGSGIESLKFDKIVDEASCVELTRPVSRDEIIEALSSIGSGKAP 2097
+F L +E +L A EL S ++I AL S+ K+
Sbjct: 406 ASYFGSLLGDEVDPYLMEQNDMNLLLSYRCSPAQVCELESTFSNEDIRAALFSLPRNKSC 465
Query: 2096 GPDGFTSLFFKVCWVVIGDDFVVAVQFFF 2010
GPDGFT+ FF W ++G + A++ FF
Sbjct: 466 GPDGFTAEFFIDSWSIVGAEVTDAIKEFF 494
Score = 86.3 bits (212), Expect(3) = e-169
Identities = 47/143 (32%), Positives = 79/143 (55%), Gaps = 4/143 (2%)
Frame = -1
Query: 3459 WNIRGSNDPLKQVEVSSLIRSSEFSIIGLVETHVQSINASRIRNKIMPKWHFIDNYNNDD 3280
WNIRG N+ + +++++ G++ETHV+ + N ++P W F++NY D
Sbjct: 8 WNIRGFNNVSHRSGFKKWVKANKPIFGGVIETHVKQPKDRKFINALLPGWSFVENYAFSD 67
Query: 3279 SGRIWIGWNLDSVKVSLIHSSSQVIFVEVDTVENISF-VAAFVYENNDGVLRRALWTDI- 3106
G+IW+ W+ SV+V ++ S Q+I EV + S+ + + VY N+ R+ LW +I
Sbjct: 68 LGKIWVMWD-PSVQVVVVAKSLQMITCEVLLPGSPSWIIVSVVYAANEVASRKELWIEIV 126
Query: 3105 --TAFSQINSKPWIVLGDFNSYI 3043
I +PW+VLGDFN +
Sbjct: 127 NMVVSGIIGDRPWLVLGDFNQVL 149
>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1352
Score = 442 bits (1137), Expect(3) = e-164
Identities = 231/641 (36%), Positives = 372/641 (58%), Gaps = 13/641 (2%)
Frame = -1
Query: 2013 FFNKSKFMKEINSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLI 1834
FF K K IN+T + L++KK S + D+RPI+CCNV+YK ++K++A R+K +L + I
Sbjct: 646 FFLKGFLPKGINTTILALISKKHEVSGMKDYRPISCCNVLYKIVSKLMANRLKEILPASI 705
Query: 1833 HPSQSAFVSGRSIQDNILLAHEIVRNYHREVGTPRCTLKIDLKKAYDTVNWQAILITLKK 1654
P+QSAF+ R + +N+LLA E+V++YH+E + R LKID+ KA+D V W ++ LK
Sbjct: 706 APNQSAFIKDRLMMENLLLASELVKDYHKESISSRSALKIDISKAFDFVQWPFLINVLKA 765
Query: 1653 MGFPELFVNWIGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSIIF 1474
+ PE+F++WI LCI + +S+ +NG G+F + RGLRQGC LSPYL+V+ M ++S +
Sbjct: 766 IHLPEMFIHWIELCIGTASFSVQVNGELSGFFRSERGLRQGCSLSPYLYVICMNVLSCML 825
Query: 1473 QQQISQGKFGLHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLEMNI 1294
+ + K HPRC+ LTHLCFADD++VF G+ + +F A + L++++
Sbjct: 826 DKAAVEKKISYHPRCRNMNLTHLCFADDIMVFSDGTSKSIQGTLAIFEKFAAMSWLKISL 885
Query: 1293 HKTSLFSSVVDADTLMEITSILDCSVEKLPIRYLGMPLLSTRLSYNDCLPLISRILSRIN 1114
K+++F + + + I + LP++YLG+PLL+ R++ +D LPL+ +I +RI
Sbjct: 886 EKSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARIT 945
Query: 1113 AWKAKFVAYPGRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDMGKKYC 934
+W +F+++ GRL LIK+VL+ + +W+S F LPK ++EI +F FLW+G D+ K
Sbjct: 946 SWTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKA 1005
Query: 933 PVKWTSICLPVHEGGLGVRDIEVTNIAANLRHVWNLVSGKESIWTD*VNHNLLKGRNFWS 754
+ W+ +C EGGLG++ ++ N + L+ +W ++S ++S+W VN +L++ FWS
Sbjct: 1006 KIAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWS 1065
Query: 753 VPIPQD-ASWSWRRILEQRNVAKDLIMTVLGDGEDTIMLNDLWHPKGRLVDWVDD-NIIQ 580
V SW WR+IL+QR+ A+ + G T +D W P GRL + I
Sbjct: 1066 VKENTGLGSWLWRKILKQRDKARLFHRMEVRSGTFTSFWHDHWCPLGRLHQHMGSRGTID 1125
Query: 579 TWFPNGDSKVAEFIDQGQWCLTSCDDEAVLNVSNQVTS-VEFNLNER----DKLIWTTSK 415
PN ++ VAE ++ T + NQ+ S +E +R D+ +W +
Sbjct: 1126 LGIPN-NATVAEVMN------THRRKRHRADFLNQIKSQIELARQDRSTDGDRSLWKQKE 1178
Query: 414 N---GEFSLKDTYLTLSSSNDSPFWCDLVWFKYHILRHSFISWLALQGRLKTRAKLMQWG 244
+ FS T+ + S + W VWF ++SF++WLA RL T K+ +W
Sbjct: 1179 DTFKSSFSSSKTWQQIRSISLRCDWYRGVWFSASTPKYSFVTWLAFHNRLTTSDKICKWN 1238
Query: 243 LMSTAPCPFCEDTVETESHLFHGCNFASQIWKGL---LLNG 130
+ C FC + +ET HLF C ++S +W L LLNG
Sbjct: 1239 SGARYDCVFCGEELETRDHLFFSCPYSSHVWFSLTKGLLNG 1279
Score = 110 bits (274), Expect(3) = e-164
Identities = 92/337 (27%), Positives = 130/337 (38%), Gaps = 4/337 (1%)
Frame = -2
Query: 3005 PSHYQDFSVCVQDAQLMDLPFSGCFYTWFNKQGATRIGSKLDRILVNIEWLDQFVNSKAE 2826
P +DF V+ L D+ + G +TW NK+ + KLDR+LVN W +F +
Sbjct: 399 PQGMRDFQDVVRYCSLADMSYHGPVFTWCNKREEGLVNKKLDRVLVNEVWTRKFPAVYSI 458
Query: 2825 FLNPGVSGHSPGVATIFDKRKHGPLPFRFFNFLAEEADFLDLVRSVWTEKIR----GNPM 2658
F G+S H PF+F N L +FL +V+ W + + M
Sbjct: 459 FEAGGISDHLRCRIKFASGNTQPKGPFKFNNVLTTLPEFLQIVKDFWDGTLALFHPTSAM 518
Query: 2657 FVFTTKLNKVKAAIIAWKKMRFKNLSEQVFEAKKELEEVQKQIQVNPLCPHLAQKEKVVV 2478
F F+ KL +K + + + NLS +V EA L
Sbjct: 519 FRFSKKLKGLKPILKSLGRSTLHNLSVRVAEAYTSLY----------------------- 555
Query: 2477 RHYSKVARYEESEKHQKSRVQWLKLGDSNTSFFHYSIKERRSRNNISTLKSQNNILLEDD 2298
EE QKS++ WL +GD N +FH S+K R + N+I +
Sbjct: 556 --------LEEGYLQQKSKLHWLDVGDKNNKYFHNSVKARVAMNSIREI----------- 596
Query: 2297 KEIAEECIDFFSKLYDEEGRKVTDGSGIESLKFDKIVDEASCVELTRPVSRDEIIEALSS 2118
+C D GR T D I +EA
Sbjct: 597 -----QCTD---------GRVCTS--------HDDIKEEAH------------------- 615
Query: 2117 IGSGKAPGPDGFTSLFFKVCWVVIGDDFVVAVQFFFL 2007
K+PGPDG+T FFK W V+G D V+A+Q FFL
Sbjct: 616 ----KSPGPDGYTVEFFKTAWPVLGRDLVIAIQSFFL 648
Score = 78.6 bits (192), Expect(3) = e-164
Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Frame = -1
Query: 3378 GLVETHVQSINASRIRNKIMPKWHFIDNYNNDDSGRIWIGWNLDSVKVSLIHSSSQVIFV 3199
GL+ET V ASRI +K+ W + NY + GRIW+ W ++V+V+ ++ S Q+I
Sbjct: 270 GLIETRVDENRASRIISKVFRDWSSMTNYEHHRLGRIWVVWK-NTVRVTPVYKSGQLITC 328
Query: 3198 EVDTVENI-SFVAAFVYENNDGVLRRALWTDIT---AFSQINSKPWIVLGDFNSYIE 3040
V T EN F +F+Y +N RR LW D+ +K W++LGDFN ++
Sbjct: 329 SVLTEENAEDFFVSFIYASNYVDERRELWEDLRNHYDLPMFRNKGWMILGDFNEILD 385
Score = 70.1 bits (170), Expect = 1e-08
Identities = 39/124 (31%), Positives = 63/124 (50%)
Frame = -2
Query: 4307 KTVPVWLNLRKVPLYMWNETGLGNIASCVGTPIMLDKQTLNKTRMSYARVCVEVDANCDF 4128
KT+P+W+ ++ VP M++ GL + S VG PI L +T T+ A+V VEV+ + +
Sbjct: 3 KTMPLWVTVKNVPHSMFSWNGLSFLTSPVGNPIRLHPETELCTKFDEAKVFVEVNLSQEV 62
Query: 4127 PSSIPVYMDGELALEVVVEYPWKPPMCALCKTFNHSALKCKTTAAKAQLEKVAQAAKTKL 3948
P ++ E + V YPW PP C+ C + H C + E+V + L
Sbjct: 63 PKCFRFSIEDEEDVNVEFVYPWLPPKCSCCNKWGHLVDVCVSKPKSPLKERVME-----L 117
Query: 3947 DKGE 3936
++GE
Sbjct: 118 EEGE 121
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 413 bits (1061), Expect(2) = e-162
Identities = 228/631 (36%), Positives = 347/631 (54%), Gaps = 6/631 (0%)
Frame = -1
Query: 2013 FFNKSKFMKEINSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLI 1834
FF + + + NST +T+V KK N + +FRPI+CCN IYK I+K++A R++ +L I
Sbjct: 492 FFRSGRLLGQWNSTAVTMVPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWI 551
Query: 1833 HPSQSAFVSGRSIQDNILLAHEIVRNYHREVGTPRCTLKIDLKKAYDTVNWQAILITLKK 1654
PSQSAFV GR + +N+LLA E+V+ + + + R LK+DL+KA+D+V W I+ TLK
Sbjct: 552 SPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKA 611
Query: 1653 MGFPELFVNWIGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSIIF 1474
P FVNWI CITS +SI ++GS GYF S+GLRQG PLSP LFV+ ME++S +
Sbjct: 612 ANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQGDPLSPSLFVIAMEILSRLL 671
Query: 1473 QQQISQGKFGLHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLEMNI 1294
+ + S G G HP+ +++ L FADD+++F+ G S+ +K+ + F +GLEMN
Sbjct: 672 ENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDGKASSLRGIKSVLESFKNLSGLEMNT 731
Query: 1293 HKTSLFSSVVDADTLMEITSILDCSVEKLPIRYLGMPLLSTRLSYNDCLPLISRILSRIN 1114
K++++++ ++ DT E T P RYLG+PLL +L +D LI +I +R N
Sbjct: 732 EKSAVYTAGLE-DTDKEDTLAFGFVNGTFPFRYLGLPLLHRKLRRSDYSQLIDKIAARFN 790
Query: 1113 AWKAKFVAYPGRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDMGKKYC 934
W K +++ GRL LI +V+ V +W+S FILPK +K I + +FLW +
Sbjct: 791 HWATKTLSFAGRLQLISSVIYSTVNFWLSSFILPKCCLKTIEQMCNRFLWGNDITRRGDI 850
Query: 933 PVKWTSICLPVHEGGLGVRDIEVTNIAANLRHVWNLVSGKESIWTD*VNHNLLKGRNFWS 754
V W + CLP EGGLG+R+ N NLR +W L + ++S+W + N L+ NFW+
Sbjct: 851 KVSWQNSCLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWN 910
Query: 753 VPIPQDASWSWRRILEQRNVAKDLIMTVLGDGEDTIMLNDLWHPKGRLVDWVDDNIIQTW 574
SW W+ IL R +AK + +G+G+ D W G L++ + + Q
Sbjct: 911 AEAASHHSWIWKAILGLRPLAKRFLRGAVGNGQLLSYWYDHWSNLGPLIEAIGASGPQLT 970
Query: 573 FPNGDSKVAEFIDQGQWCLTSC--DDEAVLNVSNQVTSVEFNLNER--DKLIW--TTSKN 412
+ + V E W L S + ++ N+ + + + +R D W S +
Sbjct: 971 GIHESAVVTEASSSTGWILPSARTRNASLANLRSTLLNSPAPSGDRGEDTYTWYIEGSSS 1030
Query: 411 GEFSLKDTYLTLSSSNDSPFWCDLVWFKYHILRHSFISWLALQGRLKTRAKLMQWGLMST 232
FS K T+ L + + W VW+K I +++F W+A RL RA+ W
Sbjct: 1031 TSFSSKLTWECLRQRDTTKLWAAAVWYKGCIPKYAFNFWVAHLNRLPVRARTTHWSTNRP 1090
Query: 231 APCPFCEDTVETESHLFHGCNFASQIWKGLL 139
+ C C+ ET HLF C S IW+ +L
Sbjct: 1091 SLCCVCQRETETRDHLFIHCTLGSLIWQQVL 1121
Score = 190 bits (483), Expect(2) = e-162
Identities = 120/362 (33%), Positives = 178/362 (49%), Gaps = 6/362 (1%)
Frame = -2
Query: 3077 LGLFLEILTPILKPSDKVGGAEVRPSHYQDFSVCVQDAQLMDLPFSGCFYTWFNKQGATR 2898
LG F + L P+ GG+ + ++F C+ + + DLPF G YTW+N Q
Sbjct: 141 LGDFNQSLDPV---DASTGGSRITRG-MEEFRECLLTSNISDLPFRGNHYTWWNNQENNP 196
Query: 2897 IGSKLDRILVNIEWLDQFVNSKAEFLNPGVSGHSPGVATIFDKRKHGPLPFRFFNFLAEE 2718
I K+DRILVN WL S F S H P I ++ PF+ NFL
Sbjct: 197 IAKKIDRILVNDSWLIASPLSYGSFCAMEFSDHCPSCVNISNQSGGRNKPFKLSNFLMHH 256
Query: 2717 ADFLDLVRSVWTE-KIRGNPMFVFTTKLNKVKAAIIAWKKMRFKNLSEQVFEAKKELEEV 2541
+F++ +R W +G+ MF + K +K I + + + L ++V +A + L+
Sbjct: 257 PEFIEKIRVTWDRLAYQGSAMFTLSKKSKFLKGTIRTFNREHYSGLEKRVVQAAQNLKTC 316
Query: 2540 QKQIQVNPLCPHLAQKEKVVVRHYSKVARYEESEKHQKSRVQWLKLGDSNTSFFHYSIKE 2361
Q + P +LA EK R ++++A EE QKSRV WLK GDSNT+FFH +
Sbjct: 317 QNNLLAAP-SSYLAGLEKEAHRSWAELALAEERFLCQKSRVLWLKCGDSNTTFFHRMMTA 375
Query: 2360 RRSRNNISTLKSQNNILLEDDKEIAEECIDFFSKLYDEEGRKVTDGSGIESLKFDKIVDE 2181
RR+ N I L Q +E+ E+ C+DFF +L+ ++ GI + +
Sbjct: 376 RRAINEIHYLLDQTGRRIENTDELQTHCVDFFKELFGSSSHLIS-AEGISQI---NSLTR 431
Query: 2180 ASCVELTRPVSRDEIIEA-----LSSIGSGKAPGPDGFTSLFFKVCWVVIGDDFVVAVQF 2016
C E TR + E+ EA ++ S K+PGPDG+TS FFK W ++G + AVQ
Sbjct: 432 FKCDENTRQLLEAEVSEADIKSEFFALPSNKSPGPDGYTSEFFKKTWSIVGPSLIAAVQE 491
Query: 2015 FF 2010
FF
Sbjct: 492 FF 493
Score = 77.4 bits (189), Expect = 6e-11
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Frame = -1
Query: 3459 WNIRGSNDPLKQVEVSSLIRSSEFSIIGLVETHVQSINASRIRNKIMPKWHFIDNYNNDD 3280
WN+RG N+ +++ + S+ ++ET V+ A R P W + NY
Sbjct: 7 WNVRGFNNSVRRRNFRKWFKLSKALFGSILETRVKEHRARRSLLSSFPGWKSVCNYEFAA 66
Query: 3279 SGRIWIGWNLDSVKVSLIHSSSQVIFVEVDTVE-NISFVAAFVYENNDGVLRRALWTD-- 3109
GRIW+ W+ +V+V+++ S Q I V + FV FVY N RR LW++
Sbjct: 67 LGRIWVVWD-PAVEVTVLSKSDQTISCTVKLPHISTEFVVTFVYAVNCRYGRRRLWSELE 125
Query: 3108 -ITAFSQINSKPWIVLGDFNSYIE 3040
+ A + KPWI+LGDFN ++
Sbjct: 126 LLAANQTTSDKPWIILGDFNQSLD 149
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 429 bits (1102), Expect(2) = e-161
Identities = 226/630 (35%), Positives = 350/630 (55%), Gaps = 4/630 (0%)
Frame = -1
Query: 2013 FFNKSKFMKEINSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLI 1834
FF+ + +K+ N+T + L+ K N + +FRPI+C N +YK I+K++ R++G+L ++I
Sbjct: 353 FFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVI 412
Query: 1833 HPSQSAFVSGRSIQDNILLAHEIVRNYHREVGTPRCTLKIDLKKAYDTVNWQAILITLKK 1654
SQSAF+ GRS+ +N+LLA E+V Y+R +PR LK+DLKKA+D+V W+ + L+
Sbjct: 413 GHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRA 472
Query: 1653 MGFPELFVNWIGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSIIF 1474
+ PE ++NWI CIT+P ++I +NG+ G+F +++GLRQG PLSPYLFV+ ME+ S +
Sbjct: 473 LAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLL 532
Query: 1473 QQQISQGKFGLHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLEMNI 1294
+ G HP+ ++HL FADDV++FF G S+ + + +F ++GL++N
Sbjct: 533 YSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNK 592
Query: 1293 HKTSLFSSVVDADTLMEITSILDCSVEKLPIRYLGMPLLSTRLSYNDCLPLISRILSRIN 1114
K+ LF + +D + ++ PIRYLG+PL+ +L D PL+ ++ +R+
Sbjct: 593 DKSQLFQAGLDLSERI-TSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLR 651
Query: 1113 AWKAKFVAYPGRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDMGKKYC 934
+W +K +++ GR LI +V+ G++ +WMS F+LPK IK+I S+ KFLWAG G+K
Sbjct: 652 SWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSS 711
Query: 933 PVKWTSICLPVHEGGLGVRDIEVTNIAANLRHVWNLVSGKESIWTD*VNHNLLKGRNFWS 754
V W CLP EGGLG R N LR +W L S+W H+ L +FW
Sbjct: 712 KVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQ 771
Query: 753 VPIPQDASWSWRRILEQRNVAKDLIMTVLGDGEDTIMLNDLWHPKGRLVDWVDDNIIQTW 574
V Q W+W+ +L R +A+ I +G+G D W G L+ ++ D +
Sbjct: 772 VNALQTDPWTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPL 831
Query: 573 FPNGDSKVAEFIDQGQWCLTSCDDEAVLNVSNQVTSV--EFNLNERDKLIWTTSKNG--E 406
+KVA+ ID W L ++ + + S+ L D W
Sbjct: 832 RIPFSAKVADAIDGSGWRLPLSRSLTADSILSHLASLPPPSPLMVSDSYSWCVDDVDCQG 891
Query: 405 FSLKDTYLTLSSSNDSPFWCDLVWFKYHILRHSFISWLALQGRLKTRAKLMQWGLMSTAP 226
FS T+ L W VWFK + +H+F W A RL TR +L+ WGL+S+A
Sbjct: 892 FSAAKTWEVLRPRRPVKRWAKSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAE 951
Query: 225 CPFCEDTVETESHLFHGCNFASQIWKGLLL 136
C C ET HL C+F+SQ+W+ + L
Sbjct: 952 CCLCSFDTETRDHLLLLCDFSSQVWRMVFL 981
Score = 169 bits (429), Expect(2) = e-161
Identities = 101/329 (30%), Positives = 160/329 (48%), Gaps = 1/329 (0%)
Frame = -2
Query: 2993 QDFSVCVQDAQLMDLPFSGCFYTWFNKQGATRIGSKLDRILVNIEWLDQFVNSKAEFLNP 2814
+DF C+ + +L DL F G +TW+NK I KLDRIL N W + + +S F N
Sbjct: 27 RDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIAKKLDRILANDSWCNLYPSSHGLFGNL 86
Query: 2813 GVSGHSPGVATIFDKRKHGPLPFRFFNFLAEEADFLDLVRSVW-TEKIRGNPMFVFTTKL 2637
S H + PF+FFNFL + DFL++V W + + G+ M+ + KL
Sbjct: 87 DFSDHVSCGVVLEANGISAKRPFKFFNFLLKNEDFLNVVMDNWFSTNVVGSSMYRVSKKL 146
Query: 2636 NKVKAAIIAWKKMRFKNLSEQVFEAKKELEEVQKQIQVNPLCPHLAQKEKVVVRHYSKVA 2457
+K I + ++ + + + EA + L Q NP + A E R + ++
Sbjct: 147 KAMKKPIKDFSRLNYSGIELRTKEAHELLITCQNLTLANPSVSNAAL-ELEAQRKWVLLS 205
Query: 2456 RYEESEKHQKSRVQWLKLGDSNTSFFHYSIKERRSRNNISTLKSQNNILLEDDKEIAEEC 2277
EES HQ+SRV W GDSNT +FH + R+S N I++L N +L++ + I + C
Sbjct: 206 CAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSRKSFNTINSLVDSNGLLIDSQQGILDHC 265
Query: 2276 IDFFSKLYDEEGRKVTDGSGIESLKFDKIVDEASCVELTRPVSRDEIIEALSSIGSGKAP 2097
+ ++ +L + +L + C EL + + DEI A S+ K
Sbjct: 266 VTYYERLLGSIESPFSMEQEDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTS 325
Query: 2096 GPDGFTSLFFKVCWVVIGDDFVVAVQFFF 2010
GPDG++ FF+ W +IG + + A+ FF
Sbjct: 326 GPDGYSVEFFRDTWSIIGPEVLAAIHEFF 354
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 428 bits (1101), Expect(2) = e-161
Identities = 226/630 (35%), Positives = 350/630 (55%), Gaps = 4/630 (0%)
Frame = -1
Query: 2013 FFNKSKFMKEINSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLI 1834
FF+ + +K+ N+T + L+ K N + +FRPI+C N +YK I+K++ R++G+L ++I
Sbjct: 353 FFDSGQLLKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVI 412
Query: 1833 HPSQSAFVSGRSIQDNILLAHEIVRNYHREVGTPRCTLKIDLKKAYDTVNWQAILITLKK 1654
SQSAF+ GRS+ +N+LLA E+V Y+R +PR LK+DLKKA+D+V W+ + L+
Sbjct: 413 GHSQSAFLPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRA 472
Query: 1653 MGFPELFVNWIGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSIIF 1474
+ PE ++NWI CIT+P ++I +NG+ G+F +++GLRQG PLSPYLFV+ ME+ S +
Sbjct: 473 LAIPERYINWIHQCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLL 532
Query: 1473 QQQISQGKFGLHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLEMNI 1294
+ G HP+ ++HL FADDV++FF G S+ + + +F ++GL++N
Sbjct: 533 YSRYDSGYIHYHPKAGDLSISHLMFADDVMIFFDGGSSSMHGICETLDDFADWSGLKVNK 592
Query: 1293 HKTSLFSSVVDADTLMEITSILDCSVEKLPIRYLGMPLLSTRLSYNDCLPLISRILSRIN 1114
K+ LF + +D + ++ PIRYLG+PL+ +L D PL+ ++ +R+
Sbjct: 593 DKSQLFQAGLDLSERI-TSAAYGFPAGTFPIRYLGLPLMCRKLRIADYGPLLEKLSARLR 651
Query: 1113 AWKAKFVAYPGRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDMGKKYC 934
+W +K +++ GR LI +V+ G++ +WMS F+LPK IK+I S+ KFLWAG G+K
Sbjct: 652 SWVSKALSFAGRTQLISSVIFGLINFWMSTFLLPKGCIKKIESLCSKFLWAGSIDGRKSS 711
Query: 933 PVKWTSICLPVHEGGLGVRDIEVTNIAANLRHVWNLVSGKESIWTD*VNHNLLKGRNFWS 754
V W CLP EGGLG R N LR +W L S+W H+ L +FW
Sbjct: 712 KVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQ 771
Query: 753 VPIPQDASWSWRRILEQRNVAKDLIMTVLGDGEDTIMLNDLWHPKGRLVDWVDDNIIQTW 574
V Q W+W+ +L R +A+ I +G+G D W G L+ ++ D +
Sbjct: 772 VNALQTDPWTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPL 831
Query: 573 FPNGDSKVAEFIDQGQWCLTSCDDEAVLNVSNQVTSV--EFNLNERDKLIWTTSKNG--E 406
+KVA+ ID W L ++ + + S+ L D W
Sbjct: 832 RIPFSAKVADAIDGSGWRLPLSRSLTADSILSHLASLPPPSPLMVSDSYSWCVDDVDCQG 891
Query: 405 FSLKDTYLTLSSSNDSPFWCDLVWFKYHILRHSFISWLALQGRLKTRAKLMQWGLMSTAP 226
FS T+ L W VWFK + +H+F W A RL TR +L+ WGL+S+A
Sbjct: 892 FSAAKTWEVLRPRRPVKRWARSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAE 951
Query: 225 CPFCEDTVETESHLFHGCNFASQIWKGLLL 136
C C ET HL C+F+SQ+W+ + L
Sbjct: 952 CCLCSFDTETRDHLLLLCDFSSQVWRMVFL 981
Score = 169 bits (429), Expect(2) = e-161
Identities = 101/329 (30%), Positives = 160/329 (48%), Gaps = 1/329 (0%)
Frame = -2
Query: 2993 QDFSVCVQDAQLMDLPFSGCFYTWFNKQGATRIGSKLDRILVNIEWLDQFVNSKAEFLNP 2814
+DF C+ + +L DL F G +TW+NK I KLDRIL N W + + +S F N
Sbjct: 27 RDFGSCLSEMELSDLVFKGNSFTWWNKSSIRPIAKKLDRILANDSWCNLYPSSHGLFGNL 86
Query: 2813 GVSGHSPGVATIFDKRKHGPLPFRFFNFLAEEADFLDLVRSVW-TEKIRGNPMFVFTTKL 2637
S H + PF+FFNFL + DFL++V W + + G+ M+ + KL
Sbjct: 87 DFSDHVSCGVVLEANGISAKRPFKFFNFLLKNEDFLNVVMDNWFSTNVVGSSMYRVSKKL 146
Query: 2636 NKVKAAIIAWKKMRFKNLSEQVFEAKKELEEVQKQIQVNPLCPHLAQKEKVVVRHYSKVA 2457
+K I + ++ + + + EA + L Q NP + A E R + ++
Sbjct: 147 KAMKKPIKDFSRLNYSGIELRTKEAHELLITCQNLTLANPSVSNAAL-ELEAQRKWVLLS 205
Query: 2456 RYEESEKHQKSRVQWLKLGDSNTSFFHYSIKERRSRNNISTLKSQNNILLEDDKEIAEEC 2277
EES HQ+SRV W GDSNT +FH + R+S N I++L N +L++ + I + C
Sbjct: 206 CAEESFFHQRSRVSWFAEGDSNTHYFHRMVDSRKSFNTINSLVDSNGLLIDSQQGILDHC 265
Query: 2276 IDFFSKLYDEEGRKVTDGSGIESLKFDKIVDEASCVELTRPVSRDEIIEALSSIGSGKAP 2097
+ ++ +L + +L + C EL + + DEI A S+ K
Sbjct: 266 VTYYERLLGSIESPFSMEQEDMNLLLTYRCSQDQCSELEKSFTDDEIKAAFKSLPRNKTS 325
Query: 2096 GPDGFTSLFFKVCWVVIGDDFVVAVQFFF 2010
GPDG++ FF+ W +IG + + A+ FF
Sbjct: 326 GPDGYSVEFFRDTWSIIGPEVLAAIHEFF 354
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 347 bits (891), Expect(3) = e-158
Identities = 168/439 (38%), Positives = 265/439 (60%)
Frame = -1
Query: 2013 FFNKSKFMKEINSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLI 1834
FFN S+ + IN +TL+ K + + V +FRPIACC VIYK I+K++ RMKG++ ++
Sbjct: 484 FFNNSRMHRPINCIVVTLLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIGEVV 543
Query: 1833 HPSQSAFVSGRSIQDNILLAHEIVRNYHREVGTPRCTLKIDLKKAYDTVNWQAILITLKK 1654
+ +QS F+ GR I DNILLA E++R Y R+ +PRC +K+D++KAYD+V W + L +
Sbjct: 544 NEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETLLYE 603
Query: 1653 MGFPELFVNWIGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSIIF 1474
GFP FV WI C+++ YS+L+NG P F A +GLRQG P+SP+LF + ME +S
Sbjct: 604 FGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQGDPMSPFLFALCMEYLSRCL 663
Query: 1473 QQQISQGKFGLHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLEMNI 1294
++ F HP+C+ +THL FADD+L+F + S+ + +F+ +GL +
Sbjct: 664 EELKGSPDFNFHPKCERLNITHLMFADDLLMFCRADKSSLDHMNVAFQKFSHASGLAASH 723
Query: 1293 HKTSLFSSVVDADTLMEITSILDCSVEKLPIRYLGMPLLSTRLSYNDCLPLISRILSRIN 1114
K++++ VD +T E+ + + +LP RYLG+PL S +L+Y C PL+ I +R
Sbjct: 724 EKSNIYFCGVDDETARELADYVHMQLGELPFRYLGVPLTSKKLTYAQCKPLVEMITNRAQ 783
Query: 1113 AWKAKFVAYPGRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDMGKKYC 934
W AK ++Y GRL LIK++L+ M YW F L K+VI+ + + +KFLW G K
Sbjct: 784 TWMAKLLSYAGRLQLIKSILSSMQNYWAHIFPLSKKVIQAVEKVCRKFLWTGKTEETKKA 843
Query: 933 PVKWTSICLPVHEGGLGVRDIEVTNIAANLRHVWNLVSGKESIWTD*VNHNLLKGRNFWS 754
PV W +I P GG V +++ N AA L+ +W + ++ +W ++ +K ++ +
Sbjct: 844 PVAWATIQRPKSRGGWNVINMKYWNRAAMLKLLWAIEFKRDKLWVRWIHSYYIKRQDILT 903
Query: 753 VPIPQDASWSWRRILEQRN 697
V I +W R+I++ R+
Sbjct: 904 VNISNQTTWILRKIVKARD 922
Score = 172 bits (435), Expect(3) = e-158
Identities = 101/345 (29%), Positives = 174/345 (50%), Gaps = 3/345 (0%)
Frame = -2
Query: 3035 SDKVGGAEVRPSHYQDFSVCVQDAQLMDLPFSGCFYTWFNKQ-GATRIGSKLDRILVNIE 2859
+D++ G V + +DF + + L++ + +Y+W N G R+ S++D+ VN+
Sbjct: 145 NDRLYGTLVTDAETEDFQQFLLQSNLIESRSTWSYYSWSNSSIGRDRVLSRIDKAYVNLV 204
Query: 2858 WLDQFVNSKAEFLNPGVSGHSPGVATIFDKRKHGPLPFRFFNFLAEEADFLDLVRSVWTE 2679
WL + ++L PG+S HSP + + R G PF+F N +AE+ +FL+ V W
Sbjct: 205 WLGMYAEVSVQYLPPGISDHSPLLFNLMTGRPQGGKPFKFMNVMAEQGEFLETVEKAWNS 264
Query: 2678 KIRGNPMFVFTTKLNKVKAAIIAWKKMRFKNLSEQVFEAKKELEEVQKQ--IQVNPLCPH 2505
+ L VK + K + E+V + +L+++Q Q N +
Sbjct: 265 VNGRFKLQAIWLNLKAVKRELKQMKTQKIGLAHEKVKNLRHQLQDLQSQDDFDHNDIMQT 324
Query: 2504 LAQKEKVVVRHYSKVARYEESEKHQKSRVQWLKLGDSNTSFFHYSIKERRSRNNISTLKS 2325
A+ +RH+S + E+S QKSR+ WL+ GD+N+ F ++K R + N I L +
Sbjct: 325 DAKSIMNDLRHWSHI---EDSILQQKSRITWLQQGDTNSKLFFTAVKARHAINRIDMLNT 381
Query: 2324 QNNILLEDDKEIAEECIDFFSKLYDEEGRKVTDGSGIESLKFDKIVDEASCVELTRPVSR 2145
++ +++D E+ EE ++F+ KL + G + +++ K + + L R V+
Sbjct: 382 EDGRVIQDADEVQEEILEFYKKLLGTRASTLM-GVDLNTVRGGKCLSAQAKESLIREVAS 440
Query: 2144 DEIIEALSSIGSGKAPGPDGFTSLFFKVCWVVIGDDFVVAVQFFF 2010
EI EAL+ IG+ KAPG DGF + FFK W I + +Q FF
Sbjct: 441 TEIDEALAGIGNDKAPGLDGFNAYFFKKSWGSIKQEIYAGIQEFF 485
Score = 91.7 bits (226), Expect(3) = e-158
Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 1/138 (0%)
Frame = -1
Query: 3459 WNIRGSNDPLKQVEVSSLIRSSEFSIIGLVETHVQSINASRIRNKIMPKWHFIDNYNNDD 3280
WN+RG NDP K E+ + + S + + L+ET V+ NAS+++ K+ W +++NY++
Sbjct: 6 WNVRGMNDPFKIKEIKNFLYSHKIVVCALLETRVREQNASKVQGKLGKDWKWLNNYSHSA 65
Query: 3279 SGRIWIGWNLDSVKVSLIHSSSQVIFVEV-DTVENISFVAAFVYENNDGVLRRALWTDIT 3103
RIWIGW V V+L H+ Q++ ++ D + VA VY + R++LW+ +
Sbjct: 66 RERIWIGWRPAWVNVTLTHTQEQLMVCDIQDQSHKLKMVA--VYGLHTIADRKSLWSGLL 123
Query: 3102 AFSQINSKPWIVLGDFNS 3049
Q P I++GDFN+
Sbjct: 124 QCVQ-QQDPMIIIGDFNA 140
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 414 bits (1063), Expect(2) = e-157
Identities = 216/623 (34%), Positives = 347/623 (55%), Gaps = 5/623 (0%)
Frame = -1
Query: 2013 FFNKSKFMKEINSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLI 1834
FF K +K+ N+T + L+ K N S + DFRPI+C N +YK I+K++ R+K L + I
Sbjct: 390 FFTSGKLLKQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAI 449
Query: 1833 HPSQSAFVSGRSIQDNILLAHEIVRNYHREVGTPRCTLKIDLKKAYDTVNWQAILITLKK 1654
SQSAF+ GR +N+LLA E+V Y+++ P LK+DL+KA+D+V W I+ L+
Sbjct: 450 SHSQSAFMPGRLFLENVLLATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRA 509
Query: 1653 MGFPELFVNWIGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSIIF 1474
+ PE F WI C+++ +S+++NG G+F +S+GLRQG P+SPYLFV+ ME+ S +
Sbjct: 510 LNVPEKFTCWILECLSTASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLL 569
Query: 1473 QQQISQGKFGLHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLEMNI 1294
Q + + G HP+ +++HL FADDV++FF G S+ + + +F ++GL MN
Sbjct: 570 QSRYTSGYIAYHPKTSQLEISHLMFADDVMIFFDGKSSSLHGIVESLEDFAGWSGLLMNT 629
Query: 1293 HKTSLFSSVVDADTLMEITSILDCSVEKLPIRYLGMPLLSTRLSYNDCLPLISRILSRIN 1114
+KT L+ + + + S + LP+RYLG+PL+S +L+ + PLI +I +R N
Sbjct: 630 NKTQLYHAGLSQSESDSMAS-YGFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFN 688
Query: 1113 AWKAKFVAYPGRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDMGKKYC 934
+W + +++ GR+ L+ +V++G+V +W+S FILP IK+I S+ +FLW+ K
Sbjct: 689 SWVVRLLSFAGRVQLLASVISGIVNFWISSFILPLGCIKKIESLCSRFLWSSRIDKKGIA 748
Query: 933 PVKWTSICLPVHEGGLGVRDIEVTNIAANLRHVWNLVSGKESIWTD-*VNHNLLKGRNFW 757
V W+ +CLP EGG+G+R V+N LR +W L S S+W H+L K +FW
Sbjct: 749 KVAWSQVCLPKAEGGIGLRRFAVSNRTLYLRMIWLLFSNSGSLWVAWHKQHSLGKSTSFW 808
Query: 756 SVPIPQDASWSWRRILEQRNVAKDLIMTVLGDGEDTIMLNDLWHPKGRLVDWVDDNIIQT 577
+ P SW+W+ +L R VA+ I +G+G D D W P G L+ ++ + +
Sbjct: 809 NQPEKPHDSWNWKCLLRLRVVAERFIRCNVGNGRDASFWFDNWTPFGPLIKFLGNEGPRD 868
Query: 576 WFPNGDSKVAEFIDQGQWCLTSCDDEAVLNVSNQVTSVEF--NLNERDKLIWTTSKN--G 409
+ ++K+++ W + + L++ +T++ + + D W
Sbjct: 869 LRVHLNAKISDVCTSEGWSIADPRSDQALSLHTHLTNISMPSDAQDLDSYDWVVDNKVCQ 928
Query: 408 EFSLKDTYLTLSSSNDSPFWCDLVWFKYHILRHSFISWLALQGRLKTRAKLMQWGLMSTA 229
FS T+ L S+ W VWFK +H+F W A RL T+ +L WG+
Sbjct: 929 GFSAAATWSALRPSSAPVPWARAVWFKGATPKHAFHLWTAHLDRLPTKVRLASWGMQIDT 988
Query: 228 PCPFCEDTVETESHLFHGCNFAS 160
C C ET HLF C+FA+
Sbjct: 989 TCGLCSLHPETRDHLFLSCDFAN 1011
Score = 172 bits (437), Expect(2) = e-157
Identities = 117/358 (32%), Positives = 175/358 (48%), Gaps = 2/358 (0%)
Frame = -2
Query: 3077 LGLFLEILTPILKPSDKVGGAEVRPSHYQDFSVCVQDAQLMDLPFSGCFYTWFNKQGATR 2898
LG F +IL P + S G RP+ F + A L DL F G +TW+NK+
Sbjct: 39 LGDFNQILHPS-EHSTSDGFNVDRPTRI--FRETILLASLTDLSFRGNTFTWWNKRSRAP 95
Query: 2897 IGSKLDRILVNIEWLDQFVNSKAEFLNPGVSGHSPGVATIFDKRKHGPLPFRFFNFLAEE 2718
+ KLDRILVN +W F +S F P S HS ++ PFRF NFL ++
Sbjct: 96 VAKKLDRILVNDKWTTTFPSSLGLFGEPDFSDHSSCELSLMSASPRSKKPFRFNNFLLKD 155
Query: 2717 ADFLDLVRSVW-TEKIRGNPMFVFTTKLNKVKAAIIAWKKMRFKNLSEQVFEAKKELEEV 2541
+FL L+ W + + G+ M+ + KL +K I + + + ++ ++ EA L
Sbjct: 156 ENFLSLICLKWFSTSVTGSAMYRVSVKLKALKKVIRDFSRDNYSDIEKRTKEAHDALLLA 215
Query: 2540 QKQIQVNPLCPHLAQKEKVVVRHYSKVARYEESEKHQKSRVQWLKLGDSNTSFFHYSIKE 2361
Q + +P CP A E R + +A E S +Q+SRV WL+ GD N+S+FH
Sbjct: 216 QSVLLASP-CPSNAAIEAETQRKWRILAEAEASFFYQRSRVNWLREGDMNSSYFHKMASA 274
Query: 2360 RRSRNNISTLKSQNNILLEDDKEIAEECIDFF-SKLYDEEGRKVTDGSGIESLKFDKIVD 2184
R+S N+I L +E + + C+++F S L E+G + + + I +L
Sbjct: 275 RQSLNHIHFLSDPVGDRIEGQQNLENHCVEYFQSNLGSEQGLPLFEQADISNL-LSYRCS 333
Query: 2183 EASCVELTRPVSRDEIIEALSSIGSGKAPGPDGFTSLFFKVCWVVIGDDFVVAVQFFF 2010
A V L P S ++I A S+ KA GPDGF+ FF CW +IG + A+ FF
Sbjct: 334 PAQQVSLDTPFSSEQIKNAFFSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEFF 391
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 436 bits (1121), Expect(2) = e-149
Identities = 225/629 (35%), Positives = 355/629 (56%), Gaps = 5/629 (0%)
Frame = -1
Query: 2013 FFNKSKFMKEINSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLI 1834
FF K K +N+T + L+ KKD E+ D+RPI+CCNV+YK I+KI+A R+K +L S I
Sbjct: 796 FFVKGFLPKGLNATILALIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFI 855
Query: 1833 HPSQSAFVSGRSIQDNILLAHEIVRNYHREVGTPRCTLKIDLKKAYDTVNWQAILITLKK 1654
+QSAFV R + +N+LLA E+V++YH+E TPRC +KID+ KA+D+V WQ +L TL+
Sbjct: 856 LQNQSAFVKERLLMENVLLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEA 915
Query: 1653 MGFPELFVNWIGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSIIF 1474
+ FPE F +WI LCI++ +S+ +NG G+FG+SRGLRQGC LSPYLFV+ M ++S +
Sbjct: 916 LNFPETFRHWIKLCISTATFSVQVNGELAGFFGSSRGLRQGCALSPYLFVICMNVLSHMI 975
Query: 1473 QQQISQGKFGLHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLEMNI 1294
+ G HP+C+ LTHLCFADD++VF G + + N EF +GL++++
Sbjct: 976 DEAAVHRNIGYHPKCEKIGLTHLCFADDLMVFVDGHQWSIEGVINVFKEFAGRSGLQISL 1035
Query: 1293 HKTSLFSSVVDADTLMEITSILDCSVEKLPIRYLGMPLLSTRLSYNDCLPLISRILSRIN 1114
K++++ + V A ++ S + +LP+RYLG+PLL+ +++ D PLI + ++I+
Sbjct: 1036 EKSTIYLAGVSASDRVQTLSSFPFANGQLPVRYLGLPLLTKQMTTADYSPLIEAVKTKIS 1095
Query: 1113 AWKAKFVAYPGRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDMGKKYC 934
+W A+ ++Y GRL L+ +V+ + +WMS + LP I+EI + FLW+G + K
Sbjct: 1096 SWTARSLSYAGRLALLNSVIVSIANFWMSAYRLPAGCIREIEKLCSAFLWSGPVLNPKKA 1155
Query: 933 PVKWTSICLPVHEGGLGVRDIEVTNIAANLRHVWNLVSGKESIWTD*VNHNLLKGRNFWS 754
+ W+SIC P EGGLG++ + N + L+ +W L+S + S+W + +++ FWS
Sbjct: 1156 KIAWSSICQPKKEGGLGIKSLAEANKVSCLKLIWRLLSTQPSLWVTWIWTFIIRKGTFWS 1215
Query: 753 VPIPQD-ASWSWRRILEQRNVAKDLIMTVLGDGEDTIMLNDLWHPKGRLVDWVDD-NIIQ 580
SW W+++L+ R +AK + + +G T D W GRL+D +I
Sbjct: 1216 ANERSSLGSWMWKKLLKYRELAKSMHKVEVRNGSSTSFWYDHWSHLGRLLDITGTRRVID 1275
Query: 579 TWFPNGDSKVAEFIDQGQWCLTSCDDEAVLNVSNQVTSVEFNLNERDKLIWTTSKNG--- 409
P ++ + + Q +N Q + D +W + KN
Sbjct: 1276 LGIPL-ETNLETVLRTHQHRQHRAAIYNRINAEIQRLQQQEREAGPDISLWRSLKNDFNK 1334
Query: 408 EFSLKDTYLTLSSSNDSPFWCDLVWFKYHILRHSFISWLALQGRLKTRAKLMQWGLMSTA 229
F K T+ + + W VWF Y ++SF+ WL +Q RL T ++ W
Sbjct: 1335 RFITKVTWNNVRTHQPQQNWYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLV 1394
Query: 228 PCPFCEDTVETESHLFHGCNFASQIWKGL 142
C C + ET HLF C + S +W+ L
Sbjct: 1395 TCTLCNNAEETRDHLFFSCQYTSYVWEAL 1423
Score = 123 bits (309), Expect(2) = e-149
Identities = 80/259 (30%), Positives = 132/259 (50%), Gaps = 8/259 (3%)
Frame = -2
Query: 2759 GPLPFRFFNFLAEEADFLDLVRSVWTEK----IRGNPMFVFTTKLNKVKAAIIAWKKMRF 2592
G PF+F N L + FL +V S W + + ++ F+ KL +K + K +
Sbjct: 544 GRKPFKFVNVLTKLPQFLPVVESHWASSAPLYVSTSALYRFSKKLKTLKPHLRELGKEKL 603
Query: 2591 KNLSEQVFEAKKELEEVQKQIQVNPLCPHLAQKEKVVVRHYSKVARYEESEKHQKSRVQW 2412
+L ++ EA L E Q NP +A++ K ++ ++ EE QKS++ W
Sbjct: 604 GDLPKRTREAHILLCEKQATTLANPSQETIAEELKAYT-DWTHLSELEEGFLKQKSKLHW 662
Query: 2411 LKLGDSNTSFFHYSIKERRSRNNISTLKSQNNILLEDDKEIAEECIDFFSKLYDEEGRKV 2232
+ +GD N S+FH + + R+ RN+I ++ N L+ +EI E FF++ + R+
Sbjct: 663 MNVGDGNNSYFHKAAQVRKMRNSIREIRGPNAETLQTSEEIKGEAERFFNEFLN---RQS 719
Query: 2231 TDGSGIESLKFDKIVDEASCVE----LTRPVSRDEIIEALSSIGSGKAPGPDGFTSLFFK 2064
D GI ++ V LTR V+ +EI + L ++ + K+PGPDG+TS FFK
Sbjct: 720 GDFHGISVEDLRNLMSYRCSVTDQNILTREVTGEEIQKVLFAMPNNKSPGPDGYTSEFFK 779
Query: 2063 VCWVVIGDDFVVAVQFFFL 2007
W + G DF+ A+Q FF+
Sbjct: 780 ATWSLTGPDFIAAIQSFFV 798
Score = 84.7 bits (208), Expect = 4e-13
Identities = 58/220 (26%), Positives = 91/220 (41%), Gaps = 4/220 (1%)
Frame = -2
Query: 4628 SIINGRKAVSSSYADYAEDIKQCEDLVIGVFVGQRPAFMLVKNVVSRLWKLKNDFSMTIH 4449
+++NG V + + +DL+IG F P V +V+++W L D ++ I
Sbjct: 43 TMVNGDSIVQVPNEIFEDSTPLWDDLLIGRFPQISPHIAKVHVIVNKIWPL-GDKTVKID 101
Query: 4448 GXXXXXXXXXXXED----RIAVLEHGSIYISSQLFIIRPWHKDLEKEMEELKTVPVWLNL 4281
R VL G I+ I+ W E E+KT+P+W+ +
Sbjct: 102 AYVVDTKTIKFRIRESSVRARVLRRGMWNIADMPMIVSKWSPVAEDAQPEIKTMPMWITI 161
Query: 4280 RKVPLYMWNETGLGNIASCVGTPIMLDKQTLNKTRMSYARVCVEVDANCDFPSSIPVYMD 4101
+ VP M+ GL +AS +G P L T+ A+V VE D + P +
Sbjct: 162 KNVPRSMFTWKGLSFLASPIGEPKKLHPDTVLCNSFEEAKVFVEADLTQEMPKQFRFKSE 221
Query: 4100 GELALEVVVEYPWKPPMCALCKTFNHSALKCKTTAAKAQL 3981
+ V +YPW PP C+ C + H C T + QL
Sbjct: 222 TGVDAMVEYKYPWLPPRCSSCSKWGHIQEVCLTRPSPNQL 261
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 306 bits (783), Expect(3) = e-145
Identities = 151/418 (36%), Positives = 236/418 (56%)
Frame = -1
Query: 2013 FFNKSKFMKEINSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLI 1834
FF + N+T ITL+ K + FRP+ACC IYK IT+II+ R+K + +
Sbjct: 493 FFISGNLPRGFNATAITLIPKVTGADRLTQFRPVACCTTIYKVITRIISRRLKLFIDQAV 552
Query: 1833 HPSQSAFVSGRSIQDNILLAHEIVRNYHREVGTPRCTLKIDLKKAYDTVNWQAILITLKK 1654
+Q F+ GR + +N+LLA E+V N+ + T R L++D+ KAYD VNW+ ++ LK
Sbjct: 553 QANQVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDISKAYDNVNWEFLINILKA 612
Query: 1653 MGFPELFVNWIGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSIIF 1474
+ P +F++WI +CI+S YSI NG G+F +G+RQG P+S +LFV+VM+++S
Sbjct: 613 LDLPLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQGDPMSSHLFVLVMDVLSKSL 672
Query: 1473 QQQISQGKFGLHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLEMNI 1294
G F LHP C +THL FADDVLVF G+ S+ + + +F +GL +N
Sbjct: 673 DLGALNGLFNLHPNCLAPIITHLSFADDVLVFSDGAASSIAGILTILDDFRQGSGLGINR 732
Query: 1293 HKTSLFSSVVDADTLMEITSILDCSVEKLPIRYLGMPLLSTRLSYNDCLPLISRILSRIN 1114
KT L + + L + LP+RYLG+PL+S ++ D PL+ RI SR
Sbjct: 733 EKTELLLDGGNFARNRSLADNLGITHGSLPVRYLGVPLMSQKMRRQDYQPLVDRINSRFT 792
Query: 1113 AWKAKFVAYPGRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDMGKKYC 934
+W A+ +++ GRL L+K+V+ + +W S FI P + ++++ + FLW+G +
Sbjct: 793 SWTARHLSFAGRLQLLKSVIYSTINFWASVFIFPNQCLQKLEQMCNAFLWSGAPNSARGA 852
Query: 933 PVKWTSICLPVHEGGLGVRDIEVTNIAANLRHVWNLVSGKESIWTD*VNHNLLKGRNF 760
+ W +C P GGLG++ + N L+ +W L + S+W V +L+ RNF
Sbjct: 853 KISWNIVCSPKEAGGLGLKRLSSWNRILALKLIWLLFTSAGSLWVSWVRLHLIGRRNF 910
Score = 168 bits (426), Expect(3) = e-145
Identities = 105/332 (31%), Positives = 166/332 (50%), Gaps = 3/332 (0%)
Frame = -2
Query: 2993 QDFSVCVQDAQLMDLPFSGCFYTWFNKQGATRIGSKLDRILVNIEWLDQFVNSKAEFLNP 2814
+D C++D+QL DLP G F+TW N Q I KLDR L N EW F ++ A F P
Sbjct: 166 EDLQCCLRDSQLSDLPSRGVFFTWSNHQQDNPILRKLDRALANGEWFAVFPSALAVFDPP 225
Query: 2813 GVSGHSPGVATIFDKRKHGPLPFRFFNFLAEEADFLDLVRSVW-TEKIRGNPMFVFTTKL 2637
G S H+P + I ++ F++F+FL+ +L + + W + G+ MF L
Sbjct: 226 GDSDHAPCIILIDNQPPPSKKSFKYFSFLSSHPSYLAALSTAWEANTLVGSHMFSLRQHL 285
Query: 2636 NKVKAAIIAWKKMRFKNLSEQVFEAKKELEEVQKQIQVNPLCPHLAQKEKVVVRHYSKVA 2457
K ++RF N+ ++ ++ LE++Q ++ +P L ++E V + + A
Sbjct: 286 KVAKLCCRTLNRLRFSNIQQRTAQSLTRLEDIQVELLTSP-SDTLFRREHVARKQWIFFA 344
Query: 2456 RYEESEKHQKSRVQWLKLGDSNTSFFHYSIKERRSRNNISTLKSQNNILLEDDKEIAEEC 2277
ES QKSR++WL GD+NT FFH ++ ++ N I L+ + +E+ +I
Sbjct: 345 AALESFFRQKSRIRWLHEGDANTRFFHRAVIAHQATNLIKFLRGDDGFRVENVDQIKGML 404
Query: 2276 IDFFSKLYDEEGRKVTDGSGIESLK--FDKIVDEASCVELTRPVSRDEIIEALSSIGSGK 2103
I ++S L VT S +E +K D +LT S +EI + L S+ K
Sbjct: 405 IAYYSHLLGIPSENVTPFS-VEKIKGLLPFRCDSFLASQLTTIPSEEEITQVLFSMPRNK 463
Query: 2102 APGPDGFTSLFFKVCWVVIGDDFVVAVQFFFL 2007
APGPDGF FF W ++ V A++ FF+
Sbjct: 464 APGPDGFPVEFFIEAWAIVKSSVVAAIREFFI 495
Score = 94.7 bits (234), Expect(3) = e-145
Identities = 54/149 (36%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
Frame = -1
Query: 3471 KIAIWNIRGSNDPLKQVEVSSLIRSSEFSIIGLVETHVQSINASRIRNKIMPKWHFIDNY 3292
K+ WNIRG N +Q V S I S+ + +ETHV NA+ + +P W NY
Sbjct: 2 KVFCWNIRGLNSRNRQRVVRSWIASNNLLVGCFLETHVAQENANSVLASTLPGWRMDSNY 61
Query: 3291 NNDDSGRIWIGWNLDSVKVSLIHSSSQVIFVEVDTVENI-SFVAAFVYENNDGVLRRALW 3115
+ GRIWI W+ S+ V + + Q++F + + SF AFVY N + RR+LW
Sbjct: 62 CCSELGRIWIVWD-PSISVLVFKRTDQIMFCSIKIPSLLQSFAVAFVYGRNSELDRRSLW 120
Query: 3114 TDITAFSQ---INSKPWIVLGDFNSYIEA 3037
DI S+ ++ PW++LGDFN A
Sbjct: 121 EDILVLSRTSPLSVTPWLLLGDFNQIAAA 149
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 441 bits (1134), Expect(2) = e-142
Identities = 216/502 (43%), Positives = 313/502 (62%), Gaps = 1/502 (0%)
Frame = -1
Query: 2013 FFNKSKFMKEINSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLI 1834
FF+ + E+NST ITLV K NP+ + DFRPI+CCN YK I K++A R+KG L ++
Sbjct: 320 FFSYGSLLMELNSTIITLVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLKGTLHLIV 379
Query: 1833 HPSQSAFVSGRSIQDNILLAHEIVRNYHREVGTPRCTLKIDLKKAYDTVNWQAILITLKK 1654
PSQS F+ GR I DNILLA EI+ +YH+ G PRCT +D+ KA DTV W I+ TL+
Sbjct: 380 GPSQSTFIPGRRIGDNILLAQEIICDYHKADGQPRCTFMVDMMKANDTVEWDFIIATLQA 439
Query: 1653 MGFPELFVNWIGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSIIF 1474
P + WI CI+S K+S+ +NG G+F RGLRQG PLSPYLFV+ ME++S+
Sbjct: 440 FNIPSTLIGWIKSCISSAKFSVCVNGELAGFFARRRGLRQGDPLSPYLFVIAMEVLSLCI 499
Query: 1473 QQQISQGK-FGLHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLEMN 1297
Q++I+ F H RC L+HLCFADD+L+F G ++ TL + + F + + L+ N
Sbjct: 500 QRRINCSPCFRYHWRCDQLNLSHLCFADDLLMFCNGDENSVRTLHDAFSNFESLSSLKAN 559
Query: 1296 IHKTSLFSSVVDADTLMEITSILDCSVEKLPIRYLGMPLLSTRLSYNDCLPLISRILSRI 1117
+ ++ +F + VD ++ + + + S+ P+RYLG+PL++++L DC PL+ RI +RI
Sbjct: 560 VSESKIFLAGVDGNSSDSVLQVTNFSLGTCPVRYLGIPLITSKLRMQDCSPLLDRIETRI 619
Query: 1116 NAWKAKFVAYPGRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDMGKKY 937
+W+ K +++ GRL LI++VL+ + YW S ILPK+V+K+I + FLWAG G+
Sbjct: 620 KSWENKVLSFAGRLQLIQSVLSSIQVYWASHLILPKKVLKDIEKRLRCFLWAGNCSGRAA 679
Query: 936 CPVKWTSICLPVHEGGLGVRDIEVTNIAANLRHVWNLVSGKESIWTD*VNHNLLKGRNFW 757
V W+ ICLP EGGLG++D+ N A + H+WNLVS + WTD V LLKG +FW
Sbjct: 680 TKVAWSEICLPKCEGGLGIKDLHCWNKALMISHIWNLVSSSSNFWTDWVKVYLLKGNSFW 739
Query: 756 SVPIPQDASWSWRRILEQRNVAKDLIMTVLGDGEDTIMLNDLWHPKGRLVDWVDDNIIQT 577
+ P+P SW+WR++L+ R + + ++GDG T + D WHP G L NII
Sbjct: 740 NAPLPSICSWNWRKLLKIRELCCSFFVNIIGDGRATSLWFDNWHPLGPLTLRWSSNIIG- 798
Query: 576 WFPNGDSKVAEFIDQGQWCLTS 511
+G SK A G + +S
Sbjct: 799 --ESGLSKSAMLTPNGFYSTSS 818
Score = 94.0 bits (232), Expect(2) = e-142
Identities = 80/283 (28%), Positives = 115/283 (40%), Gaps = 1/283 (0%)
Frame = -2
Query: 2855 LDQFVNSKAEFLNPGVSGHSPGVATIFDKRKHGPLPFRFFNFLAEEADFLDLVRSVWTEK 2676
LD S FL PG+S H+ V + + PF+FFNFLA+ DF+ +V +VW
Sbjct: 131 LDDLNYSVLSFLPPGISDHAAMVVKVGLPFRIRKAPFKFFNFLADREDFIPIVSAVWATN 190
Query: 2675 IRGNPMFVFTTKLNKVKAAIIAWKKMRFKNLSEQVFEAKKELEEVQKQIQVNPLCPHLAQ 2496
+ G+ F KL VK +FK L+ V V+K ++
Sbjct: 191 VWGSKQFQVWRKLKLVKN--------QFKLLNCNV---------VEKLLK---------- 223
Query: 2495 KEKVVVRHYSKVARYEESEKHQKSRVQWLKLGDSNTSFFHYSIKERRSRNNISTLKSQNN 2316
+KSRVQWLK GD N++FF ++ + R+RN I+T+
Sbjct: 224 ---------------------KKSRVQWLKKGDKNSTFFFKTMTKHRNRNRIATINRS-- 260
Query: 2315 ILLEDDKEIAEECIDFFSKLYDEEGRKVTDGSGIESLKFDKIVDEASCVELTRPVSRDEI 2136
D ++A+ C E T D+I
Sbjct: 261 ----DGPDLAKSL----------------------------------CNEFTH----DDI 278
Query: 2135 IEALSSIGSGKAPGPDGFTSLFFKVCWVVIGDDFV-VAVQFFF 2010
S+ K+PGPDGF FF+ W+VIGD+ V AV+ FF
Sbjct: 279 RAVFFSMNPNKSPGPDGFNGCFFQKAWLVIGDNVVAAAVKEFF 321
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 452 bits (1162), Expect(2) = e-140
Identities = 231/634 (36%), Positives = 362/634 (57%), Gaps = 7/634 (1%)
Frame = -1
Query: 2013 FFNKSKFMKEINSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLI 1834
FF K K +NST + L+ KK E+ D+RPI+CCNV+YK I+KI+A R+K +L I
Sbjct: 220 FFAKGFLPKGVNSTILALIPKKKEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFI 279
Query: 1833 HPSQSAFVSGRSIQDNILLAHEIVRNYHREVGTPRCTLKIDLKKAYDTVNWQAILITLKK 1654
+QSAFV R + +N+LLA E+V++YH++ + RC +KID+ KA+D++ W + L
Sbjct: 280 VGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVLAA 339
Query: 1653 MGFPELFVNWIGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSIIF 1474
M FP F++WI LC+++ +SI +NG GYF ++RGLRQGC LSPYLFV+ M+++S +
Sbjct: 340 MNFPGEFIHWISLCMSTASFSIQVNGELAGYFRSARGLRQGCSLSPYLFVISMDVLSRML 399
Query: 1473 QQQISQGKFGLHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLEMNI 1294
+ +FG HPRCK LTHLCFADD+++ G + + + +F A GL++ +
Sbjct: 400 DKAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDGIVKVLNQFAAKLGLKICM 459
Query: 1293 HKTSLFSSVVDADTLMEITSILDCSVEKLPIRYLGMPLLSTRLSYNDCLPLISRILSRIN 1114
KT+L+ + V + ++S V KLP+RYLG+PL++ RL+ +D PLI +I RI
Sbjct: 460 EKTTLYLAGVSDHSRQLMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIG 519
Query: 1113 AWKAKFVAYPGRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDMGKKYC 934
W ++++++ GRL LI +VL + +WM+ F LP+ I EI I LW+G ++ K
Sbjct: 520 MWTSRYLSFAGRLSLINSVLWSITNFWMNAFRLPRECINEINRISSALLWSGPELNPKKA 579
Query: 933 PVKWTSICLPVHEGGLGVRDIEVTNIAANLRHVWNLVSGKESIWTD*VNHNLLKGRNFWS 754
V W IC P EGGLG++ + N ++L+ +W L+S ++S+W NLLK +FWS
Sbjct: 580 KVSWDEICKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWS 639
Query: 753 VPIPQD-ASWSWRRILEQRNVAKDLIMTVLGDGEDTIMLNDLWHPKGRLVDWVDDNIIQT 577
+ SW WRR+L+ R VAK + +G +T D W KG L++ +
Sbjct: 640 IGTHSTLGSWIWRRLLKHREVAKSFCKIEVNNGVNTSFWFDNWSEKGPLINLTG---ARG 696
Query: 576 WFPNGDSKVAEFIDQGQWCLTSCDDEAVLNVSNQVTSVEF---NLNERDKLIWTTSKN-- 412
G S+ + +LN ++ ++ N+ D ++W ++
Sbjct: 697 AIDMGISRHMTLAEAWSRRRRKRHRVEILNEFEEILLQKYQHRNIELEDAILWRGKEDVF 756
Query: 411 -GEFSLKDTYLTLSSSNDSPFWCDLVWFKYHILRHSFISWLALQGRLKTRAKLMQWGLMS 235
FS KDT+ + +S++ W VWF + + SF +WLA++ RL T ++M W +
Sbjct: 757 KARFSTKDTWNHIRTSSNQRAWHKGVWFAHATPKFSFCAWLAIRNRLSTGDRMMTWNNGT 816
Query: 234 TAPCPFCEDTVETESHLFHGCNFASQIWKGLLLN 133
C FC +ET HLF C ++S+IW + N
Sbjct: 817 PTTCVFCSSPMETRDHLFFQCCYSSEIWTSIAKN 850
Score = 77.4 bits (189), Expect(2) = e-140
Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 5/137 (3%)
Frame = -2
Query: 2405 LGDSNTSFFHYSIKERRSRNNISTLKSQNNILLEDDKEIAEECIDFFSKLY-----DEEG 2241
+GD N FH +I R + N+I + +++ +++ ++I E +++F D EG
Sbjct: 89 VGDRNNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDFLQTIPADYEG 148
Query: 2240 RKVTDGSGIESLKFDKIVDEASCVELTRPVSRDEIIEALSSIGSGKAPGPDGFTSLFFKV 2061
V + + L F D+ LTR V+ +EI + + S+ K+PGPDG+TS F+K
Sbjct: 149 MCVEELENL--LPFRCSEDDHRL--LTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKA 204
Query: 2060 CWVVIGDDFVVAVQFFF 2010
W +IGD+ ++A+Q FF
Sbjct: 205 SWEIIGDEVIIAIQSFF 221
>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
Length = 762
Score = 449 bits (1155), Expect(2) = e-135
Identities = 228/619 (36%), Positives = 361/619 (58%), Gaps = 8/619 (1%)
Frame = -1
Query: 2013 FFNKSKFMKEINSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLI 1834
FF K +NST + L+ KK E+ D+RPI+CCNV+YK I+KI+A R+K +L I
Sbjct: 52 FFALGFLPKGVNSTILALIPKKLESKEMKDYRPISCCNVMYKVISKILANRLKLLLPQFI 111
Query: 1833 HPSQSAFVSGRSIQDNILLAHEIVRNYHREVGTPRCTLKIDLKKAYDTVNWQAILITLKK 1654
+QS+FV R + +N+LLA ++V++YH++ + RC +KID+ KA D+V W ++ TL
Sbjct: 112 AGNQSSFVKDRLLIENVLLATDLVKDYHKDSISERCAIKIDISKASDSVQWSFLINTLTA 171
Query: 1653 MGFPELFVNWIGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSIIF 1474
M FPE+F++WI LCIT+P +S+ +NG G+F +SRGLRQGC LSPYLFV+ M+++S +
Sbjct: 172 MHFPEMFIHWIRLCITTPSFSVQVNGELAGFFQSSRGLRQGCALSPYLFVICMDVLSKLL 231
Query: 1473 QQQISQGKFGLHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLEMNI 1294
+ + G+ G HP CK LTHL FADD+++ G C + + F+ ++GL++++
Sbjct: 232 DKVVGIGRIGYHPHCKRMGLTHLSFADDLMILTDGQCRSIEGIIEVFDLFSKWSGLKISM 291
Query: 1293 HKTSLFSSVVDADTLMEITSILDCSVEKLPIRYLGMPLLSTRLSYNDCLPLISRILSRIN 1114
K+++FS+ + + + ++ + V +LPIRYLG+PL++ RLS D PLI +I RI
Sbjct: 292 EKSTIFSAGLSSTSRAQLHTHFPFEVGELPIRYLGLPLVTKRLSSVDYAPLIEQIRKRIG 351
Query: 1113 AWKAKFVAYPGRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDMGKKYC 934
+W ++F+++ GR LI +++ +W+S F LP+ I+EI + FLW+G ++ K
Sbjct: 352 SWSSRFLSFAGRFNLISSIIWSSCNFWLSAFQLPRACIQEIEKLCSSFLWSGTNLNSKKA 411
Query: 933 PVKWTSICLPVHEGGLGVRDIEVTNIAANLRHVWNLVSGKESIWTD*VNHNLLKGRNFWS 754
+ W +C P EGGLG+R ++ N L+ VW ++S +S+W V HNLLK FW
Sbjct: 412 KISWNQVCKPKSEGGLGLRSLKEANDVCCLKLVWRIISHGDSLWVKWVEHNLLKREIFWI 471
Query: 753 VPIPQD-ASWSWRRILEQRNVAKDLIMTVLGDGEDTIMLNDLWHPKGRLVDWVDDNIIQT 577
V + SW W++IL+ R VAK +G+GE T D W GRL+D I+
Sbjct: 472 VKENANLGSWIWKKILKYRGVAKRFCKAEVGNGESTSFWFDDWSLLGRLIDVAG---IRG 528
Query: 576 WFPNGDSKVAEFIDQGQWCLTSCDDEAVLNVSNQVTSVEF----NLNERDKLIWTTSKN- 412
G S+ D + +LN +V S + ++ +++W +
Sbjct: 529 TIDMGISRTMSVADAWTSRRRRHHRQEILNTIEEVLSTQHQKRTQQQQQGRVLWKGKNDI 588
Query: 411 --GEFSLKDTYLTLSSSNDSPFWCDLVWFKYHILRHSFISWLALQGRLKTRAKLMQWGLM 238
+FS K+T+ L ++++ W VWF + ++SF WLA RL T A++++W
Sbjct: 589 YKDKFSTKNTWNYLRTTSNEVAWHKGVWFPHATPKYSFCLWLAAHDRLATGARMIKWNRG 648
Query: 237 STAPCPFCEDTVETESHLF 181
T C FC +ET HLF
Sbjct: 649 ETGDCTFCRQGIETRDHLF 667
Score = 62.8 bits (151), Expect(2) = e-135
Identities = 28/54 (51%), Positives = 40/54 (74%)
Frame = -2
Query: 2165 LTRPVSRDEIIEALSSIGSGKAPGPDGFTSLFFKVCWVVIGDDFVVAVQFFFLI 2004
LTR VS +EI + L S+ + K+PGPDGFTS FFK W ++G +F++A+Q FF +
Sbjct: 2 LTRVVSAEEIKKVLFSMPNDKSPGPDGFTSEFFKESWEILGPEFILAIQSFFAL 55
>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1389
Score = 333 bits (855), Expect(3) = e-134
Identities = 201/634 (31%), Positives = 327/634 (51%), Gaps = 10/634 (1%)
Frame = -1
Query: 2013 FFNKSKFMKEINSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLI 1834
FF+ +KE+N TF+ L+ K D P FRPI+ C+ IYK I+KII R+K L +I
Sbjct: 490 FFHSGYMLKEVNHTFLALIPKVDKPVNANHFRPISLCSTIYKVISKIITNRLKITLGKII 549
Query: 1833 HPSQSAFVSGRSIQDNILLAHEIVRNYHREVGTPR-CTLKIDLKKAYDTVNWQAILITLK 1657
HP Q AF+ R IQDNIL+AHE+ ++ + G +K+D++KAYD + W+ I T+
Sbjct: 550 HPLQGAFIPERLIQDNILIAHEVFHSFKNKTGRGGWIAIKLDMEKAYDRLEWKYIYTTMD 609
Query: 1656 KMGFPELFVNWIGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSII 1477
KMGF +++ WI CI+S +S+L+NG P F SRG+RQG PLSPYLF++ EL++
Sbjct: 610 KMGFSPIWIEWIRSCISSASFSVLVNGIPGERFFPSRGIRQGDPLSPYLFILCAELLARE 669
Query: 1476 FQQQISQ-GKF-GLHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLE 1303
F + + GK G+ T++ L FADD ++F K + ++ ++ + ++ +G
Sbjct: 670 FSKACHEPGKLIGVPIGRTRTRIPFLTFADDTMIFAKATEASCHKIRQILDKYCLMSGQL 729
Query: 1302 MNIHKTSLFSS--VVDADTLMEITSILDCSVEKLPIRYLGMPLLSTRLSYNDCLPLISRI 1129
+N HK++ S V D D + SIL YLG P++++R++ +IS+
Sbjct: 730 VNYHKSAFQCSPNVRDIDKV-NFASILGMQESSELGDYLGCPIINSRVTKETFAGVISKT 788
Query: 1128 LSRINAWKAKFVAYPGRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDM 949
+ ++ WKA ++ GR +LI++ LA + M F LPK+V+ + + ++ F W
Sbjct: 789 VQQLPKWKANSLSQAGRTVLIQSNLASKASFQMQSFTLPKKVLTTLDTTYRNFFWNKDPA 848
Query: 948 GKKYCPVKWTSICLPVHEGGLGVRDIEVTNIAANLRHVWNLVSGKESIWTD*VNHNLLKG 769
K + W IC P GG+G R EVTNIA ++ +W ++ K++IW V LK
Sbjct: 849 AKSANFIGWNKICQPKSVGGVGFRKAEVTNIALQMKLLWKIMVSKDNIWVKLVTQKYLKE 908
Query: 768 RNFWSVPIPQDASWSWRRILEQRNVAKDLIMTVLGDGEDTIMLNDLWHPKGRLVDWVDDN 589
+N IP +ASW W+ +L RN + ++GDG+D D W + + ++
Sbjct: 909 QNLLVCKIPSNASWQWKNLLRHRNFFSKGLRWLIGDGQDISFWTDNW-----IFQYPLNS 963
Query: 588 IIQTWFPNGDSKVAE-FIDQGQWCLTSCDDEAVLNVSNQVTSVEF-NLNERDKLIWTTSK 415
+ + KVAE F G W + N+ ++SV + +++D+L+W +
Sbjct: 964 KYVPTVGSENIKVAECFNGLGGWDIPKLLTLVPPNIVKAISSVFIPSSSQQDRLLWGLTP 1023
Query: 414 NGEFSLKDTYLTLSSSNDSPF---WCDLVWFKYHILRHSFISWLALQGRLKTRAKLMQWG 244
G++S+K + N + +W + + W A L T ++L +
Sbjct: 1024 TGQYSVKSGASLIREVNGGTIEKVEFNWIWGIHAPPKIKNFLWKACNDGLATTSRLERSH 1083
Query: 243 LMSTAPCPFCEDTVETESHLFHGCNFASQIWKGL 142
+ C FC+ ET HL C F I+ L
Sbjct: 1084 IFVPQNCCFCDCPSETICHLCFQCPFTLDIYSHL 1117
Score = 140 bits (352), Expect(3) = e-134
Identities = 98/347 (28%), Positives = 149/347 (42%), Gaps = 1/347 (0%)
Frame = -2
Query: 3047 ILKPSDKVGGAEVRPSHYQDFSVCVQDAQLMDLPFSGCFYTWFNKQ-GATRIGSKLDRIL 2871
I PSDK+GGA S ++ F+G +TW K+ G I +LDR +
Sbjct: 146 INSPSDKLGGAPFSSSRAYYMQNLFSQVDCTEISFTGQIFTWRKKKDGPNNIHERLDRGV 205
Query: 2870 VNIEWLDQFVNSKAEFLNPGVSGHSPGVATIFDKRKHGPLPFRFFNFLAEEADFLDLVRS 2691
+ WL F ++ + S H K PFRF D+ LV+
Sbjct: 206 ASTSWLMLFPHAFLKHHIFTSSDHCQISLEYLANNKSKAPPFRFEKMWCTRKDYDSLVKR 265
Query: 2690 VWTEKIRGNPMFVFTTKLNKVKAAIIAWKKMRFKNLSEQVFEAKKELEEVQKQIQVNPLC 2511
W K G+ MF F K VK W K +F N+ Q+ + + LEE+Q+ + ++
Sbjct: 266 TWCTKFYGSHMFNFVQKCKLVKINSKEWNKTQFGNIFRQLRQVDERLEEIQRNLLIDHNN 325
Query: 2510 PHLAQKEKVVVRHYSKVARYEESEKHQKSRVQWLKLGDSNTSFFHYSIKERRSRNNISTL 2331
L ++++ + +K+ Y + QK + ++ LGD+N+ F+H R+ RN I
Sbjct: 326 TSLKTQQELFLAKRNKLLEYNTTYWKQKCKSDFMVLGDTNSKFYHTHASIRKYRNQIKEF 385
Query: 2330 KSQNNILLEDDKEIAEECIDFFSKLYDEEGRKVTDGSGIESLKFDKIVDEASCVELTRPV 2151
N + I +E F K + ++ IV EA LT V
Sbjct: 386 IPDNAQPITQPDLIEKEITLAFKKRF-ISNPACKFNQNVDFNLLSPIVSEADNAYLTSAV 444
Query: 2150 SRDEIIEALSSIGSGKAPGPDGFTSLFFKVCWVVIGDDFVVAVQFFF 2010
S +EI A+ + K+PGPDGF FF+ W +IG AVQ FF
Sbjct: 445 SPEEIKNAVFDLAPDKSPGPDGFPPYFFQKYWTLIGKSVCRAVQAFF 491
Score = 57.8 bits (138), Expect(3) = e-134
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 4/143 (2%)
Frame = -1
Query: 3468 IAIWNIRGSNDPLKQVEVSSLIRSSEFSIIGLVETHVQSINASRIRNKIMPKWHFIDNYN 3289
IA WN+RG E S +++ I+ L ET QS S++ H
Sbjct: 3 IAFWNVRGGCRKNVMEECSDFCKNNNIKILMLCETKSQS-PPSQLAVSAAGFLHHDSIPA 61
Query: 3288 NDDSGRIWIGWN---LDSVKVSLIHSSSQVIFVEVDTV-ENISFVAAFVYENNDGVLRRA 3121
SG +W+ W L+ + +I+ S + I ++ + +N+ FVA F+Y + +
Sbjct: 62 MGYSGGLWLFWRDCILNPFSLVVIYKSVRFIACSINLLNQNLQFVAIFIYAPAQKEFKSS 121
Query: 3120 LWTDITAFSQINSKPWIVLGDFN 3052
W ++ A+ S P+I+LGDFN
Sbjct: 122 FWDELIAYVSSLSFPFIILGDFN 144
>emb|CCA66188.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1381
Score = 322 bits (824), Expect(3) = e-133
Identities = 218/657 (33%), Positives = 324/657 (49%), Gaps = 36/657 (5%)
Frame = -1
Query: 2013 FFNKSKFMKEINSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLI 1834
F+N K N FI L+AK++ P + DFRPI+ IYK I K++A R++ V+ SLI
Sbjct: 474 FWNSGSLPKGSNVAFIALIAKREVPEGLNDFRPISMVGCIYKIIAKLLARRLQKVMDSLI 533
Query: 1833 HPSQSAFVSGRSIQDNILLAHEIVRNYHREVGTPRCTLKIDLKKAYDTVNWQAILITLKK 1654
P QS+F++GR I D L+A E++ R+ LK+D KA+D+V W + TL K
Sbjct: 534 GPYQSSFIAGRQILDGALIAGELIDTCRRKK-VQLSILKLDFHKAFDSVAWSFLDWTLDK 592
Query: 1653 MGFPELFVNWIGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSIIF 1474
MGFP + WI CITS SILINGSP F RGLRQG PLSP+LF +V+E +S++
Sbjct: 593 MGFPPRWRMWISSCITSAAASILINGSPTAPFKLHRGLRQGDPLSPFLFDLVVETLSLVI 652
Query: 1473 QQQISQGKF-GLHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLEMN 1297
Q+ G + G+ K+THL +ADD ++F + +K + F +GL++N
Sbjct: 653 QKASHLGLWEGVEVTKNGEKITHLQYADDTIIFCPPNLDYLLNIKKTLILFQLASGLQVN 712
Query: 1296 IHKTSLFSSVVDADTLMEITSILDCSVEKLPIRYLGMPLLS--TRLSYNDCLPLISRILS 1123
HK+S+ VD L E + L C V +LP YLG+P+ +RL++ D P+I +I
Sbjct: 713 FHKSSIMGIHVDEIWLQEAANALLCKVGRLPFTYLGLPIGGNISRLAHWD--PIIKKIEG 770
Query: 1122 RINAWKAKFVAYPGRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDMGK 943
++ +WK + ++ GR+ LIK ++ + Y+MS F P+ VI+ I + + FLW+G
Sbjct: 771 KLASWKGRMLSIAGRITLIKASISSLPLYYMSLFPAPRGVIEAINKLQRNFLWSGELRKS 830
Query: 942 KYCPVKWTSICLPVHEGGLGVRDIEVTNIAANLRHVWNLVSGKESIWTD*V--NHNLLKG 769
V W + LP GGL ++ NI+ + +W L ES+W + +
Sbjct: 831 SLALVAWNQVVLPKESGGLNCGNLLNRNISLLFKWIWRLSHDPESLWQKVIKEKYGYSHT 890
Query: 768 RNFWSVPIPQDASWSWRRIL-------EQRNVAKDLIMTVLGDGEDTIMLNDLWHPKGRL 610
+ IP+ S WR I R+ K + +G+G T+ W L
Sbjct: 891 TTVHDLCIPK-GSGPWRFICASILNHPSARSFVKTKLRKAVGNGVKTL----FW-----L 940
Query: 609 VDWVDDNIIQTWFPN----GDSKVAEFIDQGQWC-------------LTSCDDEAVLNVS 481
W+ D+ ++ FP D+ +A G WC D E +
Sbjct: 941 DTWLGDSPLKLRFPRLFTIVDNPMAYIASCGSWCGREWVWNFSWSRVFRPRDAEEWEELQ 1000
Query: 480 NQVTSVEFNLNERDKLIWTTSKNGEFSLKDTYLTLSSSNDSP-----FWCDLVWFKYHIL 316
+ SV + + D+LIWT K+G FS+K L+++ P W L W
Sbjct: 1001 GLLGSVCLSPSTDDRLIWTPHKSGAFSVKSCSKELTNTALKPQSKIRIWGRL-WRGLIPP 1059
Query: 315 RHSFISWLALQGRLKTRAKLMQWGLM--STAPCPFCEDTVETESHLFHGCNFASQIW 151
R SW+AL G+L +R KL ++ A C C ET HL C FAS IW
Sbjct: 1060 RIEVFSWVALLGKLNSRQKLATLNIIPPDDAVCIMCNGAPETSDHLLLHCPFASSIW 1116
Score = 151 bits (382), Expect(3) = e-133
Identities = 106/353 (30%), Positives = 162/353 (45%), Gaps = 7/353 (1%)
Frame = -2
Query: 3047 ILKPSDKVGGAEVRPSHYQDFSVCVQDAQLMDLPFSGCFYTWFNKQGATRIGSKLDRILV 2868
+L PSD+ G + DF +Q LM++ S ++TWF+ Q SKLDR+LV
Sbjct: 145 VLDPSDRGSGISSQLG-VLDFKNFIQQTHLMEISASDGWFTWFSGQAK----SKLDRLLV 199
Query: 2867 NIEWLDQFVNSKAEFLNPGVSGHSPGVATIFDKRKHGPLPFRFFNFLAEEADFLDLVRSV 2688
N EW+ F + + L +S H P + D+ GP PFRF N L +++ V
Sbjct: 200 NPEWVSLFPSLQVSILRRNLSDHCP-LLVKSDELNWGPRPFRFQNCWLSHPGCLQIIKDV 258
Query: 2687 WTEKIRGNPMFVFTTKLNKVKAAIIAWKKMRFKNLSEQVFEAKKELEEVQKQIQVNPLCP 2508
W GN T KL + K + W F ++ + E + + + L
Sbjct: 259 WASHTSGN----LTDKLKETKKRLKIWNSSEFGHIDRNIEELEDRIHNLDLISNGRDL-- 312
Query: 2507 HLAQKEKVVVRHYSKVA-----RYEESEKHQKSRVQWLKLGDSNTSFFHYSIKERRSRNN 2343
Q E++ R S++ R +E+ Q SR +W+K GD NT +FH R+ +N
Sbjct: 313 ---QLEELAERRSSQMELWVWLRRKEAFWAQNSRAKWIKEGDKNTKYFHTLASTRKKKNT 369
Query: 2342 ISTLKSQNNILLEDDKEIAEECIDFFSKLYDEE--GRKVTDGSGIESLKFDKIVDEASCV 2169
I L + N ++ D I E + FF ++ E+ R V +G SL +++
Sbjct: 370 IPALITNNGVV-SDPAGIHHEAVSFFKSIFKEDFSSRPVFNGLQFRSLSCEQVS------ 422
Query: 2168 ELTRPVSRDEIIEALSSIGSGKAPGPDGFTSLFFKVCWVVIGDDFVVAVQFFF 2010
+LT P S E+ EA+ S KAPGPDG+ F K W +I D V+ F+
Sbjct: 423 QLTEPFSHKEVDEAVESCDPQKAPGPDGYNFRFIKDSWDIIKLDVYNIVENFW 475
Score = 55.5 bits (132), Expect(3) = e-133
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 4/147 (2%)
Frame = -1
Query: 3468 IAIWNIRGSNDPLKQVEVSSLIRSSEFSIIGLVETHVQSINASRIR---NKIMPKWHFID 3298
I WNIRG N +K+ + LI + I L ET ++S+N IR N W FI
Sbjct: 3 IISWNIRGLNARVKKSSLRKLISRHDPKFIFLQETKMESLNPKTIRSIWNSDDIDWLFIP 62
Query: 3297 NYNNDDSGRIWIGWNLDSVKVSLIHSSSQVIFVEVD-TVENISFVAAFVYENNDGVLRRA 3121
+ N SG + W +D ++ S + I + +N V VY V R
Sbjct: 63 SIGN--SGGLLSMWKIDYFSLTSHKSENNWIALNGKIPSKNFQGVLVNVYNPCCRVSRSK 120
Query: 3120 LWTDITAFSQINSKPWIVLGDFNSYIE 3040
+WT I+ + + P +++GDFN ++
Sbjct: 121 VWTSISDYWAESQSPMLMVGDFNEVLD 147
>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|20197043|gb|AAM14892.1| putative reverse transcriptase
[Arabidopsis thaliana]
Length = 1412
Score = 368 bits (944), Expect(3) = e-133
Identities = 170/414 (41%), Positives = 266/414 (64%)
Frame = -1
Query: 2013 FFNKSKFMKEINSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLI 1834
FF K +NST + L+ K+ E+ D+RPI+CCNV+YK I+K++A R+K +L I
Sbjct: 765 FFTYGFLPKGLNSTILALIPKRTYAKEMKDYRPISCCNVLYKAISKLLANRLKCLLPEFI 824
Query: 1833 HPSQSAFVSGRSIQDNILLAHEIVRNYHREVGTPRCTLKIDLKKAYDTVNWQAILITLKK 1654
P+QSAF+S R + +N+LLA E+V++YH++ +PRC +KIDL KA+D+V W +L TL
Sbjct: 825 APNQSAFISDRLLMENLLLASELVKDYHKDGLSPRCAMKIDLSKAFDSVQWPFLLNTLAA 884
Query: 1653 MGFPELFVNWIGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSIIF 1474
+ PE F++WI LCI++ +S+ +NG LRQGC LSPYLFV+ M ++S +
Sbjct: 885 LDIPEKFIHWINLCISTASFSVQVNG-----------LRQGCSLSPYLFVICMNVLSAML 933
Query: 1473 QQQISQGKFGLHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLEMNI 1294
+ + +FG HPRC+ LTHLCFADD++VF GS + + +F A++GL +++
Sbjct: 934 DKGAVEKRFGYHPRCRNMGLTHLCFADDIMVFSAGSAHSLEGVLAIFKDFAAFSGLNISL 993
Query: 1293 HKTSLFSSVVDADTLMEITSILDCSVEKLPIRYLGMPLLSTRLSYNDCLPLISRILSRIN 1114
K++LF + + ++T I + LP+RYLG+PL++ R++ DCLPL+ +I SRI+
Sbjct: 994 EKSTLFMASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRIS 1053
Query: 1113 AWKAKFVAYPGRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDMGKKYC 934
+WK +F++Y GRL L+ +V++ + +W+S F LP+ I+EI I FLW+G D+
Sbjct: 1054 SWKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFLWSGTDLNPHKA 1113
Query: 933 PVKWTSICLPVHEGGLGVRDIEVTNIAANLRHVWNLVSGKESIWTD*VNHNLLK 772
V W +C P EGGLG+R + N + +W LVS K S+W + + +NL++
Sbjct: 1114 KVAWHDVCKPKSEGGLGLRSLVDANKICCFKLIWRLVSAKHSLWVNWIQNNLIR 1167
Score = 93.6 bits (231), Expect(3) = e-133
Identities = 82/337 (24%), Positives = 133/337 (39%), Gaps = 9/337 (2%)
Frame = -2
Query: 2993 QDFSVCVQDAQLMDLPFSGCFYTWFNKQGATRIGSKLDRILVNIEWLDQFVNSKAEFLNP 2814
+DF + V+ L D+ G +TW NK+ I KLDR+L+N E+ + +S +
Sbjct: 468 RDFQIVVRYCSLEDMRTHGPLFTWGNKRNEGLICKKLDRVLLNPEYNSAYPHSYCIMDSG 527
Query: 2813 GVSGHSPGVATIFDKRKHGPLPFRFFNFLAEEADFLDLVRSVWTEKIRGNP----MFVFT 2646
G S H G + + PF+F N +A +F+ V W P +F F+
Sbjct: 528 GCSDHLRGRFHLRSAIQKPKGPFKFTNVIAAHPEFMPKVEDFWKNTTELFPSTSTLFRFS 587
Query: 2645 TKLNKVKAAIIAWKKMRFKNLSEQVFEAKKELEEVQKQIQVNPLCPHLAQKEKVVVRHYS 2466
KL ++K + + +L+ + A +EL Q + + L PH E + +
Sbjct: 588 KKLKELKPILKDLSRNNLSDLTRRATYAYEELCRCQTK-SLTTLNPHDIVDESLAFERWE 646
Query: 2465 KVARYEESEKHQKSRVQWLKLGDSNTSFFHYSIKERRSRNNISTLKSQNNILLEDDKEIA 2286
K ER N I + + +I
Sbjct: 647 K---------------------------------ERHLLNAIHEVMDPQGTRPPNQDDIK 673
Query: 2285 EECIDFFSKLYDEE-----GRKVTDGSGIESLKFDKIVDEASCVELTRPVSRDEIIEALS 2121
E + FFS L + G V + GI ++ E+T E+++
Sbjct: 674 IEAVRFFSDLLSSQPSDFTGISVDELKGILQYRYSLHEQNLLVAEITEA----EVMKVFF 729
Query: 2120 SIGSGKAPGPDGFTSLFFKVCWVVIGDDFVVAVQFFF 2010
SI K+PGPDG+T FF+ W VIG + +A++ FF
Sbjct: 730 SIPLNKSPGPDGYTVEFFRETWSVIGQEVTMAIKSFF 766
Score = 66.6 bits (161), Expect(3) = e-133
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Frame = -1
Query: 3375 LVETHVQSINASRIRNKIMPKWHFIDNYNNDDSGRIWIGWNLDSVKVSLIHSSSQVIFVE 3196
++ET V I K+ W + NY + GRIW+ W+ SV++ +I SSQ+I
Sbjct: 336 VLETRVIESKVPVIFAKVFKDWQMVSNYEFNRLGRIWVVWS-SSVQLQVIFKSSQMIVCL 394
Query: 3195 VDTVE-NISFVAAFVYENNDGVLRRALWTDITAFSQ---INSKPWIVLGDFNSYIE 3040
V ++ F+ +F+Y +N R+ LW D+ +KPW++ GDFN ++
Sbjct: 395 VRVEHYDVEFICSFIYASNFVEERKKLWQDLHNLQNSVAFRNKPWLLFGDFNETLK 450
Score = 62.0 bits (149), Expect = 3e-06
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Frame = -1
Query: 609 VDWVDDNIIQTWFPNGDSKVAEFIDQGQWCLTSCDDEAVLNVSNQVTSVEFN--LNERDK 436
V+W+ +N+I+T VAE + + S D+ + ++ ++ + E+D+
Sbjct: 1158 VNWIQNNLIRT--------VAEALSSHR--RRSHRDDILNDIEEELEKLLCRGICTEQDR 1207
Query: 435 LIWTTSKNGEFSLK----DTYLTLSSSNDSPFWCDLVWFKYHILRHSFISWLALQGRLKT 268
+ S G+F K + + + W +WF + +FISWLA RL T
Sbjct: 1208 SL-CRSIGGQFKAKFFSPEIWHQIREQGLVKQWHKAIWFSGATPKFTFISWLAAHDRLTT 1266
Query: 267 RAKLMQWGLMSTAPCPFCEDTVETESHLFHGCNFASQIWKGL 142
K+ W ++ C C + E+ HLF CNF+S IW L
Sbjct: 1267 GDKMASWNRGISSVCVLCNISAESRDHLFFSCNFSSHIWDRL 1308
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 379 bits (972), Expect(3) = e-132
Identities = 184/461 (39%), Positives = 286/461 (62%), Gaps = 1/461 (0%)
Frame = -1
Query: 1983 INSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLIHPSQSAFVSG 1804
+N+T + L+ KKD + + D+RPI+CCNVIYK I+KIIA R+K +L + I +QSAFV
Sbjct: 651 LNATILALIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRE 710
Query: 1803 RSIQDNILLAHEIVRNYHREVGTPRCTLKIDLKKAYDTVNWQAILITLKKMGFPELFVNW 1624
R + +N+LLA E+V++YH++ +PRC +KID+ KA+D+V WQ +L TL+ + FPE F +W
Sbjct: 711 RLLMENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALKFPEKFRHW 770
Query: 1623 IGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSIIFQQQISQGKFG 1444
I LCI++ +S+ +N G+FG+ RGLRQGC LSPYLFV+ M ++S + G
Sbjct: 771 IKLCISTATFSVQVNSEQAGFFGSKRGLRQGCALSPYLFVICMNVLSHMIDVAAVHRNIG 830
Query: 1443 LHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLEMNIHKTSLFSSVV 1264
HP+CK LTHLCFADD++VF G + + N +F +GL +++ K++L+ + V
Sbjct: 831 YHPKCKKLSLTHLCFADDLMVFIDGQQRSVEGVINIFKDFAGKSGLHISLEKSTLYLAEV 890
Query: 1263 DADTLMEITSILDCSVEKLPIRYLGMPLLSTRLSYNDCLPLISRILSRINAWKAKFVAYP 1084
I S + +LP+RYLG PLL+ +++ D PL+ ++ S+I++W A+ ++Y
Sbjct: 891 SELNRNNILSAFPFASGQLPVRYLGFPLLTKQMTTADYSPLLDKVRSKISSWTARSLSYA 950
Query: 1083 GRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDMGKKYCPVKWTSICLP 904
GRL LI +V+ + +WMS + LP IKEI + FLW+G ++ K + WTS+C
Sbjct: 951 GRLALINSVIVSLSNFWMSAYRLPAGCIKEIEKLCSAFLWSGPELNPKKAKITWTSLCKL 1010
Query: 903 VHEGGLGVRDIEVTNIAANLRHVWNLVSGKESIWTD*VNHNLLKGRNFWSVPIPQD-ASW 727
EGGLG++ + N + L+ +W LVS + S+W + V +++ +FWS SW
Sbjct: 1011 KQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSW 1070
Query: 726 SWRRILEQRNVAKDLIMTVLGDGEDTIMLNDLWHPKGRLVD 604
W+++L R+VAK + + G T D W +LVD
Sbjct: 1071 MWKKLLNYRDVAKSMCKVEIKSGSSTSFWYDNWSQLRQLVD 1111
Score = 89.7 bits (221), Expect(3) = e-132
Identities = 85/316 (26%), Positives = 129/316 (40%), Gaps = 5/316 (1%)
Frame = -2
Query: 3005 PSHYQDFSVCVQDAQLMDLPFSGCFYTWFNKQGATRIGSKLDRILVNIEWLDQFVNSKAE 2826
P +DF V+ + L DL + G +TW NK+ I KLD++LVN W F +S +
Sbjct: 408 PLGMRDFQEVVRYSSLTDLGYHGPRFTWCNKRENGLICKKLDKVLVNDSWCITFPHSYSV 467
Query: 2825 FLNPGVSGHSPGVATIFDKRKHGPLPFRFFNFLAEEADFLDLVRSVWTEKIRGNPMFVFT 2646
F G S H+ G + G PF+F N L L R++ EK+ P
Sbjct: 468 FEAGGCSDHTRGRIMLEAAAIGGRRPFKFVNVLTSIPQKPSL-RALGKEKLGDLP----- 521
Query: 2645 TKLNKVKAAIIAWKKMRFKNLSEQVFEAKKELEEVQKQIQVNPLCPHLAQKEKVVVRHYS 2466
K LEE ++ QK K+ H+
Sbjct: 522 -----------------------------KHLEE-----------GYMKQKSKL---HWM 538
Query: 2465 KVARYEESEKHQKSRVQWLKLGDSNTSFFHYSIKERRSRNNISTLKSQNNILLEDDKEIA 2286
KV GD N S+FH + + RR +N+I ++ N ++L+ +EI
Sbjct: 539 KV-------------------GDRNNSYFHKAAQVRRMQNSIREIQGPNGVVLQTSEEIK 579
Query: 2285 EECIDFFSKLY-----DEEGRKVTDGSGIESLKFDKIVDEASCVELTRPVSRDEIIEALS 2121
E FF + D +G V + + S + + LTR V+ +EI + L
Sbjct: 580 GEAERFFQEFLNHQPSDFQGMTVEELQNLMSFRCSATDQDM----LTREVTSEEIQKVLF 635
Query: 2120 SIGSGKAPGPDGFTSL 2073
++ S K+PGPDG+T L
Sbjct: 636 AMPSNKSPGPDGYTRL 651
Score = 55.8 bits (133), Expect(3) = e-132
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Frame = -1
Query: 3312 WHFIDNYNNDDSGRIWIGWNLDSVKVSLIHSSSQVIFVEVDTV-ENISFVAAFVYENNDG 3136
W + NY + GRIW+ W+ +V+++ + SSQ+I V + F +F+Y +N
Sbjct: 301 WSILTNYESHRLGRIWVVWSA-NVRITPVFKSSQMITCSVLLEGKEEEFFCSFIYASNFV 359
Query: 3135 VLRRALWTDITAFSQ---INSKPWIVLGDFNSYIE 3040
R+ LW DI +KPW++ GDFN ++
Sbjct: 360 EERKILWEDIRNHHDSPLFRNKPWMLCGDFNEILD 394
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 335 bits (860), Expect(3) = e-132
Identities = 159/373 (42%), Positives = 241/373 (64%)
Frame = -1
Query: 2013 FFNKSKFMKEINSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLI 1834
FF K K INST + L+ KK E+ D+RPI+CCNV+YK I+KIIA R+K VL I
Sbjct: 387 FFAKGFLPKGINSTILALIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFI 446
Query: 1833 HPSQSAFVSGRSIQDNILLAHEIVRNYHREVGTPRCTLKIDLKKAYDTVNWQAILITLKK 1654
+QSAFV R + +N+LLA EIV++YH++ + RC LKID+ KA+D+V W+ ++ L+
Sbjct: 447 VGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEA 506
Query: 1653 MGFPELFVNWIGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSIIF 1474
M FP F +WI LCIT+ +S+ +NG G F ++R LRQGC LSPYLFV+ M+++S +
Sbjct: 507 MNFPPEFTHWITLCITTASFSVQVNGELAGVFSSARELRQGCSLSPYLFVISMDVLSKML 566
Query: 1473 QQQISQGKFGLHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLEMNI 1294
+ + +FG HP+C+ LTHL FADD+++ G + + + EF ++GL++++
Sbjct: 567 DKAVGARQFGYHPKCRAIGLTHLSFADDLMILSDGKVRSIDGIVKVLYEFAKWSGLKISM 626
Query: 1293 HKTSLFSSVVDADTLMEITSILDCSVEKLPIRYLGMPLLSTRLSYNDCLPLISRILSRIN 1114
K++++ + V A EI V KLP+RYLG+PL+S RL+ +DCLPLI ++ +I
Sbjct: 627 EKSTMYLAGVQASVYQEIVQKFSFDVGKLPVRYLGLPLVSKRLTASDCLPLIEQLRKKIE 686
Query: 1113 AWKAKFVAYPGRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDMGKKYC 934
AW ++F+++ GRL LI + L + +WM+ F LP+ I+EI + FLW+G ++
Sbjct: 687 AWTSRFLSFAGRLNLISSTLWSICNFWMAAFRLPRACIREIDKLCSAFLWSGTELSSNKA 746
Query: 933 PVKWTSICLPVHE 895
V W +IC P E
Sbjct: 747 KVSWEAICKPKKE 759
Score = 152 bits (384), Expect(3) = e-132
Identities = 104/342 (30%), Positives = 164/342 (47%), Gaps = 14/342 (4%)
Frame = -2
Query: 2993 QDFSVCVQDAQLMDLPFSGCFYTWFNKQGATRIGSKLDRILVNIEWLDQFVNSKAEFLNP 2814
+DF + V + DL + G +TW NK+ I KLDR+LVN WL F S + F
Sbjct: 54 RDFQMAVNHCSITDLAYHGPLFTWSNKRENDLIAKKLDRVLVNDVWLQSFPRSYSVFEAG 113
Query: 2813 GVSGH-------SPGVATIFDKRKHGPLPFRFFNFLAEEADFLDLVRSVWTEK----IRG 2667
G S H + G + G PF+F N + E F+ V S W E +
Sbjct: 114 GCSDHLRCRINLNVGAGAVVK----GKRPFKFVNVITEMEHFIPTVESYWNETEAIFMST 169
Query: 2666 NPMFVFTTKLNKVKAAIIAWKKMRFKNLSEQVFEAKKELEEVQKQIQVNPLCPHLAQKEK 2487
+ +F F+ KL +K + K R NL +Q EA + L + Q NP P Q+E
Sbjct: 170 SSLFRFSKKLKGLKPLLRNLGKERLGNLVKQTKEAFETLCQKQAMKMANP-SPSSMQEEN 228
Query: 2486 VVVRHYSKVARYEESEKHQKSRVQWLKLGDSNTSFFHYSIKERRSRNNISTLKSQNNILL 2307
+ +A EE Q+S++ WL +GD N FH ++ R ++N+I + + +
Sbjct: 229 EAYAKWDHIAVLEEKFLKQRSKLHWLDIGDRNNKAFHRAVVAREAQNSIREIICHDGSVA 288
Query: 2306 EDDKEIAEECIDFFSKLYDEEGRKVTDGSGIESLKFDKIVDEASCVE---LTRPVSRDEI 2136
+++I E F + +G +E L+ D + S + LT VS +EI
Sbjct: 289 SQEEKIKTEAEHHFREFLQLIPNDF-EGIAVEELQ-DLLPYRCSDSDKEMLTNHVSAEEI 346
Query: 2135 IEALSSIGSGKAPGPDGFTSLFFKVCWVVIGDDFVVAVQFFF 2010
+ + S+ + K+PGPDG+T+ F+K W +IG +F++A+Q FF
Sbjct: 347 HKVVFSMPNDKSPGPDGYTAEFYKGAWNIIGAEFILAIQSFF 388
Score = 35.4 bits (80), Expect(3) = e-132
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = -1
Query: 3129 RRALWTDITAFSQ---INSKPWIVLGDFNSYIE 3040
R+ LW D+ S I SKPWI+ GDFN ++
Sbjct: 4 RKELWNDLRDHSDSPIIRSKPWIIFGDFNEILD 36
Score = 69.3 bits (168), Expect = 2e-08
Identities = 31/79 (39%), Positives = 43/79 (54%)
Frame = -1
Query: 351 WCDLVWFKYHILRHSFISWLALQGRLKTRAKLMQWGLMSTAPCPFCEDTVETESHLFHGC 172
W VWF + +HSF WLA+ +L T ++ W L S+ C C + +ET HLF C
Sbjct: 761 WHKGVWFAHETPKHSFCVWLAIWNKLSTGQRMQHWNLQSSVGCVLCNNNLETRDHLFFSC 820
Query: 171 NFASQIWKGLLLNGILQGS 115
+ S IW+ L N +LQ S
Sbjct: 821 AYTSGIWEALAKN-LLQRS 838
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 432 bits (1111), Expect(2) = e-130
Identities = 228/635 (35%), Positives = 362/635 (57%), Gaps = 11/635 (1%)
Frame = -1
Query: 2013 FFNKSKFMKEINSTFITLVAKKDNPSEVVDFRPIACCNVIYKCITKIIALRMKGVLKSLI 1834
FF K K INS + L+ KK E+ D+RPI+CCNV+YK I+KIIA R+K +L I
Sbjct: 146 FFQKGFLPKGINSIILALIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFI 205
Query: 1833 HPSQSAFVSGRSIQDNILLAHEIVRNYHREVGTPRCTLKIDLKKAYDTVNWQAILITLKK 1654
+QSAFV R + +N+LLA E+V++YH++ + RC +KID+ KA+D+V W + TL
Sbjct: 206 AENQSAFVKDRLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTLVA 265
Query: 1653 MGFPELFVNWIGLCITSPKYSILINGSPYGYFGASRGLRQGCPLSPYLFVMVMELMSIIF 1474
M F F++WI LCIT+ +S+ +NG GYF + RGLRQGC LSPYLFV+ M+++S +
Sbjct: 266 MNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSPYLFVICMDVLSKML 325
Query: 1473 QQQISQGKFGLHPRCKLTKLTHLCFADDVLVFFKGSCSAATTLKNCITEFTAYTGLEMNI 1294
+ KFG HP+C+ LTHL FADD++V G + + EF +GL +++
Sbjct: 326 DKAAGVRKFGFHPKCQRLGLTHLSFADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISL 385
Query: 1293 HKTSLFSSVVDADTLMEITSILDCSVEKLPIRYLGMPLLSTRLSYNDCLPLISRILSRIN 1114
K++L+ + V EI + V +LP+RYLG+PL++ RL+ D PL+ +I RI
Sbjct: 386 EKSTLYMAGVSPIIKQEIAAKFLFDVGQLPVRYLGLPLVTKRLTSADYSPLLEQIKKRIA 445
Query: 1113 AWKAKFVAYPGRLMLIKTVLAGMVFYWMSCFILPKRVIKEITSIFKKFLWAGCDMGKKYC 934
W +F ++ GR LIK+VL + +W++ F LP++ I+EI + FLW+G +M
Sbjct: 446 TWTFRFFSFAGRFNLIKSVLWSICNFWLAAFRLPRQCIREIDKLCSSFLWSGSEMSSHKA 505
Query: 933 PVKWTSICLPVHEGGLGVRDIEVTNIAANLRHVWNLVSGKESIWTD*VNHNLLKGRNFWS 754
+ W +C P EGGLG+R+++ N + L+ VW ++S S+WT V L++ ++ WS
Sbjct: 506 KISWDIVCKPKAEGGLGLRNLKEANDVSCLKLVWRIISNSNSLWTKWVAEYLIRKKSIWS 565
Query: 753 VPIPQD-ASWSWRRILEQRNVAKDLIMTVLGDGEDTIMLNDLWHPKGRLVDWV-DDNIIQ 580
+ SW WR+IL+ R+VAK +G+GE D W GRL+D V D I
Sbjct: 566 LKQSTSMGSWIWRKILKIRDVAKSFSRVEVGNGESASFWYDHWSAHGRLIDTVGDKGTID 625
Query: 579 TWFPNGDSKVAEFIDQGQWCLTS--CDDEAVLNVSNQVTSVE--FNLNERDKLIWTTSKN 412
P ++ VA+ W S ++LN ++ + + + + D ++W +
Sbjct: 626 LGIPR-EASVAD-----AWTRRSRRRHRTSLLNEIEEMMAYQRIHHSDAEDTVLWRGKND 679
Query: 411 ---GEFSLKDTYLTLSSSNDSPFWCDLVWFKYHILRHSFISWLALQGRLKTRAKLMQWGL 241
FS +DT+ + +++ + W VWF++ +++ +WLA+ RL T ++++W
Sbjct: 680 VFKPHFSTRDTWHLIKATSSTVSWHKGVWFRHATPKYALCTWLAIHNRLPTGDRMLKWNS 739
Query: 240 MSTAP--CPFCEDTVETESHLFHGCNFASQIWKGL 142
+ C C + +T HLF C++AS +W L
Sbjct: 740 SGSVSGNCVLCTNNSKTLEHLFFSCSYASTVWAAL 774
Score = 63.9 bits (154), Expect(2) = e-130
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 7/131 (5%)
Frame = -2
Query: 2381 FHYSIKERRSRNNISTLKSQNNILLEDDKEI--AEECIDFFSKLYDEEGRKVTDGSGIES 2208
FH ++ ER ++N I + + +++ D + AE+ F +L E D G+E
Sbjct: 24 FHRAVIERETKNMIKEIYCTDGRVVQGDDIMVEAEKFFKEFLQLIPE------DFVGVEV 77
Query: 2207 LKFDKIVDEASCVE-----LTRPVSRDEIIEALSSIGSGKAPGPDGFTSLFFKVCWVVIG 2043
+ ++ + C LTR VS +EI L S+ K+PGPDG+TS F+K W +IG
Sbjct: 78 RELQDLL-QFRCTNSDNEMLTREVSSEEIKTVLFSMPKDKSPGPDGYTSEFYKATWDIIG 136
Query: 2042 DDFVVAVQFFF 2010
+F + VQ FF
Sbjct: 137 QEFTLPVQSFF 147