BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00018446
         (4316 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...  1534   0.0  
emb|CBI16226.3| unnamed protein product [Vitis vinifera]             1479   0.0  
ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao...  1432   0.0  
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...  1420   0.0  
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...  1417   0.0  
ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s...  1407   0.0  
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...  1407   0.0  
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s...  1406   0.0  
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A...  1399   0.0  
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g...  1398   0.0  
ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s...  1391   0.0  
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S...  1388   0.0  
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [...  1375   0.0  
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s...  1370   0.0  
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s...  1364   0.0  
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr...  1359   0.0  
gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus...  1355   0.0  
gb|EPS62830.1| hypothetical protein M569_11956, partial [Genlise...  1335   0.0  
tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family...  1335   0.0  
ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phas...  1332   0.0  

>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score = 1534 bits (3972), Expect = 0.0
 Identities = 764/1073 (71%), Positives = 882/1073 (82%), Gaps = 12/1073 (1%)
 Frame = +1

Query: 127  IQFTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQDRKPKKNALLDSRM 306
            IQFTK+PY+EDVGPRKI+SI+F++ S +EI KA+E+QV+   +YD +RKP +N LLD RM
Sbjct: 5    IQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLDPRM 64

Query: 307  GPANKFITCATCHGSLTDCPGHYGYFHLILPVFNVGYFNAILNVLKCVCKSCARILLSER 486
            GPANK  TCATC G+  DCPGH GY  L LPV+NVGY + I+++LKC+CKSC+R+LL E+
Sbjct: 65   GPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLLDEK 124

Query: 487  DRISYLKKMRNPKLEALQKTGLAKAILNKC-------KPKKCSRCGYINGVVKKSGTVMG 645
                YLKKMR+ K+EAL+K  L K I+ KC       K  KCSRCGY+NG+VKK+ +V+G
Sbjct: 125  ASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVSVLG 184

Query: 646  IVHDRSKLMDGVKEECEAAISKTKDSRTSFTVVYVLNPVRVLDLFRRILDQDCDLLYLSD 825
            I+HDRSK+ DG  EEC +AIS TK+S+ SF+VV +LNPV+VL LF+R++D+DCDLL L++
Sbjct: 185  IIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLLNLAE 244

Query: 826  RPEKLIITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTIIQANTSLRQDLHCTSPTSK 1005
            RPEKL++T+I VPPIAIRPS F+DGG  SNE+D+T +L  IIQAN SL Q+L  T  TSK
Sbjct: 245  RPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGSTSK 304

Query: 1006 CLAAWELLQVEVAQYINSDVRGVPLSMQSSKPLRGFIQRLKGKQGRFRGNLSGKRVEYTA 1185
            CLA W+ LQ+EVAQYINSDVRGVPL+MQ+++PL GF+QRLKGKQGRFRGNLSGKRVEYT 
Sbjct: 305  CLAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 364

Query: 1186 RTVISPDPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRKCVANGPQKYPGANFIRLAS 1365
            RTVISPDPNLKITEV IPIL+A++L+YPE VS +NIEKLR+C+ NGP KYPGA  IR   
Sbjct: 365  RTVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIRYPD 424

Query: 1366 GSLQNLRYGRRKGYADALKYGDTVERHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTL 1545
            GS+++L +  RK +AD LKYG  VERHLEDGDVVLFNRQPSLHRMSIM HRA+IMPWRTL
Sbjct: 425  GSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTL 484

Query: 1546 RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 1725
            RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL
Sbjct: 485  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 544

Query: 1726 TSSFLITRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNVLIRPHA 1905
            TSSFLITR+DTFYDRA+FSLMCSYMGD MD +DLPTPA+IKPVELWTGKQLFNVL+RPHA
Sbjct: 545  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKPVELWTGKQLFNVLLRPHA 604

Query: 1906 QMRVFVNLTVFEKSYNK--GRETLCPNDGFVYFRNSELICGQLGKATLGNGNKDGLFSVL 2079
             +RV++NLTV EK+YNK  G+ET+CP+DGFVYFRNSELI GQLGKATLGNGNKDGLFSVL
Sbjct: 605  NVRVYLNLTVMEKTYNKRRGKETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLFSVL 664

Query: 2080 LRDYDAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPGKSLSXXXXXXXXXXXXXXXXL 2259
            LRDY+AHAAA+CMNRLAKLSARWIGNHGFSIGI DVQPG  L+                L
Sbjct: 665  LRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEGYENCHEL 724

Query: 2260 IEHYKTGKLELQPGCDAAQTLEAEITGILNNIREKAATVCMENLHWRNSPLIMSQCGSKG 2439
            I+ Y  GKL+LQPGC+AAQTLEAEITG+LN IRE  A VCME LHWRNSPLIMSQCGSKG
Sbjct: 725  IQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEELHWRNSPLIMSQCGSKG 784

Query: 2440 SPSNITQMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFVENSFYTGLTATEF 2619
            SP NI+QMIACVGQQSVGGRRA +GFIDR+LPHFPR S TPDAKGFV +SFYTGLTATEF
Sbjct: 785  SPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTATEF 844

Query: 2620 FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRSASGGVVQFLYGDDGM 2799
            FFHTMGGREGLVDTAVKTADTGYMSRRL+KALEDLSI YD TVR+A+G +VQFLYGDDGM
Sbjct: 845  FFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDDGM 904

Query: 2800 DPSRMEGKDGTPLNLDRLYMKVKATCPARGHSSLSPTEIFELVVARLSKHDMTPEGGCSD 2979
            DP+RMEGKDG PLN +RL++KVKATCPA  ++SLS  +I E  V RL +H+ + E GCSD
Sbjct: 905  DPARMEGKDGFPLNFNRLFLKVKATCPAGENASLSALQI-EETVKRLKEHNTSAE-GCSD 962

Query: 2980 AFKKSLLDEEGFMQNKEGGFLGKCITSLKNTRRDLQLDGEKRGSESL---EKVSANIAGI 3150
            AFK +L            GFL +C    KNTR  L L GE  G E+L   EK + NI+GI
Sbjct: 963  AFKTNL-----------SGFLEECKEKFKNTREALGLHGEHVGEENLDIQEKFAKNISGI 1011

Query: 3151 TLQQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXXPGTQMTLKTFHFAGVA 3309
            T +QLQVFL+TCISRY LKR                 PGTQMTLKTFHFAGVA
Sbjct: 1012 TSKQLQVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVA 1064



 Score =  423 bits (1088), Expect = e-115
 Identities = 223/319 (69%), Positives = 264/319 (82%)
 Frame = +3

Query: 3315 VPRIKEIINGAKNISTPIITATLECKNDAKSARLVQGCIEKTVLGEIAESMKIIFTSRQA 3494
            VPRIKEIINGAK ISTPIITA LEC N+ K+AR+V+G IE+T LG++A+S+KI+ TSR A
Sbjct: 1072 VPRIKEIINGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLA 1131

Query: 3495 CILVTLDIELIQRSQLKISAHSVQQSIWRHPKAKLKAQHVEVLNDRKLRIHAPVDDRTKI 3674
             I V LD+E IQ SQL I ++ V++SI R+ + KLK QH++VL+  KL +H P  DR+ I
Sbjct: 1132 LIAVALDMEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEVH-PQGDRSTI 1190

Query: 3675 HFELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVD 3854
            HFELH+LK++LP V+V GI TVERA+INK  D + K    +NLLVEGT L+ VMGT GV 
Sbjct: 1191 HFELHALKNLLPTVVVKGIETVERAVINK--DNKVK----YNLLVEGTGLQTVMGTEGVI 1244

Query: 3855 GCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVLG 4034
            G  TTSNHIIEVQ+TLGIEAARKCII+EI YTM  HGM+IDIRHMMLL DLMT +GEVLG
Sbjct: 1245 GRETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVLG 1304

Query: 4035 ITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKI 4214
            ITRFGIQKM +SVLMLASFEKTADHLFNASV+GRDDKIEGVSECIIMGIPMQ+GTGILK+
Sbjct: 1305 ITRFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKV 1364

Query: 4215 RQRLEHVPQLDYGPESIFS 4271
            RQRL+ VP+L YG + I S
Sbjct: 1365 RQRLQQVPELSYGLDPIIS 1383


>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
          Length = 1819

 Score = 1479 bits (3829), Expect = 0.0
 Identities = 734/1026 (71%), Positives = 852/1026 (83%), Gaps = 12/1026 (1%)
 Frame = +1

Query: 127  IQFTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQDRKPKKNALLDSRM 306
            IQFTK+PY+EDVGPRKI+SI+F++ S +EI KA+E+QV+   +YD +RKP +N LLD RM
Sbjct: 5    IQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLDPRM 64

Query: 307  GPANKFITCATCHGSLTDCPGHYGYFHLILPVFNVGYFNAILNVLKCVCKSCARILLSER 486
            GPANK  TCATC G+  DCPGH GY  L LPV+NVGY + I+++LKC+CKSC+R+LL E+
Sbjct: 65   GPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLLDEK 124

Query: 487  DRISYLKKMRNPKLEALQKTGLAKAILNKC-------KPKKCSRCGYINGVVKKSGTVMG 645
                YLKKMR+ K+EAL+K  L K I+ KC       K  KCSRCGY+NG+VKK+ +V+G
Sbjct: 125  ASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVSVLG 184

Query: 646  IVHDRSKLMDGVKEECEAAISKTKDSRTSFTVVYVLNPVRVLDLFRRILDQDCDLLYLSD 825
            I+HDRSK+ DG  EEC +AIS TK+S+ SF+VV +LNPV+VL LF+R++D+DCDLL L++
Sbjct: 185  IIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLLNLAE 244

Query: 826  RPEKLIITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTIIQANTSLRQDLHCTSPTSK 1005
            RPEKL++T+I VPPIAIRPS F+DGG  SNE+D+T +L  IIQAN SL Q+L  T  TSK
Sbjct: 245  RPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGSTSK 304

Query: 1006 CLAAWELLQVEVAQYINSDVRGVPLSMQSSKPLRGFIQRLKGKQGRFRGNLSGKRVEYTA 1185
            CLA W+ LQ+EVAQYINSDVRGVPL+MQ+++PL GF+QRLKGKQGRFRGNLSGKRVEYT 
Sbjct: 305  CLAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTG 364

Query: 1186 RTVISPDPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRKCVANGPQKYPGANFIRLAS 1365
            RTVISPDPNLKITEV IPIL+A++L+YPE VS +NIEKLR+C+ NGP KYPGA  IR   
Sbjct: 365  RTVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIRYPD 424

Query: 1366 GSLQNLRYGRRKGYADALKYGDTVERHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTL 1545
            GS+++L +  RK +AD LKYG  VERHLEDGDVVLFNRQPSLHRMSIM HRA+IMPWRTL
Sbjct: 425  GSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTL 484

Query: 1546 RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 1725
            RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL
Sbjct: 485  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 544

Query: 1726 TSSFLITRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNVLIRPHA 1905
            TSSFLITR+DTFYDRA+FSLMCSYMGD MD +DLPTPA+IK +ELWTGKQLFNVL+RPHA
Sbjct: 545  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKAMELWTGKQLFNVLLRPHA 604

Query: 1906 QMRVFVNLTVFEKSYNK--GRETLCPNDGFVYFRNSELICGQLGKATLGNGNKDGLFSVL 2079
             +RV++NLTV EK+YNK  G+ET+CP+DGFVYFRNSELI GQLGKATLGNGNKDGLFSVL
Sbjct: 605  NVRVYLNLTVMEKTYNKRRGKETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLFSVL 664

Query: 2080 LRDYDAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPGKSLSXXXXXXXXXXXXXXXXL 2259
            LRDY+AHAAA+CMNRLAKLSARWIGNHGFSIGI DVQPG  L+                L
Sbjct: 665  LRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEGYENCHEL 724

Query: 2260 IEHYKTGKLELQPGCDAAQTLEAEITGILNNIREKAATVCMENLHWRNSPLIMSQCGSKG 2439
            I+ Y  GKL+LQPGC+AAQTLEAEITG+LN IRE  A VCME LHWRNSPLIMSQCGSKG
Sbjct: 725  IQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEELHWRNSPLIMSQCGSKG 784

Query: 2440 SPSNITQMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFVENSFYTGLTATEF 2619
            SP NI+QMIACVGQQSVGGRRA +GFIDR+LPHFPR S TPDAKGFV +SFYTGLTATEF
Sbjct: 785  SPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYTGLTATEF 844

Query: 2620 FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRSASGGVVQFLYGDDGM 2799
            FFHTMGGREGLVDTAVKTADTGYMSRRL+KALEDLSI YD TVR+A+G +VQFLYGDDGM
Sbjct: 845  FFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQFLYGDDGM 904

Query: 2800 DPSRMEGKDGTPLNLDRLYMKVKATCPARGHSSLSPTEIFELVVARLSKHDMTPEGGCSD 2979
            DP+RMEGKDG PLN +RL++KVKATCPA  ++SLS  +I E  V RL +H+ + E GCSD
Sbjct: 905  DPARMEGKDGFPLNFNRLFLKVKATCPAGENASLSALQI-EETVKRLKEHNTSAE-GCSD 962

Query: 2980 AFKKSLLDEEGFMQNKEGGFLGKCITSLKNTRRDLQLDGEKRGSESL---EKVSANIAGI 3150
            AFK +L            GFL +C    KNTR  L L GE  G E+L   EK + NI+GI
Sbjct: 963  AFKTNL-----------SGFLEECKEKFKNTREALGLHGEHVGEENLDIQEKFAKNISGI 1011

Query: 3151 TLQQLQ 3168
            T +QLQ
Sbjct: 1012 TSKQLQ 1017



 Score =  423 bits (1088), Expect(2) = e-125
 Identities = 223/319 (69%), Positives = 264/319 (82%)
 Frame = +3

Query: 3315 VPRIKEIINGAKNISTPIITATLECKNDAKSARLVQGCIEKTVLGEIAESMKIIFTSRQA 3494
            VPRIKEIINGAK ISTPIITA LEC N+ K+AR+V+G IE+T LG++A+S+KI+ TSR A
Sbjct: 1508 VPRIKEIINGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLA 1567

Query: 3495 CILVTLDIELIQRSQLKISAHSVQQSIWRHPKAKLKAQHVEVLNDRKLRIHAPVDDRTKI 3674
             I V LD+E IQ SQL I ++ V++SI R+ + KLK QH++VL+  KL +H P  DR+ I
Sbjct: 1568 LIAVALDMEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEVH-PQGDRSTI 1626

Query: 3675 HFELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVD 3854
            HFELH+LK++LP V+V GI TVERA+INK  D + K    +NLLVEGT L+ VMGT GV 
Sbjct: 1627 HFELHALKNLLPTVVVKGIETVERAVINK--DNKVK----YNLLVEGTGLQTVMGTEGVI 1680

Query: 3855 GCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVLG 4034
            G  TTSNHIIEVQ+TLGIEAARKCII+EI YTM  HGM+IDIRHMMLL DLMT +GEVLG
Sbjct: 1681 GRETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVLG 1740

Query: 4035 ITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKI 4214
            ITRFGIQKM +SVLMLASFEKTADHLFNASV+GRDDKIEGVSECIIMGIPMQ+GTGILK+
Sbjct: 1741 ITRFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKV 1800

Query: 4215 RQRLEHVPQLDYGPESIFS 4271
            RQRL+ VP+L YG + I S
Sbjct: 1801 RQRLQQVPELSYGLDPIIS 1819



 Score = 57.0 bits (136), Expect(2) = e-125
 Identities = 29/51 (56%), Positives = 32/51 (62%)
 Frame = +1

Query: 3157 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXXPGTQMTLKTFHFAGVA 3309
            ++L VFL+TCISRY LKR                 PGTQMTLKTFHFAGVA
Sbjct: 1450 KRLGVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVA 1500


>ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao]
            gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase
            [Theobroma cacao]
          Length = 1395

 Score = 1432 bits (3707), Expect = 0.0
 Identities = 729/1078 (67%), Positives = 845/1078 (78%), Gaps = 18/1078 (1%)
 Frame = +1

Query: 130  QFTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQDRKPKKNALLDSRMG 309
            +FTK+PY+EDVGPRKIKSIQFSM+S +EI KA+E+QV+ + +YD   +P +  LLD RMG
Sbjct: 4    KFTKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKSRPIEGGLLDPRMG 63

Query: 310  PANKFITCATCHGSLTDCPGHYGYFHLILPVFNVGYFNAILNVLKCVCKSCARILLSERD 489
            PANK   CATCHG+  DCPGHYGY  L LPV+NVGY + IL++LKC+CKSC+RI+L E+ 
Sbjct: 64   PANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDEKL 123

Query: 490  RISYLKKMRNPKLEALQKTGLAKAILNKC------KPKKCSRCGYINGVVKKSGTVMGIV 651
               YLK+MR+PK++AL+K  + K+I+ KC      K  KC RCGY+NG VKK+  ++GI+
Sbjct: 124  CKDYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKAVKCWRCGYVNGTVKKAVAMLGII 183

Query: 652  HDRSKLMDGVKEECEAAISKTKDSRTSFTVV-YVLNPVRVLDLFRRILDQDCDLLYLSDR 828
            HDRSK+ D   EE  +AIS TK+S+ SF V  YVLNPV+VL LF+R+ D DC+LLYLSDR
Sbjct: 184  HDRSKINDNSLEEFRSAISHTKESKASFNVATYVLNPVKVLSLFKRMTDLDCELLYLSDR 243

Query: 829  PEKLIITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTIIQANTSLRQDLHCTSPTSKC 1008
            PEKLIIT+I VPPI IRPS  +DG + SNE+DIT +L  IIQAN SLRQ+L  T+   KC
Sbjct: 244  PEKLIITNIAVPPIPIRPSVIMDGSQ-SNENDITERLKRIIQANASLRQELVETNAAFKC 302

Query: 1009 LAAWELLQVEVAQYINSDVRGVPLSMQSSKPLRGFIQRLKGKQGRFRGNLSGKRVEYTAR 1188
            L  WE+LQVEVAQYINSDVRGVP SMQ SKPL GF+QR+KGK GRFRGNLSGKRVEYT R
Sbjct: 303  LGGWEMLQVEVAQYINSDVRGVPFSMQVSKPLSGFVQRIKGKHGRFRGNLSGKRVEYTGR 362

Query: 1189 TVISPDPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRKCVANGPQKYPGANFIRLASG 1368
            TVISPDPNLKITEV IPI +A++LTYPE VS +NIEKLR+CV NGP KYPGA  +R   G
Sbjct: 363  TVISPDPNLKITEVAIPIHMARILTYPERVSNHNIEKLRQCVRNGPSKYPGARMVRYPDG 422

Query: 1369 SLQNLRYGRRKGYADALKYGDTVERHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTLR 1548
            S + L    RK  AD LK+G  V+RHLEDGD+VLFNRQPSLHRMSIM HRA+IMPWRTLR
Sbjct: 423  SARLLIGDYRKRLADELKFGCVVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLR 482

Query: 1549 FNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 1728
            FNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT
Sbjct: 483  FNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 542

Query: 1729 SSFLITRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNVLIRPHAQ 1908
            SSFLITR+D FYDRA+FSL+CSYMGD MD IDLPTPAL+KP+ELWTGKQLF+VL+RPHA 
Sbjct: 543  SSFLITRKDIFYDRAAFSLICSYMGDGMDLIDLPTPALLKPIELWTGKQLFSVLLRPHAS 602

Query: 1909 MRVFVNLTVFEKSYNK-----------GRETLCPNDGFVYFRNSELICGQLGKATLGNGN 2055
            +RV++NL V E++Y+K             ET+CP+DGFVY RNSELICGQLGKATLGNGN
Sbjct: 603  VRVYLNLIVKERNYSKKIIKRIGNKEIEVETMCPDDGFVYIRNSELICGQLGKATLGNGN 662

Query: 2056 KDGLFSVLLRDYDAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPGKSLSXXXXXXXXX 2235
            KDGL+SVLLRDY+AHAAA+CMNRLAKLSARWIGNHGFSIGI DVQPGK L+         
Sbjct: 663  KDGLYSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGKRLNDEKALTISG 722

Query: 2236 XXXXXXXLIEHYKTGKLELQPGCDAAQTLEAEITGILNNIREKAATVCMENLHWRNSPLI 2415
                    I+ +  GKL+ +PG DAAQTLEA +T ILNNIR+K   VCM+ LHWRNSPLI
Sbjct: 723  DYKKCDEEIQTFNEGKLKPKPGYDAAQTLEANVTAILNNIRDKTGKVCMKELHWRNSPLI 782

Query: 2416 MSQCGSKGSPSNITQMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFVENSFY 2595
            MSQCGSKGS  NI+QMIACVGQQSVGGRRA NGFIDRSLPHF R S TP AKGFV NSFY
Sbjct: 783  MSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAKGFVANSFY 842

Query: 2596 TGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRSASGGVVQ 2775
            +GLTATEFFFHTM GREGLVDTAVKTA+TGYMSRRLIKALEDLSIHYDNTVR+ASG +VQ
Sbjct: 843  SGLTATEFFFHTMAGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTVRNASGCIVQ 902

Query: 2776 FLYGDDGMDPSRMEGKDGTPLNLDRLYMKVKATCPARGHSSLSPTEIFELVVARLSKHDM 2955
            F+YGDDGMDP+ MEGK G PLN DRL MKVKATCP      L    I +++  +L+KHD 
Sbjct: 903  FIYGDDGMDPACMEGKSGFPLNFDRLLMKVKATCPPIEQKCLHVGSIMQMLEEQLAKHD- 961

Query: 2956 TPEGGCSDAFKKSLLDEEGFMQNKEGGFLGKCITSLKNTRRDLQLDGEKRGSESLEKVSA 3135
             P G CS+AFKKSL   +GF++++    L + +  + N  +          SE LEKV  
Sbjct: 962  -PAGVCSEAFKKSL---KGFLKSQTNE-LDRVMKLVNNCAQK---------SEILEKVGH 1007

Query: 3136 NIAGITLQQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXXPGTQMTLKTFHFAGVA 3309
             I+GI+ +QL+VF+ TCISRY  K                  PGTQMTLKTFHFAGVA
Sbjct: 1008 KISGISDRQLEVFVSTCISRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 1065



 Score =  394 bits (1012), Expect = e-106
 Identities = 204/324 (62%), Positives = 262/324 (80%), Gaps = 5/324 (1%)
 Frame = +3

Query: 3315 VPRIKEIINGAKNISTPIITATLECKNDAKSARLVQGCIEKTVLGEIAESMKIIFTSRQA 3494
            VPRIKEIIN AK ISTP+ITA LE  ++   A++V+G IEKTVLG++A+S+KI+ TSR A
Sbjct: 1073 VPRIKEIINAAKRISTPVITAELEFDDNPNIAQIVKGRIEKTVLGQVAKSIKIVITSRSA 1132

Query: 3495 CILVTLDIELIQRSQLKISAHSVQQSIWRHPKAKLKAQHVEVLNDRKLRIHAPVDDRTKI 3674
             +++TLD+E+I  ++L I A+ V++SI + PK KLK QHV+VL+ RKL +  P D R++I
Sbjct: 1133 SVVITLDMEIILDAELYIDANIVKESILQTPKIKLKEQHVKVLDGRKLEVVPPAD-RSQI 1191

Query: 3675 HFELHSLKSMLPKVIVMGIPTVERAII----NKLKDKRGKETGEH-NLLVEGTNLRAVMG 3839
            HFELHSLK++LP V+V GI TVER ++     + K+++ +ET +H  LLVEGT L+AVMG
Sbjct: 1192 HFELHSLKNLLPLVVVKGIKTVERTVVYDKNKEKKNQKEEETTKHFQLLVEGTGLQAVMG 1251

Query: 3840 TLGVDGCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSK 4019
              G+DG  T SNH++E+++ LGIEAARKCIIDEI  TM+ HGMTID RHMMLL D+MT +
Sbjct: 1252 IEGIDGRRTWSNHVMEMEQILGIEAARKCIIDEIAQTMEHHGMTIDRRHMMLLADVMTFR 1311

Query: 4020 GEVLGITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGT 4199
            GEVLGITRFGIQKM +S+LMLASFE+TADHLFNA+VNGRDDKIEGV+ECIIMGIPMQIGT
Sbjct: 1312 GEVLGITRFGIQKMDKSILMLASFERTADHLFNAAVNGRDDKIEGVTECIIMGIPMQIGT 1371

Query: 4200 GILKIRQRLEHVPQLDYGPESIFS 4271
            GILK+ QR++  P L YGP+ + S
Sbjct: 1372 GILKVIQRVDPPPMLRYGPDPVLS 1395


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Cucumis
            sativus]
          Length = 1400

 Score = 1420 bits (3675), Expect = 0.0
 Identities = 717/1086 (66%), Positives = 836/1086 (76%), Gaps = 27/1086 (2%)
 Frame = +1

Query: 133  FTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQDRKPKKNALLDSRMGP 312
            FTKQPY+EDVGPRKIKS+QF+  SG EI K +E+QV+   +YD  RKP    LLD RMGP
Sbjct: 11   FTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDGGLLDPRMGP 70

Query: 313  ANKFITCATCHGSLTDCPGHYGYFHLILPVFNVGYFNAILNVLKCVCKSCARILLSERDR 492
            ANK   CATCH +  DCPGHYGY +L LPVFNVGYF  IL +LKC+CKSC+RILL E+  
Sbjct: 71   ANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCSRILLEEKLF 130

Query: 493  ISYLKKMRNPKLEALQKTGLAKAILNKC-------KPKKCSRCGYINGVVKKSGTVMGIV 651
              +L+KMRNPKLEAL+K  L K I+ KC       K  +CSRCGY+NG VKK+ +++GI+
Sbjct: 131  KDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGSVKKAVSMLGIL 190

Query: 652  HDRSKLMDG--VKEECEAAISKTKDSRTSFTVVYVLNPVRVLDLFRRILDQDCDLLYLSD 825
            H R++  D   V E+  A  + + D         +LNP RVL LF+R+ D+DC+LL+LS+
Sbjct: 191  HYRARSKDAGVVSEDLRAPYNVSND---------ILNPFRVLCLFQRMSDEDCELLFLSN 241

Query: 826  RPEKLIITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTIIQANTSLRQDLHCTSPTSK 1005
            RPEKLIIT++LVPPIAIRPS  +DG + SNE+DIT +L  IIQ N S+ Q+L  ++  +K
Sbjct: 242  RPEKLIITNVLVPPIAIRPSVIMDGSQ-SNENDITERLKRIIQQNASVSQELSTSNSQAK 300

Query: 1006 CLAAWELLQVEVAQYINSDVRGVPLSMQSSKPLRGFIQRLKGKQGRFRGNLSGKRVEYTA 1185
            CL +W++LQ EVAQ INSDVRG+P SMQ SKPL GF+QRLKGKQGRFRGNL GKRVE+T 
Sbjct: 301  CLESWDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTG 360

Query: 1186 RTVISPDPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRKCVANGPQKYPGANFIRLAS 1365
            RTVISPDPNLKITEV +PI +A++LTYPE V+++NIEKLR+CV+NGP KYPGA  +R   
Sbjct: 361  RTVISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDKYPGARMLRHLD 420

Query: 1366 GSLQNLRYGRRKGYADALKYGDTVERHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTL 1545
            GS+++L    RK  AD LKYG+ VERHLEDGDVVLFNRQPSLHRMSIM HR ++MPWRTL
Sbjct: 421  GSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRVRVMPWRTL 480

Query: 1546 RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 1725
            RFNESVCNPYNADFDGDEMNMHVPQTEEARTEA++LMGVQNNLCTPKNGEILVASTQDFL
Sbjct: 481  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFL 540

Query: 1726 TSSFLITRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNVLIRPHA 1905
            TSSFLITR+DTFYDRA+FSLMCSYMGD MD +DLPTPAL+KP+ELWTGKQLF+VL+RPHA
Sbjct: 541  TSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGKQLFSVLVRPHA 600

Query: 1906 QMRVFVNLTVFEKSYN------KGRETLCPNDGFVYFRNSELICGQLGKATLGNGNKDGL 2067
             M+V++NLTV EKSY+      K RET+CPNDGFVYFRNSELI GQ+GKATLGNGNKDGL
Sbjct: 601  SMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATLGNGNKDGL 660

Query: 2068 FSVLLRDYDAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPGKSLSXXXXXXXXXXXXX 2247
            +SVLLRDY AHAAA CMNRLAKLSARWIGNHGFSIGI DVQPG  L              
Sbjct: 661  YSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVKKKQTTILEGYRD 720

Query: 2248 XXXLIEHYKTGKLELQPGCDAAQTLEAEITGILNNIREKAATVCMENLHWRNSPLIMSQC 2427
                I  + TG L  + GCDAAQ+LE++IT ILN IRE  A VCM+NLHWRNSPLIMSQC
Sbjct: 721  CDKQINLFNTGNLPPEAGCDAAQSLESKITQILNGIREATANVCMQNLHWRNSPLIMSQC 780

Query: 2428 GSKGSPSNITQMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFVENSFYTGLT 2607
            GSKGSP NI+QM+ACVGQQSVGGRRA +GFIDRSLPHF R + TP AKGFV NSFY+GLT
Sbjct: 781  GSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAAKGFVANSFYSGLT 840

Query: 2608 ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRSASGGVVQFLYG 2787
            ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYD++VR+A G +VQF YG
Sbjct: 841  ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGGCIVQFCYG 900

Query: 2788 DDGMDPSRMEGKDGTPLNLDRLYMKVKATCPARGHSSLSPTEIFELVVARLSKHDMTPEG 2967
            DDGMDP++MEGK G PLN +RL++K KATCP+ G+  LSP+E  E V  RLSK D +PE 
Sbjct: 901  DDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSETVEDRLSKDDASPEC 960

Query: 2968 GCSDAFKKSLLDEEGFMQNKEGGFLGKCITSLKNTRRDLQLDGEKRGSESL--------- 3120
            GCS AF  SL             FL K + + K +   L  D E    +S+         
Sbjct: 961  GCSPAFVGSLKI-----------FLNKYVEAQKKSWGTLLADNESAVDKSIISSSDNDNI 1009

Query: 3121 ---EKVSANIAGITLQQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXXPGTQMTLKTF 3291
                KV  NIAG+T +QLQVFL+TC+SRYH K+                 PGTQMTLKTF
Sbjct: 1010 VIRNKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTF 1069

Query: 3292 HFAGVA 3309
            HFAGVA
Sbjct: 1070 HFAGVA 1075



 Score =  404 bits (1037), Expect = e-109
 Identities = 210/319 (65%), Positives = 255/319 (79%)
 Frame = +3

Query: 3315 VPRIKEIINGAKNISTPIITATLECKNDAKSARLVQGCIEKTVLGEIAESMKIIFTSRQA 3494
            VPRIKEIINGAK ISTPI+TA L   ++   AR+V+  IEKT LG+IA+ ++I+ +SR A
Sbjct: 1083 VPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQIAKCIQIVMSSRSA 1142

Query: 3495 CILVTLDIELIQRSQLKISAHSVQQSIWRHPKAKLKAQHVEVLNDRKLRIHAPVDDRTKI 3674
             I + LD+E I+ ++L + A+ V+Q+I   PK KLK +H+ VL+DRKLR+     DR K+
Sbjct: 1143 LIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRVLPQDADRNKL 1202

Query: 3675 HFELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVD 3854
            HF LH LK+MLP V+V GI TV RA+I + KDK  +   + +LLVEGT L+AVMGT GVD
Sbjct: 1203 HFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDK-ARNAKKFSLLVEGTGLQAVMGTEGVD 1261

Query: 3855 GCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVLG 4034
            GCNT SNHIIEVQ+ LGIEAARKCII+EI YTM+ HGM+IDIRHMMLLGDLMT +GEVLG
Sbjct: 1262 GCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDLMTFRGEVLG 1321

Query: 4035 ITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKI 4214
            ITRFGIQKM +SVLMLASFEKTADHLFNASVNGRDDKIEGVSEC+IMGIPM +GTG+LK+
Sbjct: 1322 ITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPMPLGTGMLKV 1381

Query: 4215 RQRLEHVPQLDYGPESIFS 4271
            RQR+    QL YGP +I S
Sbjct: 1382 RQRVSVPQQLPYGPPAILS 1400


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            rpc1-like isoform X2 [Citrus sinensis]
          Length = 1404

 Score = 1417 bits (3668), Expect = 0.0
 Identities = 730/1084 (67%), Positives = 842/1084 (77%), Gaps = 18/1084 (1%)
 Frame = +1

Query: 112  QTDAEIQFTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQDRKPKKNAL 291
            Q    I FTKQPY+EDVGPRKI+SIQFSMMS +EIMKA+E+QV+   +Y  +R P +  L
Sbjct: 7    QKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIEGGL 66

Query: 292  LDSRMGPANKFITCATCHGSLTDCPGHYGYFHLILPVFNVGYFNAILNVLKCVCKSCARI 471
            LD RMGPANK  TCATCHG  ++CPGHYGY  L LPV+NVGY + IL++LKC+CK C+R+
Sbjct: 67   LDPRMGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCICKYCSRL 126

Query: 472  LLSERDRISYLKKMRNPKLEALQKTGLAKAILNKC-----KPKKCSRCGYINGVVKKSGT 636
            LL E+    YLKKMRNPK+EAL+KT L K+I+ KC     K  KC RCGYING+VKK+  
Sbjct: 127  LLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAVA 186

Query: 637  VMGIVHDRSKLMDGVKEECEAAISKTKDSRTSFTVV-YVLNPVRVLDLFRRILDQDCDLL 813
            V+GI+HDRSK+ + + +E  +AI+ TK+S+ +  V  Y+LNPV VL LF+R+ D DC++L
Sbjct: 187  VLGIIHDRSKVTESL-QEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCEVL 245

Query: 814  YLSDRPEKLIITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTIIQANTSLRQDLHCTS 993
            YLS+RPEKLIIT+I VPPIAIRPS  +DG + SNE+DIT +L  IIQ N SL+Q+L   +
Sbjct: 246  YLSERPEKLIITNIAVPPIAIRPSVIMDGSQ-SNENDITERLKRIIQTNASLQQELVEAN 304

Query: 994  PTSKCLAAWELLQVEVAQYINSDVRGVPLSMQSSKPLRGFIQRLKGKQGRFRGNLSGKRV 1173
               K LA WE LQVEVAQYINSDVRGVP SMQ ++PL GF+QRLKGKQGRFRGNLSGKRV
Sbjct: 305  SAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKRV 364

Query: 1174 EYTARTVISPDPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRKCVANGPQKYPGANFI 1353
            EYT RTVISPDPNLKITEV IPI +A++LTYPE VS +NIEKLR+C+ NGP KYPGA  I
Sbjct: 365  EYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARMI 424

Query: 1354 RLASGSLQNLRYGR-RKGYADALKYGDTVERHLEDGDVVLFNRQPSLHRMSIMSHRAKIM 1530
            R   G+ + L YG+ R   A  LK G  V+RHLEDGDVVLFNRQPSLHRMSIM HRA+IM
Sbjct: 425  RYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIM 483

Query: 1531 PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVAS 1710
            PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAL+LMGVQNNLCTPKNGEILVAS
Sbjct: 484  PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAS 543

Query: 1711 TQDFLTSSFLITRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNVL 1890
            TQDFLTSSFLITR+DTFYDRA+FSLMC YMGD MD +DLPTPA++KPVELWTGKQLF+VL
Sbjct: 544  TQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVL 603

Query: 1891 IRPHAQMRVFVNLTVFEKSYNKGR-----------ETLCPNDGFVYFRNSELICGQLGKA 2037
            IRPHA MRV+VNLTV EK+Y+              ET+CPNDGFVYFRNSELI GQLGKA
Sbjct: 604  IRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKA 663

Query: 2038 TLGNGNKDGLFSVLLRDYDAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPGKSLSXXX 2217
            TLGNGNKDGL+SVLLRDY AHA + CMNRLAKLSARWIGNHGFSIGI DVQP K LS   
Sbjct: 664  TLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKK 723

Query: 2218 XXXXXXXXXXXXXLIEHYKTGKLELQPGCDAAQTLEAEITGILNNIREKAATVCMENLHW 2397
                          I+ Y  GKL+L+PGCDAAQTLEA IT ILN IRE A   CM +L W
Sbjct: 724  GKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW 783

Query: 2398 RNSPLIMSQCGSKGSPSNITQMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGF 2577
            RNSPLIMSQCGSKGSP NI+QM+ACVGQQSVGGRRA NGFIDRSLPHFPR +  P AKGF
Sbjct: 784  RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGF 843

Query: 2578 VENSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRSA 2757
            V NSFY+GL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSI YDN+VR+A
Sbjct: 844  VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 903

Query: 2758 SGGVVQFLYGDDGMDPSRMEGKDGTPLNLDRLYMKVKATCPARGHSSLSPTEIFELVVAR 2937
             G +VQFLYGDDGMDP+ MEGK G PLN DRL MKVKATCP  G   LSP ++ E+V  +
Sbjct: 904  GGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQ 963

Query: 2938 LSKHDMTPEGGCSDAFKKSLLDEEGFMQNKEGGFLGKCITSLKNTRRDLQLDGEKRGSES 3117
            L+ +    +  CS+AF  SL       Q+K    L K I  ++    D+  D +   S+ 
Sbjct: 964  LAAYG---KESCSEAFLNSLRKFFEGQQDK----LDKKIKFVE----DIGWDDK---SQI 1009

Query: 3118 LEKVSANIAGITLQQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXXPGTQMTLKTFHF 3297
            LE+V+   +GIT +QL+VF++TC SRYH+KR                 PGTQMTLKTFHF
Sbjct: 1010 LEEVTHKTSGITEKQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHF 1069

Query: 3298 AGVA 3309
            AGVA
Sbjct: 1070 AGVA 1073



 Score =  409 bits (1052), Expect = e-111
 Identities = 224/325 (68%), Positives = 263/325 (80%), Gaps = 6/325 (1%)
 Frame = +3

Query: 3315 VPRIKEIINGAKNISTPIITATLECKNDAKSARLVQGCIEKTVLGEIAESMKIIFTSRQA 3494
            VPRIKEIINGAK ISTPIITA LEC ++  +AR+V+G IEKT+LG++A+S+KI+ TSR A
Sbjct: 1081 VPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLA 1140

Query: 3495 CILVTLDIELIQRSQLKISAHSVQQSIWRHPKAKLKAQHVEVLNDRKLRIHAPVDDRTKI 3674
             I++ LD+E IQ + L I+A  V++SI + PK KLK QH++VL+ RKL I  PVD ++KI
Sbjct: 1141 SIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKI 1199

Query: 3675 HFELHSLKSMLPKVIVMGIPTVERAII-NKLKDKRG-KETGE---HNLLVEGTNLRAVMG 3839
            HFEL+SLK++LP VIV GI TVER +I  K K+KR  KE GE   + LLVEGT L+AVMG
Sbjct: 1200 HFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMG 1259

Query: 3840 TLGVDGCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSK 4019
              G+DGC T SNHI EVQ+TLGIEAAR CIIDEIN TMK HGM+ID RHMMLL DLMT +
Sbjct: 1260 AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFR 1319

Query: 4020 GEVLGITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGT 4199
            GEVLGITRFGIQKM +SVLMLASFEKTADHLFNASVNGRDD+IEGVSECIIMGIPM +GT
Sbjct: 1320 GEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1379

Query: 4200 GILKIRQRLEHVPQLDYG-PESIFS 4271
            GILKIRQR    P L YG P+ I S
Sbjct: 1380 GILKIRQRDAVPPMLKYGAPDPIMS 1404


>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X2 [Solanum tuberosum]
          Length = 1243

 Score = 1407 bits (3641), Expect = 0.0
 Identities = 715/1074 (66%), Positives = 840/1074 (78%), Gaps = 13/1074 (1%)
 Frame = +1

Query: 127  IQFTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQDRKPKKNALLDSRM 306
            +Q TKQPY+EDVGPRKIKSI+FS+ S +EI+K++E++V+   +Y+  +KP +N LLD RM
Sbjct: 8    LQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQNGLLDPRM 67

Query: 307  GPANKFITCATCHGSLTDCPGHYGYFHLILPVFNVGYFNAILNVLKCVCKSCARILLSER 486
            GP NK   C TCHG+  +CPGHYGY  L LPV+NVGY   ++++LKC+CK C+ ILL ++
Sbjct: 68   GPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCSSILLDDK 127

Query: 487  DRISYLKKMRNPKLEALQKTGLAKAILNKC-------KPKKCSRCGYINGVVKKSGTVMG 645
            +R   LKKMRNP+ E L+K+ L K ++ +C       K   CS+CGY+NG+VKK    + 
Sbjct: 128  ERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVKK--LQLK 185

Query: 646  IVHDRSKLMDGVKEECEAAISKTKDSRTSFTVVYVLNPVRVLDLFRRILDQDCDLLYLSD 825
            I H++    + + +E   AIS  ++ R S +V   L+P  V  LF+ + D+DC+LLYLSD
Sbjct: 186  ITHEQG---NRILDEINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDEDCELLYLSD 242

Query: 826  RPEKLIITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTIIQANTSLRQDLHCTSPTSK 1005
            RPEKL++T I VPPIAIRPS FVDGG  SNE+DIT +L  IIQAN SL Q++  +SP  K
Sbjct: 243  RPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSSPV-K 301

Query: 1006 CLAAWELLQVEVAQYINSDVRGVPLSMQSSKPLRGFIQRLKGKQGRFRGNLSGKRVEYTA 1185
             L  W  LQ+EVAQYINSDVRGVPL MQ+ +PL GF QRLKGKQGRFRGNLSGKRVEYT 
Sbjct: 302  SLNLWIDLQMEVAQYINSDVRGVPLHMQAQRPLSGFTQRLKGKQGRFRGNLSGKRVEYTG 361

Query: 1186 RTVISPDPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRKCVANGPQKYPGANFIRLAS 1365
            RTVISPDPNLKITEV IPIL+AQ+LTYPE VSQ+NIEKLR+CV NGP KYPGA FIR   
Sbjct: 362  RTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRHPD 421

Query: 1366 GSLQNLRYGRRKGYADALKYGDTVERHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTL 1545
            GS  +L +  RK +AD LK+G  V+RHLEDGD+VLFNRQPSLHRMSIMSHRA+IMPWRTL
Sbjct: 422  GSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 481

Query: 1546 RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 1725
            RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPK+GEILVASTQDFL
Sbjct: 482  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDFL 541

Query: 1726 TSSFLITRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNVLIRPHA 1905
            TSSFLITR+DTFY+RASFSL+CSYMGDAMD  DLP+PA IKPVELWTGKQLF++L+RP++
Sbjct: 542  TSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHMLLRPYS 601

Query: 1906 QMRVFVNLTVFEKSYNKGRETLCPNDGFVYFRNSELICGQLGKATLGNGNKDGLFSVLLR 2085
            +MRV+VNLTV EKSY+   ET+CP+DGFVYFRNSELI GQLGKATLGNGNKDGL+SVLLR
Sbjct: 602  KMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLR 661

Query: 2086 DYDAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPGKSLSXXXXXXXXXXXXXXXXLIE 2265
            DY +HAAA+CMNRLAKLSARWIGNHGFSIGI DV PG++L                  I 
Sbjct: 662  DYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDCIT 721

Query: 2266 HYKTGKLELQPGCDAAQTLEAEITGILNNIREKAATVCMENLHWRNSPLIMSQCGSKGSP 2445
             +  GKL +QPGCDAAQTLEAE+T  LN +R+    +CM+ L WRNSPLIMSQCGSKGSP
Sbjct: 722  QFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKGSP 781

Query: 2446 SNITQMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFVENSFYTGLTATEFFF 2625
             NI+QMIACVGQQSVGGRRA +GFIDRSLPHFP  S  P AKGFV +SF+ GL+ATEFFF
Sbjct: 782  INISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEFFF 841

Query: 2626 HTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRSASGGVVQFLYGDDGMDP 2805
            HTMGGREGLVDTAVKTADTGYMSRRL+KALEDL+++YD+TVR+AS  +VQF+YGDDGMDP
Sbjct: 842  HTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGMDP 901

Query: 2806 SRMEGKDGTPLNLDRLYMKVKATCPARGHSSLSPTEIFELVVARLSKHDMTPEGGCSDAF 2985
            S+ME K G PLN  RL+MKVKATCP  G  SLS +EI E+V  RLS HDMTPEGGCS+AF
Sbjct: 902  SQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMTPEGGCSEAF 961

Query: 2986 KKSLLDEEGFMQNKEGGFLGKCIT-SLKNTRRDL-----QLDGEKRGSESLEKVSANIAG 3147
            + SL D           FL K +  +LKN R  L     Q +G+ RG   LEK++ NI+G
Sbjct: 962  RSSLSD-----------FLIKNLAETLKNLRESLLLGEEQYEGDDRG--YLEKIALNISG 1008

Query: 3148 ITLQQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXXPGTQMTLKTFHFAGVA 3309
            IT +QLQVFL TCISRYHLKR                 PGTQMTLKTFHFAGVA
Sbjct: 1009 ITKRQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 1062



 Score =  157 bits (396), Expect = 5e-35
 Identities = 88/170 (51%), Positives = 121/170 (71%), Gaps = 3/170 (1%)
 Frame = +3

Query: 3315 VPRIKEIINGAKNISTPIITATLECKNDAKSARLVQGCIEKTVLGEIAESMKIIFTSRQA 3494
            VPRIKEIIN AK I+TPIIT  L    +  +AR+++  IEKT+LG++A+S+KI+  SR A
Sbjct: 1070 VPRIKEIINAAKKITTPIITTKLLSAANLTAARMIKARIEKTLLGQVAKSVKIVLASRLA 1129

Query: 3495 CILVTLDIELIQRSQLKISAHSVQQSIWRHPKAKLKAQHVEVLNDRKLRIHAPVDDRTKI 3674
             I ++LD+E IQ SQL I A++V+QSI +  K KLK   ++VLN RKL +  P  ++ K+
Sbjct: 1130 SIAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVF-PQANKDKL 1188

Query: 3675 HFELHSLKSMLPKVIVMGIPTVERAIINK--LKDKRGKETGE-HNLLVEG 3815
            HFELH LK+ LP V+V GI TV+RA++NK   KD++    GE + LLVEG
Sbjct: 1189 HFELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEG 1238


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Solanum tuberosum]
          Length = 1394

 Score = 1407 bits (3641), Expect = 0.0
 Identities = 715/1074 (66%), Positives = 840/1074 (78%), Gaps = 13/1074 (1%)
 Frame = +1

Query: 127  IQFTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQDRKPKKNALLDSRM 306
            +Q TKQPY+EDVGPRKIKSI+FS+ S +EI+K++E++V+   +Y+  +KP +N LLD RM
Sbjct: 8    LQVTKQPYIEDVGPRKIKSIKFSLFSESEILKSAEVEVYLGLYYESTKKPIQNGLLDPRM 67

Query: 307  GPANKFITCATCHGSLTDCPGHYGYFHLILPVFNVGYFNAILNVLKCVCKSCARILLSER 486
            GP NK   C TCHG+  +CPGHYGY  L LPV+NVGY   ++++LKC+CK C+ ILL ++
Sbjct: 68   GPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCSSILLDDK 127

Query: 487  DRISYLKKMRNPKLEALQKTGLAKAILNKC-------KPKKCSRCGYINGVVKKSGTVMG 645
            +R   LKKMRNP+ E L+K+ L K ++ +C       K   CS+CGY+NG+VKK    + 
Sbjct: 128  ERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCSKCGYMNGMVKK--LQLK 185

Query: 646  IVHDRSKLMDGVKEECEAAISKTKDSRTSFTVVYVLNPVRVLDLFRRILDQDCDLLYLSD 825
            I H++    + + +E   AIS  ++ R S +V   L+P  V  LF+ + D+DC+LLYLSD
Sbjct: 186  ITHEQG---NRILDEINVAISDKRELRASVSVPPELDPKVVYSLFKNMSDEDCELLYLSD 242

Query: 826  RPEKLIITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTIIQANTSLRQDLHCTSPTSK 1005
            RPEKL++T I VPPIAIRPS FVDGG  SNE+DIT +L  IIQAN SL Q++  +SP  K
Sbjct: 243  RPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSSPV-K 301

Query: 1006 CLAAWELLQVEVAQYINSDVRGVPLSMQSSKPLRGFIQRLKGKQGRFRGNLSGKRVEYTA 1185
             L  W  LQ+EVAQYINSDVRGVPL MQ+ +PL GF QRLKGKQGRFRGNLSGKRVEYT 
Sbjct: 302  SLNLWIDLQMEVAQYINSDVRGVPLHMQAQRPLSGFTQRLKGKQGRFRGNLSGKRVEYTG 361

Query: 1186 RTVISPDPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRKCVANGPQKYPGANFIRLAS 1365
            RTVISPDPNLKITEV IPIL+AQ+LTYPE VSQ+NIEKLR+CV NGP KYPGA FIR   
Sbjct: 362  RTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRHPD 421

Query: 1366 GSLQNLRYGRRKGYADALKYGDTVERHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTL 1545
            GS  +L +  RK +AD LK+G  V+RHLEDGD+VLFNRQPSLHRMSIMSHRA+IMPWRTL
Sbjct: 422  GSEISLMFTSRKRHADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 481

Query: 1546 RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 1725
            RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPK+GEILVASTQDFL
Sbjct: 482  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDFL 541

Query: 1726 TSSFLITRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNVLIRPHA 1905
            TSSFLITR+DTFY+RASFSL+CSYMGDAMD  DLP+PA IKPVELWTGKQLF++L+RP++
Sbjct: 542  TSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHMLLRPYS 601

Query: 1906 QMRVFVNLTVFEKSYNKGRETLCPNDGFVYFRNSELICGQLGKATLGNGNKDGLFSVLLR 2085
            +MRV+VNLTV EKSY+   ET+CP+DGFVYFRNSELI GQLGKATLGNGNKDGL+SVLLR
Sbjct: 602  KMRVYVNLTVTEKSYSGKGETMCPSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLR 661

Query: 2086 DYDAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPGKSLSXXXXXXXXXXXXXXXXLIE 2265
            DY +HAAA+CMNRLAKLSARWIGNHGFSIGI DV PG++L                  I 
Sbjct: 662  DYKSHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDCIT 721

Query: 2266 HYKTGKLELQPGCDAAQTLEAEITGILNNIREKAATVCMENLHWRNSPLIMSQCGSKGSP 2445
             +  GKL +QPGCDAAQTLEAE+T  LN +R+    +CM+ L WRNSPLIMSQCGSKGSP
Sbjct: 722  QFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKGSP 781

Query: 2446 SNITQMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFVENSFYTGLTATEFFF 2625
             NI+QMIACVGQQSVGGRRA +GFIDRSLPHFP  S  P AKGFV +SF+ GL+ATEFFF
Sbjct: 782  INISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEFFF 841

Query: 2626 HTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRSASGGVVQFLYGDDGMDP 2805
            HTMGGREGLVDTAVKTADTGYMSRRL+KALEDL+++YD+TVR+AS  +VQF+YGDDGMDP
Sbjct: 842  HTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGMDP 901

Query: 2806 SRMEGKDGTPLNLDRLYMKVKATCPARGHSSLSPTEIFELVVARLSKHDMTPEGGCSDAF 2985
            S+ME K G PLN  RL+MKVKATCP  G  SLS +EI E+V  RLS HDMTPEGGCS+AF
Sbjct: 902  SQMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMTPEGGCSEAF 961

Query: 2986 KKSLLDEEGFMQNKEGGFLGKCIT-SLKNTRRDL-----QLDGEKRGSESLEKVSANIAG 3147
            + SL D           FL K +  +LKN R  L     Q +G+ RG   LEK++ NI+G
Sbjct: 962  RSSLSD-----------FLIKNLAETLKNLRESLLLGEEQYEGDDRG--YLEKIALNISG 1008

Query: 3148 ITLQQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXXPGTQMTLKTFHFAGVA 3309
            IT +QLQVFL TCISRYHLKR                 PGTQMTLKTFHFAGVA
Sbjct: 1009 ITKRQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 1062



 Score =  380 bits (975), Expect = e-102
 Identities = 205/320 (64%), Positives = 249/320 (77%), Gaps = 3/320 (0%)
 Frame = +3

Query: 3315 VPRIKEIINGAKNISTPIITATLECKNDAKSARLVQGCIEKTVLGEIAESMKIIFTSRQA 3494
            VPRIKEIIN AK I+TPIIT  L    +  +AR+++  IEKT+LG++A+S+KI+  SR A
Sbjct: 1070 VPRIKEIINAAKKITTPIITTKLLSAANLTAARMIKARIEKTLLGQVAKSVKIVLASRLA 1129

Query: 3495 CILVTLDIELIQRSQLKISAHSVQQSIWRHPKAKLKAQHVEVLNDRKLRIHAPVDDRTKI 3674
             I ++LD+E IQ SQL I A++V+QSI +  K KLK   ++VLN RKL +  P  ++ K+
Sbjct: 1130 SIAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVF-PQANKDKL 1188

Query: 3675 HFELHSLKSMLPKVIVMGIPTVERAIINK--LKDKRGKETGE-HNLLVEGTNLRAVMGTL 3845
            HFELH LK+ LP V+V GI TV+RA++NK   KD++    GE + LLVEGT L AVMG  
Sbjct: 1189 HFELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAVMGIE 1248

Query: 3846 GVDGCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGE 4025
            GVDG  T SNHI+EVQ TLGIEAAR  IIDEINYTM  HGMTID+RHMMLL DLMT KGE
Sbjct: 1249 GVDGRYTKSNHIMEVQNTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGE 1308

Query: 4026 VLGITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGI 4205
            VLGITR G+QKMK+SVLMLASFEKT DHLFNASVNGRDDKIEGV+ECIIMGIPM IGTG+
Sbjct: 1309 VLGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTIGTGM 1368

Query: 4206 LKIRQRLEHVPQLDYGPESI 4265
             K+RQR+E V +L+Y P+ I
Sbjct: 1369 FKLRQRVEQV-ELNYQPDPI 1387


>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Solanum
            lycopersicum]
          Length = 1390

 Score = 1406 bits (3640), Expect = 0.0
 Identities = 714/1074 (66%), Positives = 837/1074 (77%), Gaps = 13/1074 (1%)
 Frame = +1

Query: 127  IQFTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQDRKPKKNALLDSRM 306
            +Q TKQPY+EDVGPRKIKSI+FS+ S +EI+K +E++V+   +Y+  +KP +N LLD RM
Sbjct: 8    LQVTKQPYIEDVGPRKIKSIKFSLFSESEILKLAEVEVYLGLYYESTKKPIQNGLLDPRM 67

Query: 307  GPANKFITCATCHGSLTDCPGHYGYFHLILPVFNVGYFNAILNVLKCVCKSCARILLSER 486
            GP NK   C TCHG+  +CPGHYGY  L LPV+NVGY   ++++LKC+CK C+ ILL ++
Sbjct: 68   GPPNKSGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVDILKCICKCCSSILLDDK 127

Query: 487  DRISYLKKMRNPKLEALQKTGLAKAILNKC-------KPKKCSRCGYINGVVKKSGTVMG 645
            +R   LKKMRNP+ E L+K+ L K ++ +C       K   CS+CGY+NG+VKK    + 
Sbjct: 128  ERRDILKKMRNPRTEFLKKSELHKRVVKRCNAMAGGQKTATCSKCGYMNGMVKK--LQLK 185

Query: 646  IVHDRSKLMDGVKEECEAAISKTKDSRTSFTVVYVLNPVRVLDLFRRILDQDCDLLYLSD 825
            I H++    + + +E   AIS  ++ R S +V   ++P  V  LF+ + D+DC+LLYLSD
Sbjct: 186  ITHEQG---NRILDEINVAISDKRELRASVSVPPEIDPKVVYSLFKNMSDEDCELLYLSD 242

Query: 826  RPEKLIITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTIIQANTSLRQDLHCTSPTSK 1005
            RPEKL++T I VPPIAIRPS FVDGG  SNE+DIT +L  IIQAN SL Q++  +SP  K
Sbjct: 243  RPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLHQEMSDSSPV-K 301

Query: 1006 CLAAWELLQVEVAQYINSDVRGVPLSMQSSKPLRGFIQRLKGKQGRFRGNLSGKRVEYTA 1185
             L  W  LQ+EVAQYINSDVRGVPL MQ  +PL GF QRLKGKQGRFRGNLSGKRVEYT 
Sbjct: 302  SLNQWIDLQMEVAQYINSDVRGVPLQMQPPRPLSGFTQRLKGKQGRFRGNLSGKRVEYTG 361

Query: 1186 RTVISPDPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRKCVANGPQKYPGANFIRLAS 1365
            RTVISPDPNLKITEV IPIL+AQ+LTYPE VSQ+NIEKLR+CV NGP KYPGA FIR   
Sbjct: 362  RTVISPDPNLKITEVAIPILMAQILTYPERVSQHNIEKLRQCVRNGPNKYPGAKFIRHPD 421

Query: 1366 GSLQNLRYGRRKGYADALKYGDTVERHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTL 1545
            G+  +L +  RK YAD LK+G  V+RHLEDGD+VLFNRQPSLHRMSIMSHRA+IMPWRTL
Sbjct: 422  GNEMSLMFSSRKRYADELKFGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTL 481

Query: 1546 RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFL 1725
            RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPK+GEILVASTQDFL
Sbjct: 482  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKSGEILVASTQDFL 541

Query: 1726 TSSFLITRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNVLIRPHA 1905
            TSSFLITR+DTFY+RASFSL+CSYMGDAMD  DLP+PA IKPVELWTGKQLF+VL+RP++
Sbjct: 542  TSSFLITRKDTFYNRASFSLICSYMGDAMDPTDLPSPAFIKPVELWTGKQLFHVLLRPYS 601

Query: 1906 QMRVFVNLTVFEKSYNKGRETLCPNDGFVYFRNSELICGQLGKATLGNGNKDGLFSVLLR 2085
            +MRV+VNLT+ EKSY+   ET+C +DGFVYFRNSELI GQLGKATLGNGNKDGL+SVLLR
Sbjct: 602  KMRVYVNLTLTEKSYSGKGETMCSSDGFVYFRNSELISGQLGKATLGNGNKDGLYSVLLR 661

Query: 2086 DYDAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPGKSLSXXXXXXXXXXXXXXXXLIE 2265
            DY++HAAA+CMNRLAKLSARWIGNHGFSIGI DV PG++L                  I 
Sbjct: 662  DYESHAAATCMNRLAKLSARWIGNHGFSIGIDDVTPGENLVKQKQGEIHRNYKKCEDCIT 721

Query: 2266 HYKTGKLELQPGCDAAQTLEAEITGILNNIREKAATVCMENLHWRNSPLIMSQCGSKGSP 2445
             +  GKL +QPGCDAAQTLEAE+T  LN +R+    +CM+ L WRNSPLIMSQCGSKGSP
Sbjct: 722  QFNEGKLAVQPGCDAAQTLEAEVTMSLNKVRDDIGKICMKALDWRNSPLIMSQCGSKGSP 781

Query: 2446 SNITQMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFVENSFYTGLTATEFFF 2625
             NI+QMIACVGQQSVGGRRA +GFIDRSLPHFP  S  P AKGFV +SF+ GL+ATEFFF
Sbjct: 782  INISQMIACVGQQSVGGRRAPDGFIDRSLPHFPFKSKFPAAKGFVAHSFFDGLSATEFFF 841

Query: 2626 HTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRSASGGVVQFLYGDDGMDP 2805
            HTMGGREGLVDTAVKTADTGYMSRRL+KALEDL+++YD+TVR+AS  +VQF+YGDDGMDP
Sbjct: 842  HTMGGREGLVDTAVKTADTGYMSRRLMKALEDLAVYYDSTVRNASACIVQFMYGDDGMDP 901

Query: 2806 SRMEGKDGTPLNLDRLYMKVKATCPARGHSSLSPTEIFELVVARLSKHDMTPEGGCSDAF 2985
            SRME K G PLN  RL+MKVKATCP  G  SLS +EI E+V  RLS HDMTPEGGCS+AF
Sbjct: 902  SRMEEKKGRPLNFSRLFMKVKATCPPGGEKSLSYSEICEIVNERLSYHDMTPEGGCSEAF 961

Query: 2986 KKSLLDEEGFMQNKEGGFLGKCIT-SLKNTRRDL-----QLDGEKRGSESLEKVSANIAG 3147
            + SL D           FL K +  +LKN R  L     Q +G+ RG   LEK+  NI+G
Sbjct: 962  RASLSD-----------FLIKSLAETLKNLRESLLLGEEQYEGDDRG--YLEKIVLNISG 1008

Query: 3148 ITLQQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXXPGTQMTLKTFHFAGVA 3309
            IT +QLQVFL TCISRYHLKR                 PGTQMTLKTFHFAGVA
Sbjct: 1009 ITKKQLQVFLNTCISRYHLKRLEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 1062



 Score =  384 bits (986), Expect = e-103
 Identities = 206/318 (64%), Positives = 250/318 (78%), Gaps = 3/318 (0%)
 Frame = +3

Query: 3315 VPRIKEIINGAKNISTPIITATLECKNDAKSARLVQGCIEKTVLGEIAESMKIIFTSRQA 3494
            VPRIKEIIN AK I+TPIITA L    +  +AR+++  IEKT+LG++A+S+KI+  SR A
Sbjct: 1070 VPRIKEIINAAKKITTPIITAKLLSAGNLTAARMIKARIEKTLLGQVAKSVKIVLASRLA 1129

Query: 3495 CILVTLDIELIQRSQLKISAHSVQQSIWRHPKAKLKAQHVEVLNDRKLRIHAPVDDRTKI 3674
             I ++LD+E IQ SQL I A++V+QSI +  K KLK   ++VLN RKL +  P  ++ K+
Sbjct: 1130 SIAISLDMETIQVSQLCIDAYTVKQSILQTSKIKLKEHQIKVLNPRKLEVF-PQANKDKL 1188

Query: 3675 HFELHSLKSMLPKVIVMGIPTVERAIINK--LKDKRGKETGE-HNLLVEGTNLRAVMGTL 3845
            HFELH LK+ LP V+V GI TV+RA++NK   KD++    GE + LLVEGT L AVMG  
Sbjct: 1189 HFELHRLKNKLPAVVVKGITTVQRAVVNKEQQKDRKNDVKGETYELLVEGTGLLAVMGIE 1248

Query: 3846 GVDGCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGE 4025
            GVDG  T SNHI+EVQ TLGIEAAR  IIDEINYTM  HGMTID+RHMMLL DLMT KGE
Sbjct: 1249 GVDGRYTKSNHIMEVQHTLGIEAARVSIIDEINYTMSSHGMTIDLRHMMLLADLMTYKGE 1308

Query: 4026 VLGITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGI 4205
            VLGITR G+QKMK+SVLMLASFEKT DHLFNASVNGRDDKIEGV+ECIIMGIPM IGTG+
Sbjct: 1309 VLGITRHGVQKMKDSVLMLASFEKTTDHLFNASVNGRDDKIEGVTECIIMGIPMTIGTGM 1368

Query: 4206 LKIRQRLEHVPQLDYGPE 4259
             K+RQR+EHV +L+Y P+
Sbjct: 1369 FKLRQRVEHV-ELNYQPD 1385


>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
            gi|548832896|gb|ERM95665.1| hypothetical protein
            AMTR_s00023p00196820 [Amborella trichopoda]
          Length = 1383

 Score = 1399 bits (3621), Expect = 0.0
 Identities = 709/1065 (66%), Positives = 830/1065 (77%), Gaps = 6/1065 (0%)
 Frame = +1

Query: 133  FTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQ-DRKPKKNALLDSRMG 309
            FTK+P+VED+GPRKIKS+QF M+SG EI+KA+E QV+   +Y++ D KP ++ +LD+RMG
Sbjct: 10   FTKKPFVEDIGPRKIKSVQFCMLSGPEIVKAAETQVYKRDYYNRTDLKPAEHGVLDTRMG 69

Query: 310  PANKFITCATCHGSLTDCPGHYGYFHLILPVFNVGYFNAILNVLKCVCKSCARILLSERD 489
             + K  +CATC G    CPGH+GY  L LPVF+VGYF   + VL+C+CKSCARILL E +
Sbjct: 70   FSTKSGSCATCFGDFQTCPGHFGYLKLALPVFHVGYFRTTIIVLQCICKSCARILLFEEE 129

Query: 490  RISYLKKMRNPKLEALQKTGLAKAILNKCKPKK-CSRCGYINGVVKKSGTVMGIVHDRSK 666
            R  +LKK+RNP+ E  QK    K +++KCK  + C RCG  NGVVKK+G    I HDRSK
Sbjct: 130  RKQFLKKIRNPRAELHQKNDFVKKVIDKCKRVRICPRCGDYNGVVKKAGPTFRISHDRSK 189

Query: 667  L-MDGVKEECEAAISKTKDSRTSFTVVYVLNPVRVLDLFRRILDQDCDLLYLSDRPEKLI 843
               D + +EC+ AIS+TK S + F +V  L P R L LF R++D+DCDLLYL DRPEKLI
Sbjct: 190  ANYDKLTKECKTAISQTKYSNSDFNMVENLTPQRALALFERMVDEDCDLLYLYDRPEKLI 249

Query: 844  ITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTIIQANTSLRQDLHCTSPTSKCLAAWE 1023
            IT I VPP  IRP+     G   NE+++T+KL  I+Q N +L   ++  +     +  W 
Sbjct: 250  ITHIAVPPAGIRPT--YQSGSRLNENELTTKLWEIVQINHTLIDHVNKGNLPQYYMDTWV 307

Query: 1024 LLQVEVAQYINSDVRGVPLSMQSSKPLRGFIQRLKGKQGRFRGNLSGKRVEYTARTVISP 1203
            LLQV VA YINS++  +PL+ Q SK   G +QRLKGKQGRFR NL GKRV++T RTVISP
Sbjct: 308  LLQVRVALYINSELPSLPLNYQPSKFEGGLVQRLKGKQGRFRSNLEGKRVDFTGRTVISP 367

Query: 1204 DPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRKCVANGPQKYPGANFIRLASGSLQNL 1383
            DPNLKITEV IP L+AQ+LTY E V+ +NIEKLR+CV NGP KYPGANF+ ++ G   +L
Sbjct: 368  DPNLKITEVAIPRLMAQILTYKERVTIHNIEKLRQCVRNGPVKYPGANFV-ISGGDTLSL 426

Query: 1384 RYGRRKGYADALKYGDTVERHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNESV 1563
            RYG +K  AD LK+GD VERHLEDG++VLFNRQPSLHRMSIM HRA++MPWRTLRFNESV
Sbjct: 427  RYGNKKRKADELKFGDFVERHLEDGEIVLFNRQPSLHRMSIMCHRARVMPWRTLRFNESV 486

Query: 1564 CNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSFLI 1743
            CNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQ+NLCTPKNGEILVASTQDFLTSS+LI
Sbjct: 487  CNPYNADFDGDEMNIHVPQTEEARTEALMLMGVQHNLCTPKNGEILVASTQDFLTSSYLI 546

Query: 1744 TRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNVLIRPHAQMRVFV 1923
            TR+DTFYDRA+FSLMCSYMGD M+ IDLPTPAL+KPVELWTGKQLF+VLIRPHA M+V+V
Sbjct: 547  TRKDTFYDRATFSLMCSYMGDGMENIDLPTPALLKPVELWTGKQLFSVLIRPHAHMKVYV 606

Query: 1924 NLTVFEKSYNKGRETLCPNDGFVYFRNSELICGQLGKATLGNGNKDGLFSVLLRDYDAHA 2103
            NL++ EK+Y+KG ET+C NDGFVY RNSELI GQLGKATLGNGNKDGLFSVLLRDY++HA
Sbjct: 607  NLSLMEKNYSKGGETMCANDGFVYIRNSELISGQLGKATLGNGNKDGLFSVLLRDYNSHA 666

Query: 2104 AASCMNRLAKLSARWIGNHGFSIGISDVQPGKSLSXXXXXXXXXXXXXXXXLIEHYKTGK 2283
            AASCMNRLAKLSARWIGNHGFSIGI DV PG  L+                 I+ Y  GK
Sbjct: 667  AASCMNRLAKLSARWIGNHGFSIGIDDVLPGSHLTKQKEEQIKGGYSNCDAFIDAYDKGK 726

Query: 2284 LELQPGCDAAQTLEAEITGILNNIREKAATVCMENLHWRNSPLIMSQCGSKGSPSNITQM 2463
            L L+PGC+AAQTLEAEIT +LN IR+ AA VCME LHWRNSPLIMSQCGSKGSP NI+QM
Sbjct: 727  LSLKPGCNAAQTLEAEITRVLNGIRDAAAKVCMEELHWRNSPLIMSQCGSKGSPINISQM 786

Query: 2464 IACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFVENSFYTGLTATEFFFHTMGGR 2643
            IACVGQQSVGGRRA NGFIDRSLPHFPRN  TP AKGFV NSFYTGLTA EFFFHTMGGR
Sbjct: 787  IACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGFVANSFYTGLTAAEFFFHTMGGR 846

Query: 2644 EGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRSASGGVVQFLYGDDGMDPSRMEGK 2823
            EGLVDTAVKTADTGY+SRRLIK+LEDLS HYD+TVR++SG ++QF YGDDGMDP++MEGK
Sbjct: 847  EGLVDTAVKTADTGYLSRRLIKSLEDLSTHYDDTVRNSSGTIIQFSYGDDGMDPAKMEGK 906

Query: 2824 DGTPLNLDRLYMKVKATCPARGHSSLSPTEIFELVVARLSKHDMTPEGGCSDAFKKSLLD 3003
             G PLNLDRL+MK+KATCPA   +SLSP+EI  +V  RLSKHDMTPE GCS AFK+ L  
Sbjct: 907  SGVPLNLDRLFMKIKATCPASVSASLSPSEISTIVNDRLSKHDMTPERGCSMAFKEEL-- 964

Query: 3004 EEGFMQNKEGGFLGKCITSLKNTRRDLQLDG---EKRGSESLEKVSANIAGITLQQLQVF 3174
                       F+ K + ++K TR  L LD    +K     LE V+ANI+GI+ QQL+VF
Sbjct: 965  ---------SNFIKKRMDAIKKTRNMLGLDEDCVDKEKFSGLEHVAANISGISRQQLRVF 1015

Query: 3175 LETCISRYHLKRXXXXXXXXXXXXXXXXXPGTQMTLKTFHFAGVA 3309
            LETCISRYHLKR                 PGTQMTLKTFHFAGVA
Sbjct: 1016 LETCISRYHLKRIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 1060



 Score =  365 bits (936), Expect = 1e-97
 Identities = 202/322 (62%), Positives = 243/322 (75%), Gaps = 5/322 (1%)
 Frame = +3

Query: 3315 VPRIKEIINGAKNISTPIITATLECKNDAKSARLVQGCIEKTVLGEIAESMKIIFTSRQA 3494
            VPRIKEI+  +K ISTPIITATL C ND KSAR+V+G IEKT+LGE+A+++KI  T  QA
Sbjct: 1068 VPRIKEILGASKKISTPIITATLVCDNDEKSARIVKGRIEKTLLGEVAKTVKISVTPTQA 1127

Query: 3495 CILVTLDIELIQRSQLKISAHSVQQSIWRHPKAK-----LKAQHVEVLNDRKLRIHAPVD 3659
             I +TLD++ I+  Q+ I A +V  SI  + KAK     LK +    L D KL+I  P  
Sbjct: 1128 SINITLDMKRIEALQMAIDAKTVADSISENLKAKVSRTKLKVKPTFTLPD-KLKILLPEI 1186

Query: 3660 DRTKIHFELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMG 3839
             R ++ + LH L+S+LPK+IV GIPTVERA+IN +K       G+ NLLVEGTNL AVMG
Sbjct: 1187 GRKEVLYSLHLLQSLLPKIIVKGIPTVERAVINNVK-------GKLNLLVEGTNLLAVMG 1239

Query: 3840 TLGVDGCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSK 4019
            T GVDG NTTSNHI+EV+ TLGIEAARK IIDEI YTMK HGM+ID+RHMMLL DLMT +
Sbjct: 1240 TPGVDGRNTTSNHIVEVEGTLGIEAARKSIIDEIQYTMKSHGMSIDLRHMMLLADLMTFR 1299

Query: 4020 GEVLGITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGT 4199
            G VLGI RFGI KMKESVLMLASFE+TAD LF+A+  GR D I GVSECIIMG+PMQIGT
Sbjct: 1300 GLVLGIQRFGITKMKESVLMLASFERTADILFDATTRGRVDTIAGVSECIIMGVPMQIGT 1359

Query: 4200 GILKIRQRLEHVPQLDYGPESI 4265
            GIL ++QR E + +L YGP+ I
Sbjct: 1360 GILSVQQRPEQLAKLTYGPDPI 1381


>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
            gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
            Japonica Group] gi|38347455|emb|CAD41360.2|
            OSJNBa0076N16.24 [Oryza sativa Japonica Group]
            gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
            Japonica Group] gi|116310339|emb|CAH67354.1|
            OSIGBa0130B08.14 [Oryza sativa Indica Group]
            gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
            Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
            protein product [Oryza sativa Japonica Group]
            gi|218195112|gb|EEC77539.1| hypothetical protein
            OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score = 1398 bits (3619), Expect = 0.0
 Identities = 695/1073 (64%), Positives = 834/1073 (77%), Gaps = 9/1073 (0%)
 Frame = +1

Query: 118  DAEIQFTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQDRKPKKNALLD 297
            + +++ TK+P++EDVG R+IKSI+FSM SG E+ +++E+QV+NS  Y+ + KP  N LLD
Sbjct: 5    EEKLRCTKEPFIEDVGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNHEMKPVPNGLLD 64

Query: 298  SRMGPANKFITCATCHGSLTDCPGHYGYFHLILPVFNVGYFNAILNVLKCVCKSCARILL 477
            +RMG ANK   C+TCHGS  +CPGH+GY  L LPVFNVG+FN IL+VLKC+CKSC+R+LL
Sbjct: 65   TRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCSRVLL 124

Query: 478  SERDRISYLKKMRNPKLEALQKTGLAKAILNKCKPKKCSRCGYINGVVKKSGTVMGIVHD 657
             E+DR+ +LKKMRNPK + LQK+ + K + +KCK  +C  CG+INGV KK    + I+HD
Sbjct: 125  MEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLIILHD 184

Query: 658  RSKLMDGVKEECEAAISKTKDSRTSFTVVYVLNPVRVLDLFRRILDQDCDLLYLSDRPEK 837
             SK +DG  EE   A+S  K+ + S + V +L+P  VL LF+R+ D+DC+LL L DRPEK
Sbjct: 185  CSKTLDGSTEELRDALSHKKE-KLSISAVRMLDPAIVLSLFKRMTDEDCELLNLGDRPEK 243

Query: 838  LIITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTIIQANTSLRQDLHCTSPTSKCLAA 1017
            LI+T+I VPP+ IRPS FV GG+ SNED IT  L +I   N+ L+++L       KC   
Sbjct: 244  LIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMKCFDC 303

Query: 1018 WELLQVEVAQYINSDVRGVPLSMQSSKPLRGFIQRLKGKQGRFRGNLSGKRVEYTARTVI 1197
            W+ LQ++V +YINSD   +P S       RG +QRLKGK GRFRGNLSGKR EYT RTVI
Sbjct: 304  WQHLQLQVVEYINSDAPSLPESQH-----RGLVQRLKGKTGRFRGNLSGKRTEYTGRTVI 358

Query: 1198 SPDPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRKCVANGPQKYPGANFIRLASGSLQ 1377
            SPDPNL+ITEV IPIL+A+VLTYPE VS YNIEKLR+C+ NGP K+PGANFI    G+  
Sbjct: 359  SPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQPDGTKL 418

Query: 1378 NLRYGRRKGYADALKYGDTVERHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNE 1557
            +L+Y  R+  A  LKYG  VERHLEDGD+VLFNRQPSLHRMSIMSHRA+IMPWRTLRFNE
Sbjct: 419  HLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 478

Query: 1558 SVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 1737
            SVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF
Sbjct: 479  SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 538

Query: 1738 LITRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNVLIRPHAQMRV 1917
            L+TR+D FYDR+SFSL+CSY+GDAM+ IDLPTPALIKP+ELWTGKQLF+VL+RP+A  +V
Sbjct: 539  LVTRKDNFYDRSSFSLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNACTKV 598

Query: 1918 FVNLTVFEKSYNKGR------ETLCPNDGFVYFRNSELICGQLGKATLGNGNKDGLFSVL 2079
            F+NLTV EK Y   +      E +CPNDGFVYFRNSEL+ GQ+GKATLGNGNKDG+FS L
Sbjct: 599  FLNLTVKEKIYKTPKGSTLEPEAMCPNDGFVYFRNSELLSGQVGKATLGNGNKDGMFSTL 658

Query: 2080 LRDYDAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPGKSLSXXXXXXXXXXXXXXXXL 2259
            +RDY++HAAASCMNRLAK SAR+IGNHGFSIG+ DVQPG+ L+                L
Sbjct: 659  VRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNQEKKMKIDGGYKDCHDL 718

Query: 2260 IEHYKTGKLELQPGCDAAQTLEAEITGILNNIREKAATVCMENLHWRNSPLIMSQCGSKG 2439
            I  Y  G L LQPGC+AAQTLE  IT +LN IRE+A  VCM  LHWRNSPLIMSQCGSKG
Sbjct: 719  IASYSKGALRLQPGCNAAQTLEQSITRVLNEIREEAGKVCMNTLHWRNSPLIMSQCGSKG 778

Query: 2440 SPSNITQMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFVENSFYTGLTATEF 2619
            SP NI+QM+ACVGQQSVGGRRA NGFIDR+LPHFP NS TP AKGFV NSFYTGLTATEF
Sbjct: 779  SPINISQMVACVGQQSVGGRRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYTGLTATEF 838

Query: 2620 FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRSASGGVVQFLYGDDGM 2799
            FFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVR+ASGG+VQFLYGDDGM
Sbjct: 839  FFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQFLYGDDGM 898

Query: 2800 DPSRMEGKDGTPLNLDRLYMKVKATCPARGHSSLSPTEIFELVVARLSKHDMTPEGGCSD 2979
            DP++MEGKDG PLNLD+L+MKV ATCP RG ++LSP EI +++  +LS+HD + + GCS+
Sbjct: 899  DPAKMEGKDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDKLSEHDASSDDGCSE 958

Query: 2980 AFKKSLLDEEGFMQNKEGGFLGKCITSLKNTRRDLQLDGE---KRGSESLEKVSANIAGI 3150
             FK+ L             FL   I  LK+TRR L LD +   +R S   E ++ANI+GI
Sbjct: 959  KFKQLLT-----------YFLEDRIKLLKSTRRALLLDEDHVGERHSSFEESIAANISGI 1007

Query: 3151 TLQQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXXPGTQMTLKTFHFAGVA 3309
            +++QLQVFL+TC+SRYHLK+                 PGTQMTLKTFHFAGVA
Sbjct: 1008 SVKQLQVFLDTCLSRYHLKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVA 1060



 Score =  398 bits (1022), Expect = e-107
 Identities = 207/319 (64%), Positives = 251/319 (78%)
 Frame = +3

Query: 3315 VPRIKEIINGAKNISTPIITATLECKNDAKSARLVQGCIEKTVLGEIAESMKIIFTSRQA 3494
            VPRIKEIIN AK ISTPIITA L  + D  SAR+V+G +EK VLGE+AE++KI+  S Q 
Sbjct: 1068 VPRIKEIINAAKKISTPIITAELLSEKDVLSARIVKGSMEKAVLGEVAEAIKIVLKSSQP 1127

Query: 3495 CILVTLDIELIQRSQLKISAHSVQQSIWRHPKAKLKAQHVEVLNDRKLRIHAPVDDRTKI 3674
             ++V LD++ I+   + ISA SVQ SI  HPK KLK++HV V++  KLRI+    D++K+
Sbjct: 1128 NLVVKLDMQRIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDKSKLRIYPAGIDKSKL 1187

Query: 3675 HFELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVD 3854
             +ELH LKSMLPKVIV GIPTVERA+I++  ++  K    + LLVEGTNL AVMGT GVD
Sbjct: 1188 LYELHHLKSMLPKVIVKGIPTVERAVISETGEENDKR---YKLLVEGTNLLAVMGTPGVD 1244

Query: 3855 GCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVLG 4034
               T SNHI+EV  TLGIEAAR+ IIDEI YTMK HGM ID RHMMLL DLMT KGE+LG
Sbjct: 1245 AMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMKSHGMNIDSRHMMLLADLMTYKGEILG 1304

Query: 4035 ITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKI 4214
            ITR+GI KMK SVLMLASFEKTA+HLFNAS +GR+D+IEGVSECIIMGIPMQ+GTGILK+
Sbjct: 1305 ITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKV 1364

Query: 4215 RQRLEHVPQLDYGPESIFS 4271
            RQRL+H+P+  Y P+ I +
Sbjct: 1365 RQRLDHLPEFKYQPDPILA 1383


>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
            brachyantha]
          Length = 1389

 Score = 1391 bits (3600), Expect = 0.0
 Identities = 687/1083 (63%), Positives = 834/1083 (77%), Gaps = 19/1083 (1%)
 Frame = +1

Query: 118  DAEIQFTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQDRKPKKNALLD 297
            + +++ TK+P++ED G R+IKSI+FSM SG E+ +++E+QV+NS  Y+Q+ +P  N LLD
Sbjct: 5    EEKLRCTKEPFIEDAGTRRIKSIRFSMFSGNEVRQSAEVQVWNSRIYNQEMRPVPNGLLD 64

Query: 298  SRMGPANKFITCATCHGSLTDCPGHYGYFHLILPVFNVGYFNAILNVLKCVCKSCARILL 477
            +RMG ANK   C+TCHGS  +CPGH+GY  L LPVFNVG+FN IL+VLKC+CK C+R+LL
Sbjct: 65   TRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKGCSRVLL 124

Query: 478  SERDRISYLKKMRNPKLEALQKTGLAKAILNKCKPKKCSRCGYINGVVKKSGTVMGIVHD 657
             E+DR+ +LKKMRNPK + LQK+ + K + +KCK  +C  CG+INGV KK    + I+HD
Sbjct: 125  VEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFINGVAKKGRAGLIILHD 184

Query: 658  RSKLMDGVKEECEAAISKTKDSRTSFTVVYVLNPVRVLDLFRRILDQDCDLLYLSDRPEK 837
             SK +DG  EE + A+S  K+ + SF+ V++L+P  VL LF+R+ D+DC+LL L DRPEK
Sbjct: 185  CSKTLDGSTEELKEALSHKKE-KLSFSAVHMLDPATVLSLFKRMTDEDCELLNLGDRPEK 243

Query: 838  LIITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTIIQANTSLRQDLHCTSPTSKCLAA 1017
            LI+T+I VPP+ IRPS FV GG+ SNED IT  L +I   N+ L+++L       KC   
Sbjct: 244  LIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILKSIANTNSILKENLQTGGQFMKCFDC 303

Query: 1018 WELLQVEVAQYINSDVRGVPLSMQSSKPLRGFIQRLKGKQGRFRGNLSGKRVEYTARTVI 1197
            W+ LQ++V +YINSD   +P S       RG +QRLKGK GRFRGNLSGKR EYT RTVI
Sbjct: 304  WQHLQLQVVEYINSDAPSLPESQH-----RGLVQRLKGKTGRFRGNLSGKRTEYTGRTVI 358

Query: 1198 SPDPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRKCVANGPQKYPGANFIRLASGSLQ 1377
            SPDPNL+ITEV IPIL+A+VLTYPE VS YNIEKLR+C+ NGP K+PGANFI    G+  
Sbjct: 359  SPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFIIQTDGTKL 418

Query: 1378 NLRYGRRKGYADALKYGDTVERHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNE 1557
            +L+Y  R+  A  LKYG  VERHLEDGD+VLFNRQPSLHRMSIMSHRA+IMPWRTLRFNE
Sbjct: 419  HLKYCDRRIAARDLKYGCVVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 478

Query: 1558 SVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 1737
            SVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF
Sbjct: 479  SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 538

Query: 1738 LITRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNVLIRPHAQMRV 1917
            L+TR+D FYDR+SF+L+CSY+GDAM+ IDLPTPAL+KP+ELWTGKQLF+VL+RP+A  +V
Sbjct: 539  LVTRKDNFYDRSSFTLLCSYLGDAMENIDLPTPALVKPIELWTGKQLFSVLVRPNACTKV 598

Query: 1918 FVNLTVFEKSYNKGRETLCPNDGFVYFRNSELICGQLGKATLGNGNKDGLFSVLLRDYDA 2097
            F+NLTV EK Y+K RET+CPNDGFVYFRNSEL+ GQ+GK TLGNGNKDG+FS+L+RDY++
Sbjct: 599  FLNLTVKEKIYSKSRETMCPNDGFVYFRNSELLSGQVGKKTLGNGNKDGMFSILVRDYNS 658

Query: 2098 HAAASCMNRLAKLSARWIGNHGFSIGISDVQPGKSLSXXXXXXXXXXXXXXXXLIEHYKT 2277
            HAAASCMNRLAK SAR+IGNHGFSIG+ DV+PG+ L                 LI  +  
Sbjct: 659  HAAASCMNRLAKFSARFIGNHGFSIGVDDVRPGEHLDQQKKKKIDEGYKECHDLITSFSK 718

Query: 2278 GKLELQPGCDAAQTLEAEITGILNNIREKAATVCMENLHWRNSPLIMSQCGSKGSPSNIT 2457
            G L LQPGC+AAQTLE +IT +LN IRE A  +CM+ LHWRNSPLIMSQCGSKGSP NI+
Sbjct: 719  GALTLQPGCNAAQTLEHKITHVLNKIREAAGNICMDTLHWRNSPLIMSQCGSKGSPINIS 778

Query: 2458 QMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFVENSFYTGLT---------- 2607
            QM+ CVGQQSVGG RA NGFIDR+LPHFP NS TP AKGFV NSFY GLT          
Sbjct: 779  QMVVCVGQQSVGGHRAPNGFIDRTLPHFPINSKTPAAKGFVANSFYNGLTATEFFFHTMG 838

Query: 2608 -------ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRSASGG 2766
                   ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVR+ASGG
Sbjct: 839  GIYIVLPATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGG 898

Query: 2767 VVQFLYGDDGMDPSRMEGKDGTPLNLDRLYMKVKATCPARGHSSLSPTEIFELVVARLSK 2946
            +VQFLYGDDGMDP++MEG+DG PLNLD+L+MKV ATCP RG ++LSP EI +++  +LS+
Sbjct: 899  IVQFLYGDDGMDPAKMEGEDGKPLNLDQLFMKVMATCPQRGQNTLSPGEILQILNDKLSE 958

Query: 2947 HDMTPEGGCSDAFKKSLLDEEGFMQNKEGGFLGKCITSLKNTRRDLQLDGEKRGSESL-- 3120
            HD + + GCS+ FK+ L D           FL   I  LK+TRR L LD    G +S   
Sbjct: 959  HDASSDDGCSEKFKQLLKD-----------FLEDRIKLLKSTRRALCLDENHVGKDSSIE 1007

Query: 3121 EKVSANIAGITLQQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXXPGTQMTLKTFHFA 3300
            E ++ANI+GI+ +QLQVFL+TC+SRYH K+                 PGTQMTLKTFHFA
Sbjct: 1008 ESIAANISGISAKQLQVFLDTCLSRYHSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFA 1067

Query: 3301 GVA 3309
            GVA
Sbjct: 1068 GVA 1070



 Score =  394 bits (1012), Expect = e-106
 Identities = 205/319 (64%), Positives = 249/319 (78%)
 Frame = +3

Query: 3315 VPRIKEIINGAKNISTPIITATLECKNDAKSARLVQGCIEKTVLGEIAESMKIIFTSRQA 3494
            VPRIKEIIN AK ISTPIITA L    D  SAR+V+G +EK VLGE+AE +KI+  S Q 
Sbjct: 1078 VPRIKEIINAAKKISTPIITAELLSGKDVLSARVVKGSMEKAVLGEVAEDIKIVLKSSQP 1137

Query: 3495 CILVTLDIELIQRSQLKISAHSVQQSIWRHPKAKLKAQHVEVLNDRKLRIHAPVDDRTKI 3674
             ++V LD++ I+   + ISA SVQ SI  HP+ KLK++HV V++  KLR++    D++K+
Sbjct: 1138 NLVVKLDMQRIEDLHMGISADSVQLSILNHPRIKLKSEHVRVIDKAKLRVYPTAIDKSKL 1197

Query: 3675 HFELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVD 3854
             +ELH+LKSMLPKVIV GIPTVERA+I++  DK       ++LLVEGTNL AVMGT GVD
Sbjct: 1198 LYELHNLKSMLPKVIVKGIPTVERAVISQTGDK-------YSLLVEGTNLLAVMGTPGVD 1250

Query: 3855 GCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVLG 4034
               T SNHI+EV  TLGIEAAR+ IIDEI YTM  HGM ID RHMMLL DLMT KGE+LG
Sbjct: 1251 AMKTKSNHIMEVNRTLGIEAARRSIIDEIQYTMTSHGMNIDSRHMMLLADLMTYKGEILG 1310

Query: 4035 ITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKI 4214
            ITR+GI KMK SVLMLASFEKTA+HLFNAS +GR+D+IEGVSECIIMGIPMQ+GTGILK+
Sbjct: 1311 ITRYGIAKMKSSVLMLASFEKTAEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKV 1370

Query: 4215 RQRLEHVPQLDYGPESIFS 4271
            RQRL+H+P+  Y P+ I +
Sbjct: 1371 RQRLDHLPEFKYQPDPILA 1389


>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
            gi|241937900|gb|EES11045.1| hypothetical protein
            SORBIDRAFT_06g021120 [Sorghum bicolor]
          Length = 1391

 Score = 1388 bits (3592), Expect = 0.0
 Identities = 694/1080 (64%), Positives = 830/1080 (76%), Gaps = 16/1080 (1%)
 Frame = +1

Query: 118  DAEIQFTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQDRKPKKNALLD 297
            + +++ TK+P++EDVG R+IKSI+FS++SG+EI K++E+QV+N+  Y  D KP  N LLD
Sbjct: 5    EEKLRCTKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYGHDMKPVPNGLLD 64

Query: 298  SRMGPANKFITCATCHGSLTDCPGHYGYFHLILPVFNVGYFNAILNVLKCVCKSCARILL 477
             RMG  NK   C+TCHG  +DCPGH+GY  L LPVFNVG+FN IL+VLKC+CKSC+R+LL
Sbjct: 65   PRMGVPNKREKCSTCHGEFSDCPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCSRVLL 124

Query: 478  SERDRISYLKKMRNPKLEALQKTGLAKAILNKCKPKKCSRCGYINGVVKKSGTVMGIVHD 657
             E+DR  +LKKMRNP+ +ALQK+   K + +KCK   C RC Y NGVVKK    + +VHD
Sbjct: 125  FEKDRREFLKKMRNPRADALQKSATMKKVRDKCKLSCCPRCDYRNGVVKKGRAGLIVVHD 184

Query: 658  RSKLMDGVKEECEAAISKTKDSRTSFTVVYVLNPVRVLDLFRRILDQDCDLLYLSDRPEK 837
             SK++DG  EE + A+   K+ + S   V VL+P  VL LFRR+ D+DC+LL L DRPEK
Sbjct: 185  CSKVLDGHTEELKNALQNKKE-KVSANSVRVLDPATVLSLFRRMTDEDCELLNLGDRPEK 243

Query: 838  LIITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTIIQANTSLRQDLHCTSPTSKCLAA 1017
            LI+++I VPP+ IRPS  V   + SNED IT  L +I+  N+ L++ LH   P +KC   
Sbjct: 244  LIVSEIAVPPVPIRPSVVVGSSRTSNEDSITVILKSIVNTNSILKETLHTGGPFTKCFDC 303

Query: 1018 WELLQVEVAQYINSDVRGVPLSMQSSKPLRGFIQRLKGKQGRFRGNLSGKRVEYTARTVI 1197
            W+ LQ++V +Y+NSD   +P S       RG +QRLKGK GRFRGNLSGKR EYT RTVI
Sbjct: 304  WQYLQLQVVEYVNSDAPCLPDSQH-----RGLVQRLKGKTGRFRGNLSGKRTEYTGRTVI 358

Query: 1198 SPDPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRKCVANGPQKYPGANFIRLASGSLQ 1377
            SPDPNLKITEV IP+L+A+VLTYPE VS YNIEKLR+C+ NGP KYPGANF+    G  Q
Sbjct: 359  SPDPNLKITEVAIPVLMARVLTYPERVSNYNIEKLRQCIRNGPFKYPGANFVTQPDGMKQ 418

Query: 1378 NLRYGRRKGYADALKYGDTVERHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNE 1557
            +L+YG R+  A  LK G  VERHLEDGDVVLFNRQPSLHRMSIMSHRA+IMPWRTLRFNE
Sbjct: 419  SLKYGDRRITARDLKCGCIVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 478

Query: 1558 SVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 1737
            SVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF
Sbjct: 479  SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 538

Query: 1738 LITRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNVLIRPHAQMRV 1917
            L+TR+DTFYDR+SF+L+CSY+GDAM+ IDLPTPALIKP+ELWTGKQLF+VL+RP+A  RV
Sbjct: 539  LVTRKDTFYDRSSFTLLCSYLGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNAHTRV 598

Query: 1918 FVNLTVFEKSYNK-------------GRETLCPNDGFVYFRNSELICGQLGKATLGNGNK 2058
            F+NL V EK Y+K             GRET+CPNDG+VYFRNSEL+ GQ+GKATLGNGNK
Sbjct: 599  FLNLAVQEKIYSKKKGKKEAGEETMCGRETMCPNDGYVYFRNSELLSGQVGKATLGNGNK 658

Query: 2059 DGLFSVLLRDYDAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPGKSLSXXXXXXXXXX 2238
            DGL+SVLLRDY++HAAASCMNRLAK SAR+IGNHGFSIG+ DVQPG+ L+          
Sbjct: 659  DGLYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKKKEIDGG 718

Query: 2239 XXXXXXLIEHYKTGKLELQPGCDAAQTLEAEITGILNNIREKAATVCMENLHWRNSPLIM 2418
                  LI  +  G L L PGC+AAQTLE  ITG+LN IR  A  VCM+ LHWRNSPLIM
Sbjct: 719  YKKCHDLISLFAKGALALHPGCNAAQTLEHNITGVLNEIRSIAGNVCMDTLHWRNSPLIM 778

Query: 2419 SQCGSKGSPSNITQMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFVENSFYT 2598
            SQCGSKGSP NI+QM+ACVGQQSVGGRRA +GF++R+LPHFP NS TP AKGFV NSFYT
Sbjct: 779  SQCGSKGSPINISQMVACVGQQSVGGRRAPDGFLNRTLPHFPINSKTPAAKGFVANSFYT 838

Query: 2599 GLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRSASGGVVQF 2778
            GLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVR+ASGG+VQF
Sbjct: 839  GLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGIVQF 898

Query: 2779 LYGDDGMDPSRMEGKDGTPLNLDRLYMKVKATCPARGHSSLSPTEIFELVVARLSKHDMT 2958
            LYGDDGMDP++MEGKDG PLNLD+L+MKV ATCP RG  +LSP  I +++  +L +HD +
Sbjct: 899  LYGDDGMDPAKMEGKDGMPLNLDQLFMKVMATCPQRGSDTLSPEAIKQMLEDKLLQHDTS 958

Query: 2959 PEGGCSDAFKKSLLDEEGFMQNKEGGFLGKCITSLKNTRRDLQLDG---EKRGSESLEKV 3129
             +GGCS+ FKK+L +           FL K I  +K TRR L L     EK+ S   E V
Sbjct: 959  SDGGCSEEFKKNLTE-----------FLDKRIELMKCTRRALHLHEDHVEKKDSCVEESV 1007

Query: 3130 SANIAGITLQQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXXPGTQMTLKTFHFAGVA 3309
            +A I+GI+ +QLQVFL+TC+SRY  K+                 PGTQMTLKTFHFAGVA
Sbjct: 1008 AAIISGISAKQLQVFLDTCLSRYQSKKIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVA 1067



 Score =  399 bits (1025), Expect = e-108
 Identities = 207/319 (64%), Positives = 251/319 (78%)
 Frame = +3

Query: 3315 VPRIKEIINGAKNISTPIITATLECKNDAKSARLVQGCIEKTVLGEIAESMKIIFTSRQA 3494
            VPRIKEIIN A+ ISTPIITA L  K D  SAR+V+G +EK VLGE+A +++I+  S Q 
Sbjct: 1075 VPRIKEIINAARKISTPIITAQLLSKKDVLSARIVKGSMEKAVLGEVAVAIQIVLKSSQP 1134

Query: 3495 CILVTLDIELIQRSQLKISAHSVQQSIWRHPKAKLKAQHVEVLNDRKLRIHAPVDDRTKI 3674
             ++V LD++LI+   + ISA SVQ SI  HPK KLK++HV V++  KLRI+    D+ K+
Sbjct: 1135 NLIVKLDMQLIESLHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPAGTDKRKL 1194

Query: 3675 HFELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVD 3854
              ELH+LKS+LPKVIV GIPTVER +I+++K K   ET  + LLVEGTNL AVMGT GVD
Sbjct: 1195 QLELHNLKSILPKVIVKGIPTVERVVIDEVKVKN--ETERYQLLVEGTNLLAVMGTPGVD 1252

Query: 3855 GCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVLG 4034
               T SNHI+E  +TLGIEAAR+ IIDEI YTMK HGM ID RHMMLL DLMT KGE+LG
Sbjct: 1253 ATKTKSNHIMETNQTLGIEAARRSIIDEIQYTMKSHGMNIDRRHMMLLADLMTYKGEILG 1312

Query: 4035 ITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKI 4214
            ITR+GI KMK SVLMLASFEKT++HLFNAS +GR+D+IEGVSECIIMGIPMQ+GTGILK+
Sbjct: 1313 ITRYGIAKMKSSVLMLASFEKTSEHLFNASYSGREDQIEGVSECIIMGIPMQLGTGILKV 1372

Query: 4215 RQRLEHVPQLDYGPESIFS 4271
            RQRL+HVP+  Y P+ I S
Sbjct: 1373 RQRLDHVPEFKYQPDPILS 1391


>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
            gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
            family protein [Populus trichocarpa]
          Length = 1394

 Score = 1375 bits (3558), Expect = 0.0
 Identities = 700/1083 (64%), Positives = 831/1083 (76%), Gaps = 17/1083 (1%)
 Frame = +1

Query: 112  QTDAEIQFTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQDRKPKKNAL 291
            Q   +I +TKQPY+EDVGPR+IKSIQFS MSG++I+KASE QV    +YD ++K     L
Sbjct: 3    QRAQDIIYTKQPYIEDVGPRRIKSIQFSTMSGSDILKASECQVHLGQYYDANKKAIVGGL 62

Query: 292  LDSRMGPANKFITCATCHGSLTDCPGHYGYFHLILPVFNVGYFNAILNVLKCVCKSCARI 471
            LD+RMG  NK  TC TC GS TDCPGH+GY +L+LPV+NVGY + IL++LKC+CKSC+R+
Sbjct: 63   LDTRMGAPNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILDILKCICKSCSRV 122

Query: 472  LLSERDRISYLKKMRNPKLEALQKTGLAKAILNKC------KPKKCSRCGYINGVVKKSG 633
            L+ E+ R SYLK+MRNP+ E L+K  L K I+ KC      K  KC RCGY+NG+VKK+G
Sbjct: 123  LVDEKLRKSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLRCGYMNGMVKKAG 182

Query: 634  TVMGIVHDRSKLMDGVKEECEAAISKTKDSRTSFTVV-YVLNPVRVLDLFRRILDQDCDL 810
            +V+GI+HDRSKL+DG  EEC++AI  T+++R    +  Y+LNPVRVL LF+R++++DC+L
Sbjct: 183  SVVGIIHDRSKLIDGYLEECKSAIGHTREARAPIGLATYILNPVRVLSLFQRMVEEDCEL 242

Query: 811  LYLSDRPEKLIITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTIIQANTSLRQDLHCT 990
            LYL  RPEKLIIT I VPPI+IRPS F +G + SNE+DIT +L  IIQ N  LR +L   
Sbjct: 243  LYLQGRPEKLIITTIAVPPISIRPSVFTEGSQ-SNENDITERLKQIIQFNAKLRLELLEG 301

Query: 991  SPTS-KCLAAWELLQVEVAQYINSDVRGVPLSMQSSKPLRGFIQRLKGKQGRFRGNLSGK 1167
              T  K L  W+ LQ  V  YINSDVR +PL MQ  +PL GF+QRL GKQGRFR NL+GK
Sbjct: 302  RRTGIKYLIGWDELQAVVTLYINSDVR-IPLDMQVGRPLSGFVQRLTGKQGRFRQNLAGK 360

Query: 1168 RVEYTARTVISPDPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRKCVANGPQKYPGAN 1347
            RVE+T RTVISPDPNLKITEV IPI +A++LTYPE V+ +NIEKLR+CV NG  KYPGA 
Sbjct: 361  RVEFTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVNNGSYKYPGAR 420

Query: 1348 FIRLASGSLQNLRYGRRKGYADALKYGDTVERHLEDGDVVLFNRQPSLHRMSIMSHRAKI 1527
             +    GS + L    RK  A+ LK G  V RHLEDGDVVLFNRQPSLHRMSIM HRA+I
Sbjct: 421  MVTYPDGSSKMLTGNYRKRIAEELKSGCIVHRHLEDGDVVLFNRQPSLHRMSIMCHRARI 480

Query: 1528 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVA 1707
            MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA +LMGVQNNLCTPKNGEILVA
Sbjct: 481  MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAFLLMGVQNNLCTPKNGEILVA 540

Query: 1708 STQDFLTSSFLITRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNV 1887
            STQDFLTSSFLITR+DTFYDRA+FSLMCSYM D MD +DLPTP+++KP+ELWTGKQLF+V
Sbjct: 541  STQDFLTSSFLITRKDTFYDRAAFSLMCSYMNDGMDLVDLPTPSVLKPIELWTGKQLFSV 600

Query: 1888 LIRPHAQMRVFVNLTVFEKSYN-------KGRETLCPNDGFVYFRNSELICGQLGKATLG 2046
            L+RPHA +RV+VNL + EK+Y+       K RET+CPNDG+VYFRNSELI GQLGKATLG
Sbjct: 601  LLRPHANVRVYVNLILKEKNYSRPNKEHKKERETMCPNDGYVYFRNSELISGQLGKATLG 660

Query: 2047 NGNKDGLFSVLLRDYDAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPGKSLSXXXXXX 2226
            NGNKDGL+S+LLRDY+A+AAA+CMNRLAKLSARWIGNHGFSIGI DVQPGK L       
Sbjct: 661  NGNKDGLYSILLRDYNAYAAATCMNRLAKLSARWIGNHGFSIGIDDVQPGKKLIDEKGKT 720

Query: 2227 XXXXXXXXXXLIEHYKTGKLELQPGCDAAQTLEAEITGILNNIREKAATVCMENLHWRNS 2406
                      LI  Y  G+L L+ GCDA QTLE EIT  LN +RE+A  VCM+ LHWRNS
Sbjct: 721  ISNGYRHCNKLIADYNGGRLALKSGCDATQTLETEITERLNKLREEAGDVCMKELHWRNS 780

Query: 2407 PLIMSQCGSKGSPSNITQMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFVEN 2586
            PLIMSQCGSKGSP NI+QMIACVGQQSVGG RA +GFIDRSLPHFPR S TP AKGFV N
Sbjct: 781  PLIMSQCGSKGSPINISQMIACVGQQSVGGSRAPDGFIDRSLPHFPRKSKTPAAKGFVAN 840

Query: 2587 SFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRSASGG 2766
            SFY+GL+ATEFFFHTMGGREGLVDTAVKTADTGYM+RRL K LEDL + YDNTV+ A GG
Sbjct: 841  SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMARRLSKGLEDLCVQYDNTVQDAGGG 900

Query: 2767 VVQFLYGDDGMDPSRMEGKDGTPLNLDRLYMKVKATCPARGHSSLSPTEIFELVVARLSK 2946
            +VQFLYGDDG+DP+ MEGK G PLN DRL+MKVKATC A     LSP++I  +V + L K
Sbjct: 901  IVQFLYGDDGLDPAIMEGKAGVPLNFDRLFMKVKATCGAEEDEYLSPSDISNIVQSLLLK 960

Query: 2947 HDMTPEGGCSDAFKKSLLDEEGFMQNKEGGFLGKCI--TSLKNTRRDLQLDGEKRGSESL 3120
            H+ T +G CS++F+KSL    G  Q K    L K +    ++N      ++G    S++ 
Sbjct: 961  HNGTLDGICSESFRKSLSSFLG-DQAKRLECLMKLVDGVEVENFENIKNVEGLTGISKNT 1019

Query: 3121 EKVSANIAGITLQQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXXPGTQMTLKTFHFA 3300
            EK++  ++GIT +QL+VFL+TC+ RY  KR                 PGTQMTLKTFHFA
Sbjct: 1020 EKIAQKVSGITEKQLEVFLKTCLDRYVWKRIEPGTAIGAIGAQSIGEPGTQMTLKTFHFA 1079

Query: 3301 GVA 3309
            GVA
Sbjct: 1080 GVA 1082



 Score =  381 bits (979), Expect = e-102
 Identities = 201/306 (65%), Positives = 243/306 (79%), Gaps = 3/306 (0%)
 Frame = +3

Query: 3315 VPRIKEIINGAKNISTPIITATLECKNDAKSARLVQGCIEKTVLGEIAESMKIIFTSRQA 3494
            VPRIKEIINGAK ISTPIIT  LE  ++  +AR+++G I+KTVLG++A+S+KI+ TSR A
Sbjct: 1090 VPRIKEIINGAKRISTPIITVELEHNSNVNAARIIKGRIQKTVLGQVAKSIKIVMTSRSA 1149

Query: 3495 CILVTLDIELIQRSQLKISAHSVQQSIWRHPKAKLKAQHVEVLNDRKLRIHAPVDDRTKI 3674
             + VTLD++ I+ +QL + A+ V++ I   PK K K Q + VL D KL +  P  DR K+
Sbjct: 1150 SVKVTLDMKTIREAQLSLDANIVRELILETPKIKRKLQRINVLEDGKLEVF-PGGDRNKL 1208

Query: 3675 HFELHSLKSMLPKVIVMGIPTVERAII--NKLKDKRGKETG-EHNLLVEGTNLRAVMGTL 3845
            HFELHSLK+MLP V+V GI TVER +I   KL D    + G ++N+ VEG  L+AVMGT 
Sbjct: 1209 HFELHSLKNMLPAVVVKGIKTVERVVIAQKKLDDAENDQGGPKYNMFVEGMGLQAVMGTE 1268

Query: 3846 GVDGCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGE 4025
            GVDG  T SNHIIEVQETLGIEAARKCIIDEI  TM+ HGM+IDIRHMMLL D+MTS+G 
Sbjct: 1269 GVDGRKTKSNHIIEVQETLGIEAARKCIIDEIKGTMESHGMSIDIRHMMLLADVMTSRGV 1328

Query: 4026 VLGITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGI 4205
            VLGITRFGIQKM +SVLMLASFEKT+DHLFNASV G+DDKIEGVSECIIMGIP+ IGTG+
Sbjct: 1329 VLGITRFGIQKMDKSVLMLASFEKTSDHLFNASVKGKDDKIEGVSECIIMGIPVAIGTGV 1388

Query: 4206 LKIRQR 4223
            LKI+QR
Sbjct: 1389 LKIQQR 1394


>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Setaria
            italica]
          Length = 1397

 Score = 1370 bits (3546), Expect = 0.0
 Identities = 684/1086 (62%), Positives = 835/1086 (76%), Gaps = 22/1086 (2%)
 Frame = +1

Query: 118  DAEIQFTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQDRKPKKNALLD 297
            + +++ TK+P++EDVG R+IKSI+FS++SG+EI K++E+QV+NS  Y+ D KP  N LLD
Sbjct: 5    EEKLRCTKEPFIEDVGARRIKSIRFSVLSGSEIRKSAEVQVWNSRIYEHDMKPVPNGLLD 64

Query: 298  SRMGPANKFIT---CATCHGSLTDCPGHYGYFHLILPVFNVGYFNAILNVLKCVCKSCAR 468
             RMG A+K  T   C+TCHG   +CPGH+GY  L LPVFNVG+FN IL+VLKC+CK C+R
Sbjct: 65   MRMGLASKKDTELKCSTCHGPFAECPGHFGYLKLALPVFNVGFFNCILDVLKCICKGCSR 124

Query: 469  ILLSERDRISYLKKMRNPKLEALQKTGLAKAILNKCKPKKCSRCGYINGVVKKSGTVMGI 648
            +LL+E+DR  +LKKMRNP+ +ALQK+ + K + +KCK   C RC Y NGVVKK    + +
Sbjct: 125  VLLAEKDRREFLKKMRNPRADALQKSAIMKKVRDKCKLTCCPRCEYKNGVVKKGRVGLIV 184

Query: 649  VHDRSKLMDGVKEECEAAISKTKDSRTSFTVVYVLNPVRVLDLFRRILDQDCDLLYLSDR 828
            +HD SK++DG  EE + A+   K+ + S + V +L+P   L LFRR++D+DC+LL L DR
Sbjct: 185  IHDCSKILDGHTEELKNALQHKKE-KVSTSSVRMLDPATALSLFRRMVDEDCELLNLGDR 243

Query: 829  PEKLIITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTIIQANTSLRQDLHCTSPTSKC 1008
            PEKLI+T+I VPP+ IRPS  V   + SNED IT+ L +I+  N+ L++ L      SKC
Sbjct: 244  PEKLIVTEIAVPPVPIRPSVVVGNTRTSNEDSITAILKSIVNTNSILKETLQTGGLFSKC 303

Query: 1009 LAAWELLQVEVAQYINSDVRGVPLSMQSSKPLRGFIQRLKGKQGRFRGNLSGKRVEYTAR 1188
               W+ LQ++V +++NSD   +P S       RG +QRLKGK GRFRGNLSGKR EYT R
Sbjct: 304  FDCWQQLQLQVVEFVNSDAPCLPESQH-----RGLVQRLKGKTGRFRGNLSGKRTEYTGR 358

Query: 1189 TVISPDPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRKCVANGPQKYPGANFIRLASG 1368
            TVISPDPNL+ITEV IP+L+A+VLTYPE VS YN+EKLR+C+ NGP K+PGANFI    G
Sbjct: 359  TVISPDPNLRITEVAIPVLMARVLTYPERVSNYNLEKLRQCIRNGPYKHPGANFIITPDG 418

Query: 1369 SLQNLRYGRRKGYADALKYGDTVERHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTLR 1548
            +  +L+YG R+ +A  LK G TVERHLEDGDVVLFNRQPSLHRMSIMSHRA+IMPWRTLR
Sbjct: 419  TKLSLKYGDRRIHARDLKCGYTVERHLEDGDVVLFNRQPSLHRMSIMSHRARIMPWRTLR 478

Query: 1549 FNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 1728
            FNESVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT
Sbjct: 479  FNESVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 538

Query: 1729 SSFLITRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNVLIRPHAQ 1908
            SSFL+TR+D FYDR+SF+L+CSY+GDAM+ IDLPTPALIKP+ELWTGKQLF+VL+RP+A+
Sbjct: 539  SSFLVTRKDAFYDRSSFALLCSYVGDAMENIDLPTPALIKPIELWTGKQLFSVLVRPNAR 598

Query: 1909 MRVFVNLTVFEKSYNK----------------GRETLCPNDGFVYFRNSELICGQLGKAT 2040
             +VF+NL V EK Y+K                GRET+CPNDG+VYFRNSEL+ GQ+GKAT
Sbjct: 599  TKVFLNLAVKEKIYSKKKEKKEGEEEEKETMCGRETMCPNDGYVYFRNSELLSGQVGKAT 658

Query: 2041 LGNGNKDGLFSVLLRDYDAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPGKSLSXXXX 2220
            LGNGNKDG++SVLLRDY++HAAASCMNRLAK SAR+IGNHGFSIG+ DVQPG+ L+    
Sbjct: 659  LGNGNKDGIYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKK 718

Query: 2221 XXXXXXXXXXXXLIEHYKTGKLELQPGCDAAQTLEAEITGILNNIREKAATVCMENLHWR 2400
                        LI  +  G L L PGC+AAQTLE +ITG+LN IR  A  VCM+ LHWR
Sbjct: 719  KKIDEGYKQCHDLISLFAKGALALHPGCNAAQTLEHKITGVLNEIRTAAGNVCMDTLHWR 778

Query: 2401 NSPLIMSQCGSKGSPSNITQMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFV 2580
            NSPLIMSQCGSKGSP NI+QM+ACVGQQSVGGRRA +GFIDR+LPHFP NS TP AKGFV
Sbjct: 779  NSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRTLPHFPINSKTPAAKGFV 838

Query: 2581 ENSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRSAS 2760
             NSFYTGLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVR+AS
Sbjct: 839  ANSFYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNAS 898

Query: 2761 GGVVQFLYGDDGMDPSRMEGKDGTPLNLDRLYMKVKATCPARGHSSLSPTEIFELVVARL 2940
            GG+VQFLYGDDGMDP++MEGKDGTPLNLD+L+MKV ATCP RG  +LSP +I +++  +L
Sbjct: 899  GGIVQFLYGDDGMDPAKMEGKDGTPLNLDQLFMKVTATCPHRGLDTLSPDDIKQMLEDKL 958

Query: 2941 SKHDMTPEGGCSDAFKKSLLDEEGFMQNKEGGFLGKCITSLKNTRRDLQLDGEKRGSESL 3120
            ++H  + +GGCS+ FK+ L             FL + I  LK TR+ L LD +  G    
Sbjct: 959  TQHKTSSDGGCSEEFKECLKK-----------FLEERIQLLKCTRKALHLDEKHVGKNDS 1007

Query: 3121 ---EKVSANIAGITLQQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXXPGTQMTLKTF 3291
               E ++ANI+GI+ +QLQVFL+TC SRY+ K                  PGTQMTLKTF
Sbjct: 1008 CIEEIIAANISGISAKQLQVFLDTCFSRYNSKAIEAGASIGAIGAQSIGEPGTQMTLKTF 1067

Query: 3292 HFAGVA 3309
            HFAGVA
Sbjct: 1068 HFAGVA 1073



 Score =  403 bits (1036), Expect = e-109
 Identities = 210/319 (65%), Positives = 255/319 (79%)
 Frame = +3

Query: 3315 VPRIKEIINGAKNISTPIITATLECKNDAKSARLVQGCIEKTVLGEIAESMKIIFTSRQA 3494
            VPRIKEIIN AK ISTPIIT  L  + D  SAR+V+G +EK VLGE+A ++KI+  S Q 
Sbjct: 1081 VPRIKEIINAAKKISTPIITTELLSRKDVLSARIVKGAMEKAVLGEVASAIKIVLKSSQP 1140

Query: 3495 CILVTLDIELIQRSQLKISAHSVQQSIWRHPKAKLKAQHVEVLNDRKLRIHAPVDDRTKI 3674
             ++V LD++LI+   + ISA SVQ SI  HPK KLK++HV V++  KLRI+    D++K+
Sbjct: 1141 NLVVKLDMQLIEALHMGISADSVQLSILNHPKIKLKSEHVRVIDRAKLRIYPAGTDKSKL 1200

Query: 3675 HFELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVD 3854
              ELH+LK+MLPKVIV GIPTVER +I++ K K GK   ++NLLVEGTNL AVMGT GVD
Sbjct: 1201 QLELHNLKAMLPKVIVKGIPTVERVVIDERK-KEGK-LEKYNLLVEGTNLLAVMGTPGVD 1258

Query: 3855 GCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVLG 4034
              NT SNHI+E+  TLGIEAAR+ IIDEI YTMK HGM ID+RHMMLL DLMT KGEVLG
Sbjct: 1259 ARNTKSNHIMEMNSTLGIEAARRSIIDEIQYTMKSHGMNIDVRHMMLLADLMTYKGEVLG 1318

Query: 4035 ITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILKI 4214
            ITR+GI KMK SVLMLASFEKT++HLFNAS +GR+D+IEGVSECIIMGIPMQ+GTGILK+
Sbjct: 1319 ITRYGIAKMKTSVLMLASFEKTSEHLFNASYSGREDEIEGVSECIIMGIPMQLGTGILKV 1378

Query: 4215 RQRLEHVPQLDYGPESIFS 4271
            RQRL+H+P+L Y P+ I S
Sbjct: 1379 RQRLDHLPELKYQPDPILS 1397


>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
            [Brachypodium distachyon]
          Length = 1392

 Score = 1364 bits (3530), Expect = 0.0
 Identities = 688/1080 (63%), Positives = 820/1080 (75%), Gaps = 16/1080 (1%)
 Frame = +1

Query: 118  DAEIQFTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQDRKPKKNALLD 297
            + +++ TK+P+VEDVG R+IKS++FSM SG EI +++E QV+N+  Y  D KP  N LLD
Sbjct: 5    EEKLRCTKEPFVEDVGTRRIKSMRFSMFSGKEIRQSAETQVWNNRIYGNDMKPVPNGLLD 64

Query: 298  SRMGPANKFITCATCHGSLTDCPGHYGYFHLILPVFNVGYFNAILNVLKCVCKSCARILL 477
             RMG ANKF  CATCHGS  +CPGH+GY  L+LPVFNVG+FN IL+VLK +CK C+RILL
Sbjct: 65   PRMGAANKFGECATCHGSYHECPGHFGYLKLVLPVFNVGFFNNILDVLKSICKGCSRILL 124

Query: 478  SERDRISYLKKMRNPKLEALQKTGLAKAILNKCKPKKCSRCGYINGVVKKSGTVMGIVHD 657
             E+D+  +LKKMRNP+LE L K  L K + +KCK  +C  CGYINGV KK    + IVHD
Sbjct: 125  HEKDQREFLKKMRNPRLEPLHKAALMKKVRDKCKLSRCPSCGYINGVAKKGRPGLLIVHD 184

Query: 658  RSKLMDGVKEECEAAISKTKDSRTSFTVVYVLNPVRVLDLFRRILDQDCDLLYLSDRPEK 837
             SK +DG  EE  +A+S  K+ + S + V+ L+P  VL LF+R+ D+DC+LL L DRPEK
Sbjct: 185  CSKTLDGSTEELRSALSHKKE-KLSISSVHTLDPATVLSLFKRMTDEDCELLNLGDRPEK 243

Query: 838  LIITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTIIQANTSLRQDLHCTSPTSKCLAA 1017
            LIIT+I VPP+ IRPS FV GG+ SNED IT  L  I+  N+ L+  L    P  KC   
Sbjct: 244  LIITEIAVPPVPIRPSVFVGGGRMSNEDGITCILRNIVNTNSILKGILQNGDPLMKCFDC 303

Query: 1018 WELLQVEVAQYINSDVRGVPLSMQSSKPLRGFIQRLKGKQGRFRGNLSGKRVEYTARTVI 1197
            W+LLQ++V +YINSD   +     +    RG +QRLKGK GRFRGNLSGKR EYT RTVI
Sbjct: 304  WQLLQLQVVEYINSDAPSL-----TDPQNRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVI 358

Query: 1198 SPDPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRKCVANGPQKYPGANFIRLASGSLQ 1377
            SPDPNL+ITEV IP+L+A+VLTYPE VS YNIEKLR+C+ NGP K+PGANF+    G+  
Sbjct: 359  SPDPNLRITEVAIPVLMARVLTYPERVSYYNIEKLRQCIRNGPHKHPGANFVTQPDGTKL 418

Query: 1378 NLRYGRRKGYADALKYGDTVERHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNE 1557
            +L+Y  R+  A  LKYG  VERHLEDGD+VLFNRQPSLHRMSIMSHRA+IMPWRTLRFNE
Sbjct: 419  HLKYCDRRIAARDLKYGCIVERHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 478

Query: 1558 SVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 1737
            SVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF
Sbjct: 479  SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 538

Query: 1738 LITRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNVLIRPHAQMRV 1917
            LITR+D FYDR+ F+L+CSY+GDAM+ IDLPTPA+IKP+ELWTGKQLF+VL+RP+A  +V
Sbjct: 539  LITRKDNFYDRSYFTLLCSYLGDAMENIDLPTPAIIKPLELWTGKQLFSVLVRPNACTKV 598

Query: 1918 FVNLTVFEKSYNKGR-----------ETLCPNDGFVYFRNSELICGQLGKATLGNGNKDG 2064
            ++NLTV EK Y K R           ET+CPNDG+VYFRNSEL+ GQ+GK TLGNGNKDG
Sbjct: 599  YLNLTVEEKIYMKRRERDKNAVSVLEETMCPNDGYVYFRNSELLSGQVGKKTLGNGNKDG 658

Query: 2065 LFSVLLRDYDAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPGKSLSXXXXXXXXXXXX 2244
            +FSVL+RDY++HAAASCMNRLAK SAR+IGNHGFSIG+ DVQPG+SL+            
Sbjct: 659  MFSVLVRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGESLNQKKKKTIDQGYT 718

Query: 2245 XXXXLIEHYKTGK--LELQPGCDAAQTLEAEITGILNNIREKAATVCMENLHWRNSPLIM 2418
                LI  Y  G    EL PGC+ AQTLE  ++ ILN +REKA   CM  LHWRNSPLIM
Sbjct: 719  ECHDLIAVYSKGAPGAELHPGCNRAQTLEVRVSAILNQLREKAGEHCMNTLHWRNSPLIM 778

Query: 2419 SQCGSKGSPSNITQMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFVENSFYT 2598
            SQCGSKGSP NI+QM+ CVGQQSVGGRRA +GFIDR+LPHFP +S TP AKGFV NSFYT
Sbjct: 779  SQCGSKGSPINISQMVVCVGQQSVGGRRAPDGFIDRTLPHFPIHSKTPAAKGFVANSFYT 838

Query: 2599 GLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRSASGGVVQF 2778
            GLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVR+AS G+VQF
Sbjct: 839  GLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASSGIVQF 898

Query: 2779 LYGDDGMDPSRMEGKDGTPLNLDRLYMKVKATCPARGHSSLSPTEIFELVVARLSKHDMT 2958
            +YGDDGMDP +MEGK G+PLNLD+L+MKVKATCP RGH  LSP  I +++  +LS+ DM+
Sbjct: 899  VYGDDGMDPVKMEGKGGSPLNLDQLFMKVKATCPQRGHDMLSPEAIMQMLNDKLSEQDMS 958

Query: 2959 PEGGCSDAFKKSLLDEEGFMQNKEGGFLGKCITSLKNTRRDLQLDGEKRG---SESLEKV 3129
              GGCSD FK+ L             F    I  L++TRR L LD +  G   S   E++
Sbjct: 959  -SGGCSDKFKELLTK-----------FFEDRIKMLRSTRRTLHLDEDHVGMKDSSIEERI 1006

Query: 3130 SANIAGITLQQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXXPGTQMTLKTFHFAGVA 3309
            +ANI+GI+ +QLQVFL+TC+SRYH K                  PGTQMTLKTFHFAGVA
Sbjct: 1007 AANISGISAKQLQVFLDTCLSRYHSKIIEAGASIGAIGAQSIGEPGTQMTLKTFHFAGVA 1066



 Score =  378 bits (971), Expect = e-101
 Identities = 201/320 (62%), Positives = 247/320 (77%), Gaps = 1/320 (0%)
 Frame = +3

Query: 3315 VPRIKEIINGAKNISTPIITATLECKNDAKSARLVQGCIEKTVLGEIAESMKIIFTSRQA 3494
            VPRIKEIIN AKNISTPIITA L    D   A  V+  +EK VLGE+A  +KI+  S Q 
Sbjct: 1074 VPRIKEIINAAKNISTPIITAELLSGQDMSFAVKVKRYVEKVVLGEVAAVIKIVLKSSQP 1133

Query: 3495 CILVTLDIELIQ-RSQLKISAHSVQQSIWRHPKAKLKAQHVEVLNDRKLRIHAPVDDRTK 3671
             ++V LD++ I+ +  + IS+ SVQQSI RHPK KLK++HV V++  KLRI+    D++K
Sbjct: 1134 NLVVKLDMQRIEAQGYMGISSDSVQQSIIRHPKIKLKSEHVRVIDGAKLRIYPTGTDKSK 1193

Query: 3672 IHFELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGV 3851
            +  ELH+LKSMLPKVIV GIPTVERA++N +K +  K    +NLLVEGTNL  V+GT GV
Sbjct: 1194 LQLELHTLKSMLPKVIVKGIPTVERAVVNPVK-RPDKTLDRYNLLVEGTNLLKVLGTPGV 1252

Query: 3852 DGCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVL 4031
            D   T SNHI+EV +TLGIEAAR+ IIDEI YT + + M ID RHMMLL DLMT KGEVL
Sbjct: 1253 DAKKTKSNHIMEVNQTLGIEAARRSIIDEIRYTFESNNMIIDQRHMMLLADLMTYKGEVL 1312

Query: 4032 GITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILK 4211
            GITRFGI KMK SVLMLASFEKT +HLFNAS +GR+D+IEGVSECIIMGIPM +G+GILK
Sbjct: 1313 GITRFGIVKMKSSVLMLASFEKTLEHLFNASYSGREDEIEGVSECIIMGIPMTLGSGILK 1372

Query: 4212 IRQRLEHVPQLDYGPESIFS 4271
            +RQRL+H+P+ +Y P++I S
Sbjct: 1373 VRQRLDHLPEFNYQPDAIIS 1392


>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
            gi|557526635|gb|ESR37941.1| hypothetical protein
            CICLE_v10027681mg [Citrus clementina]
          Length = 1397

 Score = 1359 bits (3517), Expect = 0.0
 Identities = 713/1099 (64%), Positives = 823/1099 (74%), Gaps = 33/1099 (3%)
 Frame = +1

Query: 112  QTDAEIQFTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQDRKPKKNAL 291
            Q    I FTKQPY+EDVGPRKI+SIQFSMMS +EIMKA+E+QV+   +Y  +R P +  L
Sbjct: 7    QKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIEGGL 66

Query: 292  LDSRM---------------GPANKFITCATCHGSLTDCPGHYGYFHLILPVFNVGYFNA 426
            LD RM               GPANK  TCATCHG  ++CPGHYGY  L LPV+NVGY + 
Sbjct: 67   LDPRMEKIIFLQRLFFHGFQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLST 126

Query: 427  ILNVLKCVCKSCARILLSERDRISYLKKMRNPKLEALQKTGLAKAILNKC-----KPKKC 591
            IL++LKC+CK C+R+LL E+    YLKKMRNPK+EAL+KT L K+I+ KC     K  KC
Sbjct: 127  ILDILKCICKYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKC 186

Query: 592  SRCGYINGVVKKSGTVMGIVHDRSKLMDGVKEECEAAISKTKDSRTSFTVV-YVLNPVRV 768
             RCGYING+VKK+  V+GI+HDRSK+ + + +E  +AI+ TK+S+ +  V  Y+LNPV V
Sbjct: 187  PRCGYINGMVKKAVAVLGIIHDRSKVTESL-QEFASAITHTKESKAAVNVATYILNPVNV 245

Query: 769  LDLFRRILDQDCDLLYLSDRPEKLIITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTI 948
            L LF+R+ D DC++LYLS+RPEKLIIT+I VPPIAIRPS  +DG + SNE+DIT +L  I
Sbjct: 246  LFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQ-SNENDITERLKRI 304

Query: 949  IQANTSLRQDLHCTSPTSKCLAAWELLQVEVAQYINSDVRGVPLSMQSSKPLRGFIQRLK 1128
            IQ N SL+Q+L   +   K LA WE LQVEVAQYINSDVRGVP SMQ ++PL GF+QRLK
Sbjct: 305  IQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLK 364

Query: 1129 GKQGRFRGNLSGKRVEYTARTVISPDPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRK 1308
            GKQGRFRGNLSGKRVEYT RTVISPDPNLKITEV IPI +A++LTYPE VS +NIEKLR+
Sbjct: 365  GKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQ 424

Query: 1309 CVANGPQKYPGANFIRLASGSLQNLRYGR-RKGYADALKYGDTVERHLEDGDVVLFNRQP 1485
            C+ NGP KYPGA  IR   G+ + L YG+ R   A  LK G  V+RHLEDGDVVLFNRQP
Sbjct: 425  CIQNGPDKYPGARMIRYPDGTARVL-YGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQP 483

Query: 1486 SLHRMSIMSHRAKIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQ 1665
            SLHRMSIM HRA+IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAL+LMGVQ
Sbjct: 484  SLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQ 543

Query: 1666 NNLCTPKNGEILVASTQDFLTSSFLITRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALI 1845
            NNLCTPKNGEILVASTQDFLTSSFLITR+DTFYDRA+FSLMC YMGD MD +DLPTPA++
Sbjct: 544  NNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAIL 603

Query: 1846 KPVELWTGKQLFNVLIRPHAQMRVFVNLTVFEKSYNKGR-----------ETLCPNDGFV 1992
            KPVELWTGKQLF+VLIRPHA MRV+VNLTV EK+Y+              ET+CPNDGFV
Sbjct: 604  KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFV 663

Query: 1993 YFRNSELICGQLGKATLGNGNKDGLFSVLLRDYDAHAAASCMNRLAKLSARWIGNHGFSI 2172
            YFRNSELI GQLGKATLG                      CMNRLAKLSARWIGNHGFSI
Sbjct: 664  YFRNSELISGQLGKATLG----------------------CMNRLAKLSARWIGNHGFSI 701

Query: 2173 GISDVQPGKSLSXXXXXXXXXXXXXXXXLIEHYKTGKLELQPGCDAAQTLEAEITGILNN 2352
            GI DVQP K LS                 I+ Y  GKL+L+PGCDAAQTLEA IT ILN 
Sbjct: 702  GIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNR 761

Query: 2353 IREKAATVCMENLHWRNSPLIMSQCGSKGSPSNITQMIACVGQQSVGGRRAMNGFIDRSL 2532
            IRE A   CM +L WRNSPLIMSQCGSKGSP NI+QM+ACVGQQSVGGRRA NGFIDRSL
Sbjct: 762  IREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSL 821

Query: 2533 PHFPRNSVTPDAKGFVENSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKA 2712
            PHFPR +  P AKGFV NSFY+GL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKA
Sbjct: 822  PHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKA 881

Query: 2713 LEDLSIHYDNTVRSASGGVVQFLYGDDGMDPSRMEGKDGTPLNLDRLYMKVKATCPARGH 2892
            LEDLSI YDN+VR+A G +VQFLYGDDGMDP+ MEGK G PLN DRL MKVKATCP  G 
Sbjct: 882  LEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQ 941

Query: 2893 SSLSPTEIFELVVARLSKHDMTPEGGCSDAFKKSLLDEEGFMQNKEGGFLGKCITSLKNT 3072
              LSP ++ E+V  +L+ +    +  CS+AF  SL       Q+K    L K I  ++  
Sbjct: 942  RYLSPQQVSEIVEKQLAAYG---KESCSEAFLNSLRKFFEGQQDK----LDKKIKFVE-- 992

Query: 3073 RRDLQLDGEKRGSESLEKVSANIAGITLQQLQVFLETCISRYHLKRXXXXXXXXXXXXXX 3252
              D+  D +   S+ LE+V+   +GIT +QL+VF++TC SRYH+KR              
Sbjct: 993  --DIGWDDK---SQILEEVTHKTSGITEKQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQS 1047

Query: 3253 XXXPGTQMTLKTFHFAGVA 3309
               PGTQMTLKTFHFAGVA
Sbjct: 1048 IGEPGTQMTLKTFHFAGVA 1066



 Score =  409 bits (1052), Expect = e-111
 Identities = 224/325 (68%), Positives = 263/325 (80%), Gaps = 6/325 (1%)
 Frame = +3

Query: 3315 VPRIKEIINGAKNISTPIITATLECKNDAKSARLVQGCIEKTVLGEIAESMKIIFTSRQA 3494
            VPRIKEIINGAK ISTPIITA LEC ++  +AR+V+G IEKT+LG++A+S+KI+ TSR A
Sbjct: 1074 VPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTSRLA 1133

Query: 3495 CILVTLDIELIQRSQLKISAHSVQQSIWRHPKAKLKAQHVEVLNDRKLRIHAPVDDRTKI 3674
             I++ LD+E IQ + L I+A  V++SI + PK KLK QH++VL+ RKL I  PVD ++KI
Sbjct: 1134 SIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFPPVD-KSKI 1192

Query: 3675 HFELHSLKSMLPKVIVMGIPTVERAII-NKLKDKRG-KETGE---HNLLVEGTNLRAVMG 3839
            HFEL+SLK++LP VIV GI TVER +I  K K+KR  KE GE   + LLVEGT L+AVMG
Sbjct: 1193 HFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQAVMG 1252

Query: 3840 TLGVDGCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSK 4019
              G+DGC T SNHI EVQ+TLGIEAAR CIIDEIN TMK HGM+ID RHMMLL DLMT +
Sbjct: 1253 AEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLMTFR 1312

Query: 4020 GEVLGITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGT 4199
            GEVLGITRFGIQKM +SVLMLASFEKTADHLFNASVNGRDD+IEGVSECIIMGIPM +GT
Sbjct: 1313 GEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMPLGT 1372

Query: 4200 GILKIRQRLEHVPQLDYG-PESIFS 4271
            GILKIRQR    P L YG P+ I S
Sbjct: 1373 GILKIRQRDAVPPMLKYGAPDPIMS 1397


>gb|EYU39043.1| hypothetical protein MIMGU_mgv1a000232mg [Mimulus guttatus]
          Length = 1394

 Score = 1355 bits (3508), Expect = 0.0
 Identities = 693/1077 (64%), Positives = 820/1077 (76%), Gaps = 16/1077 (1%)
 Frame = +1

Query: 127  IQFTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQDRKPKKNALLDSRM 306
            IQFTK+PYVEDVGPR+I+SIQFS  S  E++KA E++V    +YD++RKP  N LLD RM
Sbjct: 7    IQFTKRPYVEDVGPRRIESIQFSTFSAAEVLKAGEVEVNKIAYYDENRKPIDNGLLDQRM 66

Query: 307  GPANKFITCATCHGSLTDCPGHYGYFHLILPVFNVGYFNAILNVLKCVCKSCARILLSER 486
            GPANK I C TC G   DCPGHYGY  L LPV+NVG+F  I+++LKC+CK+C+R+LL+++
Sbjct: 67   GPANKSILCKTCGGKFVDCPGHYGYLPLALPVYNVGFFLTIIDILKCICKNCSRVLLADK 126

Query: 487  DRISYLKKMRNPKLEALQKTGLAKAILNKC-------KPKKCSRCGYINGVVKKSGTVMG 645
            D   +LK+MRNPK E L+K  + K ++ KC       +  KCSRCGYING+VKK+   + 
Sbjct: 127  DHQVFLKQMRNPKCETLKKIEIQKRVVKKCNSLAGSKRAVKCSRCGYINGMVKKAKEPLK 186

Query: 646  IVHDRSKLMDGVKEECEAAISKTKDSRTSFTVVYVLNPVRVLDLFRRILDQDCDLLYLSD 825
            I HDR+K++D   +E  +A++ TKD + +  V+  ++P     L   +LD+DC+LLYL D
Sbjct: 187  IQHDRAKVVDNCLDERRSALAHTKDIKGNPVVISTIDPKTAYHLLENMLDEDCELLYLHD 246

Query: 826  RPEKLIITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTIIQANTSLRQDLHCTSPTSK 1005
            RPEKLI+T+ILVPPIAIRPS F      SNE+DITS+L  IIQ N ++ Q++   S  S+
Sbjct: 247  RPEKLIVTNILVPPIAIRPSVFSTRAM-SNENDITSRLKQIIQINAAVLQEMSDQSSQSQ 305

Query: 1006 CLAA-WELLQVEVAQYINSDVRGVPLSM-QSSKPLRGFIQRLKGKQGRFRGNLSGKRVEY 1179
             L   W+ LQVEVAQYINSDVR VPL   +++KPL GF+QRLKGKQGRFRGNLSGKRVE+
Sbjct: 306  SLTNNWDSLQVEVAQYINSDVR-VPLQYSENTKPLSGFVQRLKGKQGRFRGNLSGKRVEF 364

Query: 1180 TARTVISPDPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRKCVANGPQKYPGANFIRL 1359
            T RTVISPDPNLKI EV +PIL+AQ+L+YPE VS +NIE+LR+CV NGP KYPGA FI+ 
Sbjct: 365  TGRTVISPDPNLKINEVAVPILMAQILSYPERVSHHNIERLRQCVRNGPTKYPGAKFIKH 424

Query: 1360 ASGSLQNLRYGRRKGYADALKYGDTVERHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWR 1539
              G+  +L    R   AD LKYG  V RHL+DGD++LFNRQPSLHRMSIMSHRA+IMPWR
Sbjct: 425  PDGTEISLTGKIRHRAADDLKYGYIVCRHLQDGDIILFNRQPSLHRMSIMSHRARIMPWR 484

Query: 1540 TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD 1719
            TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD
Sbjct: 485  TLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQD 544

Query: 1720 FLTSSFLITRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNVLIRP 1899
            FLTSS+LITR+DTFYDRASFSL+CSYMGDAMD IDLPTPAL+KPVELWTGKQLF++L+RP
Sbjct: 545  FLTSSYLITRKDTFYDRASFSLICSYMGDAMDPIDLPTPALVKPVELWTGKQLFSILLRP 604

Query: 1900 HAQMRVFVNLTVFEKSYNKGRETLCPNDGFVYFRNSELICGQLGKATLGNGNKDGLFSVL 2079
            HA+MRV+VNLTV EK+Y K  ET+CP DGFVY RNSELI GQLGKATLGNG+KDGL+SVL
Sbjct: 605  HAKMRVYVNLTVAEKNYGKSGETMCPKDGFVYIRNSELISGQLGKATLGNGSKDGLYSVL 664

Query: 2080 LRDYDAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPGKSLSXXXXXXXXXXXXXXXXL 2259
            LRDY AHAAA+CMNRLAKLSARWIGNHGFSIGI+DVQPG  L+                 
Sbjct: 665  LRDYSAHAAATCMNRLAKLSARWIGNHGFSIGINDVQPGIVLNKEKKVTIDKGYGQCIDY 724

Query: 2260 IEHYKTGKLELQPGCDAAQTLEAEITGILNNIREKAATVCMENLHWRNSPLIMSQCGSKG 2439
            I  YK+G L+L PGC+ A+TLEA ITG LNNIRE+ A VCM NLHWRNSPLIMSQC    
Sbjct: 725  IGSYKSGSLDLLPGCNNAETLEANITGTLNNIRERTANVCMNNLHWRNSPLIMSQCDG-- 782

Query: 2440 SPSNITQMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFVENSFYTGLTATEF 2619
                     ACVGQQSVGGRRA NGF+DR+LPHF R +  PDAKGFV+NSFYTGL+ATEF
Sbjct: 783  ---------ACVGQQSVGGRRAPNGFLDRTLPHFEREAKDPDAKGFVQNSFYTGLSATEF 833

Query: 2620 FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRSASGGVVQFLYGDDGM 2799
            FFHTMGGREGLVDTAVKTADTGYMSRRL+KALEDLS+HYD TVR+AS  +VQF+YG D M
Sbjct: 834  FFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVHYDGTVRNASVCIVQFVYGGDAM 893

Query: 2800 DPSRMEGKDGTPLNLDRLYMKVKATCPARGHSSLSPTEI----FELVVARLSKHDMTPEG 2967
            DP +ME K G PLN +RL+MK KATCPA    SLS  EI     E++  RLS+   TPEG
Sbjct: 894  DPGQMEEKSGLPLNFERLFMKAKATCPAVEQKSLSIEEIDKTMDEIIGDRLSESTATPEG 953

Query: 2968 GCSDAFKKSLLDEEGFMQNKEGGFLGKCITSLKNTRRDLQLDGEKRGSES---LEKVSAN 3138
              S AF  S  ++EG M+  +            N+   L+L+G++   E    LEK+++N
Sbjct: 954  ESSQAFSAS-SNKEGGMETFDNSLRKFIQKKYPNSDLMLKLNGKEHSDEDKGYLEKIASN 1012

Query: 3139 IAGITLQQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXXPGTQMTLKTFHFAGVA 3309
            I G+T QQL VFLETCISRY LK+                 PGTQMTLKTFHFAGVA
Sbjct: 1013 ICGVTRQQLMVFLETCISRYRLKKIEGGTAIGAIGAHSIGEPGTQMTLKTFHFAGVA 1069



 Score =  369 bits (946), Expect = 9e-99
 Identities = 199/320 (62%), Positives = 247/320 (77%), Gaps = 1/320 (0%)
 Frame = +3

Query: 3315 VPRIKEIINGAKNISTPIITATLECKNDAKSARLVQGCIEKTVLGEIAESMKIIFTSRQA 3494
            VPRIKEIIN AK I+TPII+  L+  N+   A++V+G IEKT+L ++A+S+K    SR  
Sbjct: 1077 VPRIKEIINAAKKINTPIISTALQSDNNEIIAKIVKGRIEKTLLEQVAKSIKTSQASRST 1136

Query: 3495 CILVTLDIELIQRSQLKISAHSVQQSIWRHPKAKLKAQHVEVLNDRKLRIHAPVDDRTKI 3674
             I++TLD+  IQ + L + A++V++SI +  + KLK Q V+VL+ RKL I    D +TK+
Sbjct: 1137 SIVITLDMTKIQGAHLSVDAYTVKESILKTKRMKLKEQQVKVLDHRKLEIVMQAD-KTKL 1195

Query: 3675 HFELHSLKSMLPKVIVMGIPTVERAII-NKLKDKRGKETGEHNLLVEGTNLRAVMGTLGV 3851
             FELH LK+ + KV+V GI TVERAII N+ K+K      +  LLVEGT L +VMG  GV
Sbjct: 1196 QFELHGLKNKISKVVVKGIDTVERAIILNEAKEKDPSANKKMKLLVEGTGLLSVMGIEGV 1255

Query: 3852 DGCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGEVL 4031
            +G  TTSNHIIEVQ  LGIEAARK IIDEI YTM  HGMTIDIRHMMLL DLMTSKGEVL
Sbjct: 1256 EGRKTTSNHIIEVQHILGIEAARKKIIDEIQYTMSSHGMTIDIRHMMLLADLMTSKGEVL 1315

Query: 4032 GITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILK 4211
            GITR+G+QKMK+SVLMLASFE+T+DHLFNASVNGR DKIEGVSECIIMGIP+QIGTG+LK
Sbjct: 1316 GITRYGVQKMKDSVLMLASFERTSDHLFNASVNGRVDKIEGVSECIIMGIPVQIGTGMLK 1375

Query: 4212 IRQRLEHVPQLDYGPESIFS 4271
            +RQ ++ + +L YGP+ I S
Sbjct: 1376 VRQNVKPI-ELTYGPDPIIS 1394


>gb|EPS62830.1| hypothetical protein M569_11956, partial [Genlisea aurea]
          Length = 1368

 Score = 1335 bits (3456), Expect = 0.0
 Identities = 669/1074 (62%), Positives = 813/1074 (75%), Gaps = 13/1074 (1%)
 Frame = +1

Query: 127  IQFTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQDRKPKKNALLDSRM 306
            +Q TKQPY+EDVG R+I+SI FS +SG+E++K + ++V+   +YD ++KP  N LLD RM
Sbjct: 1    LQSTKQPYIEDVGSRRIESINFSTLSGSEVLKTAVVEVYKGSYYDANKKPVSNGLLDMRM 60

Query: 307  GPANKFITCATCHGSLTDCPGHYGYFHLILPVFNVGYFNAILNVLKCVCKSCARILLSER 486
            GP NK   C TCHG+  +CPGHYGY  L LPV+NVGY + I+++LKC+CK+C+R+LL E+
Sbjct: 61   GPPNKRSVCGTCHGNFQECPGHYGYLALALPVYNVGYLSNIVDILKCICKNCSRVLLEEK 120

Query: 487  DRISYLKKMRNPKLEALQKTGLAKAILNKCKPK-------KCSRCGYINGVVKKSGTVMG 645
            +   +L+KMRNP+LE L+KT L K I+ +C  K       KC RCG+ING+VK++     
Sbjct: 121  EHHGFLRKMRNPRLEPLKKTDLFKKIVKRCNSKAGSNKLAKCPRCGHINGMVKRAP--YK 178

Query: 646  IVHDRSKLMDGVKEECEAAISKTKDSRTSFTVVYVLNPVRVLDLFRRILDQDCDLLYLSD 825
            +++DR +++D   EEC++A    K SR + T    L+ + V  L R +LD+DC+LLY+ D
Sbjct: 179  VMYDRGRVIDSQMEECQSAGPSMKASRGNTTST--LDALFVFRLLRNMLDEDCELLYIHD 236

Query: 826  RPEKLIITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTIIQANTSLRQDLHCTSPTSK 1005
            RPEKL++T+ILVPP AIRPS FVDGG  SNE+DIT +L  II+AN +L Q L  T+   K
Sbjct: 237  RPEKLMVTNILVPPTAIRPSVFVDGGTQSNENDITERLKYIIEANANLSQQLLETNIYKK 296

Query: 1006 CLAAWELLQVEVAQYINSDVRGVPL-SMQSSKPLRGFIQRLKGKQGRFRGNLSGKRVEYT 1182
             + +WE LQ+EVAQYINSD RG+PL    SSKPL GF+QRLKGKQGRFRGNLSGKRVEYT
Sbjct: 297  GVTSWETLQIEVAQYINSDTRGLPLYGGGSSKPLSGFVQRLKGKQGRFRGNLSGKRVEYT 356

Query: 1183 ARTVISPDPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRKCVANGPQKYPGANFIRLA 1362
             RTVISPDPNLKITEV +PIL+A++LTYPE VS  NI +LR+CV  GP +YPGA FIR  
Sbjct: 357  GRTVISPDPNLKITEVAVPILMAKILTYPERVSHQNIAELRECVRRGPNEYPGAKFIRQP 416

Query: 1363 SGSLQNLRYGRRKGYADALKYGDTVERHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRT 1542
             G+  +LR+  RK +ADALKYGD V+RHL+DGD+VLFNRQPSLHRMSIM HRA+IMPWRT
Sbjct: 417  DGTEISLRFSSRKIHADALKYGDIVDRHLKDGDIVLFNRQPSLHRMSIMCHRARIMPWRT 476

Query: 1543 LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDF 1722
            LRFNESVCNPYNADFDGDEMNMHVPQTEE+R EA+MLMGVQNNLCTPKNGE+LVASTQDF
Sbjct: 477  LRFNESVCNPYNADFDGDEMNMHVPQTEESRAEAIMLMGVQNNLCTPKNGEVLVASTQDF 536

Query: 1723 LTSSFLITRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNVLIRPH 1902
            LTSSFLITR+DTFYDR++FSL+C+++ D +  +DLP PA++KPVELWTGKQ+F+VL+RP 
Sbjct: 537  LTSSFLITRKDTFYDRSAFSLICAFVSDGLGTVDLPMPAVVKPVELWTGKQIFSVLLRPD 596

Query: 1903 AQMRVFVNLTVFEKSYNKGRETLCPNDGFVYFRNSELICGQLGKATLGNGNKDGLFSVLL 2082
               +VFVNLTV EK Y K  ET+CP DGFV  RNSELI GQLGKATLGNG+KDGL+S+LL
Sbjct: 597  KDRKVFVNLTVAEKIYVKSGETMCPRDGFVCIRNSELISGQLGKATLGNGSKDGLYSILL 656

Query: 2083 RDYDAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPGKSLSXXXXXXXXXXXXXXXXLI 2262
            RDY AHAAA CMNRLAKLSARWIGNHGFSIGI+DVQPG  L+                 I
Sbjct: 657  RDYGAHAAADCMNRLAKLSARWIGNHGFSIGINDVQPGDILNTEKKTVIDDEYGQCIRYI 716

Query: 2263 EHYKTGKLELQPGCDAAQTLEAEITGILNNIREKAATVCMENLHWRNSPLIMSQCGSKGS 2442
            E YK+GKLEL PGC+ A+TLEA+ITG LN IR+  A VCM NL WRNSPLIMSQCGSKGS
Sbjct: 717  ESYKSGKLELLPGCNKAETLEAKITGTLNKIRDTTAEVCMTNLSWRNSPLIMSQCGSKGS 776

Query: 2443 PSNITQMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFVENSFYTGLTATEFF 2622
            P NI QM+ACVGQQSVGGRRA NGF+DR+LPHF R +  PDAKGFV+NSFYTGL  TEFF
Sbjct: 777  PINICQMVACVGQQSVGGRRAPNGFLDRTLPHFERGAKDPDAKGFVQNSFYTGLLPTEFF 836

Query: 2623 FHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRSASGGVVQFLYGDDGMD 2802
            FHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLS+ YD+TVR+ASG +VQF YGDDG+D
Sbjct: 837  FHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSVQYDSTVRNASGCIVQFTYGDDGLD 896

Query: 2803 PSRMEGKDGTPLNLDRLYMKVKATCPARGHSSLSPTEIFELVVARL-----SKHDMTPEG 2967
            P++ME K G PLN +RL+MK KATCP+ G  SL   +I + ++ R+     S+ D++   
Sbjct: 897  PAQMEEKTGFPLNFERLFMKAKATCPSEGQPSLKAEDI-DFIINRVIEENHSRSDISEME 955

Query: 2968 GCSDAFKKSLLDEEGFMQNKEGGFLGKCITSLKNTRRDLQLDGEKRGSESLEKVSANIAG 3147
             CS+ F+ SLL       NK     G     L +    LQ          ++ V ++ +G
Sbjct: 956  KCSETFEASLLR----FLNKRVYPTGMLSEKLNSENISLQ------DKSYVQSVVSSTSG 1005

Query: 3148 ITLQQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXXPGTQMTLKTFHFAGVA 3309
            IT QQL+VFL  C +RYH K+                 PGTQMTLKTFHFAGVA
Sbjct: 1006 ITQQQLEVFLNMCFARYHPKKIECGTAVGAIGAQSIGEPGTQMTLKTFHFAGVA 1059



 Score =  328 bits (842), Expect = 1e-86
 Identities = 176/305 (57%), Positives = 232/305 (76%), Gaps = 3/305 (0%)
 Frame = +3

Query: 3315 VPRIKEIINGAKNISTPIITATLECKNDAKSARLVQGCIEKTVLGEIAESMKIIFTSRQA 3494
            VPRI+EII+ AK I TP+IT  L+ K+   +AR+V+G IEKT+LGEIA+SMK+   +R A
Sbjct: 1067 VPRIREIIDAAKKIKTPVITTELQRKDCGITARIVKGRIEKTLLGEIAKSMKVSEMTRTA 1126

Query: 3495 CILVTLDIELIQRSQLKISAHSVQQSIWRHPKAKLKAQHVEVLNDRKLRIHAPVDDRTKI 3674
             I++ LD ++I+ +QL I A++V++SI   PK KLK Q + VLN +KL +    + R+K+
Sbjct: 1127 SIVIKLDTKVIEAAQLFIDAYTVKESILLTPKMKLKEQQIRVLNRQKLTVSLEAE-RSKL 1185

Query: 3675 HFELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHN---LLVEGTNLRAVMGTL 3845
             FE  +L++ L  V+V GI  VERAII  + +  GK+  +     L+VEGT   +V+G  
Sbjct: 1186 EFESWALQNKLKDVVVKGIKQVERAII--VDEANGKDPNQRKKLKLVVEGTGFLSVLGIQ 1243

Query: 3846 GVDGCNTTSNHIIEVQETLGIEAARKCIIDEINYTMKGHGMTIDIRHMMLLGDLMTSKGE 4025
            GVD  NT SNHI+EV + LGIE+AR+ IIDEI YTM GHGMTIDIRHMMLL DLMT KGE
Sbjct: 1244 GVDARNTKSNHIMEVFQVLGIESARRQIIDEIQYTMSGHGMTIDIRHMMLLADLMTFKGE 1303

Query: 4026 VLGITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGI 4205
            VLGITR+G++KM++SVLMLASFE+TADHLFNA VNGR D+IEGVSECI++GIPM+ GTG+
Sbjct: 1304 VLGITRYGVRKMRDSVLMLASFERTADHLFNAPVNGRVDRIEGVSECIMLGIPMRTGTGM 1363

Query: 4206 LKIRQ 4220
            +KI+Q
Sbjct: 1364 MKIKQ 1368


>tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
          Length = 1030

 Score = 1335 bits (3456), Expect = 0.0
 Identities = 666/1037 (64%), Positives = 800/1037 (77%), Gaps = 19/1037 (1%)
 Frame = +1

Query: 118  DAEIQFTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQDRKPKKNALLD 297
            + +++ TK+P++EDVG R+IKSI+FS++SG+EI K++E+QV+N+  YD+D  P  N LLD
Sbjct: 5    EEKLRCTKEPFIEDVGTRRIKSIRFSVLSGSEIRKSAEVQVWNNRIYDRDMTPVPNGLLD 64

Query: 298  SRMGPANKFITCATCHGSLTDCPGHYGYFHLILPVFNVGYFNAILNVLKCVCKSCARILL 477
             RMG   K   C TCHG  +DCPGH+GY  L LPVFNVG+FN IL+VLKC+CKSC+R+LL
Sbjct: 65   PRMGIPTKRGKCNTCHGEFSDCPGHFGYLKLALPVFNVGFFNCILDVLKCICKSCSRVLL 124

Query: 478  SERDRISYLKKMRNPKLEALQKTGLAKAILNKCKPKKCSRCGYINGVVKKSGTVMGIVHD 657
             E+DR  +LKKMRNP+ +ALQK+   K + +KCK   C RC Y NGVVKK    + +VHD
Sbjct: 125  IEKDRREFLKKMRNPRADALQKSATMKKVRDKCKLSCCPRCDYRNGVVKKGRAGLIVVHD 184

Query: 658  RSKLMDGVKEECEAAISKTKDSRTSFTVVYVLNPVRVLDLFRRILDQDCDLLYLSDRPEK 837
             SK++DG  EE + A+   K+ + S + V VL+P  VL LFRR++D+DC+LL L DRPEK
Sbjct: 185  CSKVLDGHTEELKNALQNKKE-KVSASSVLVLDPATVLSLFRRMIDEDCELLNLGDRPEK 243

Query: 838  LIITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTIIQANTSLRQDLHCTSPTSKCLAA 1017
            LI+T+I VPP+ IRPS  V   + SNED IT  L +I+  N+ L++ LH   P +KC   
Sbjct: 244  LIVTEIAVPPVPIRPSVVVGNSRTSNEDSITVILKSIVNTNSILKETLHTGGPFTKCFDC 303

Query: 1018 WELLQVEVAQYINSDVRGVPLSMQSSKPLRGFIQRLKGKQGRFRGNLSGKRVEYTARTVI 1197
            W+ LQ++V +Y+NSD   +P S       RG +QRLKGK GRFRGNLSGKR EYT RTVI
Sbjct: 304  WQYLQLQVVEYVNSDAPSLPESQH-----RGLVQRLKGKTGRFRGNLSGKRTEYTGRTVI 358

Query: 1198 SPDPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRKCVANGPQKYPGANFIRLASGSLQ 1377
            SPDPNLKITEV IP+L+A+VLTYPE VS YNIEKLR+C+ NGP KYPGANF+    G  Q
Sbjct: 359  SPDPNLKITEVAIPVLMARVLTYPERVSNYNIEKLRQCIRNGPFKYPGANFVTQPDGMKQ 418

Query: 1378 NLRYGRRKGYADALKYGDTVERHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNE 1557
            +L+YG R+  A  LK G  VERHLEDGDVVLFNRQPSLHRMSIM HRA+IMPWRTLRFNE
Sbjct: 419  SLKYGDRRITARDLKCGCIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNE 478

Query: 1558 SVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 1737
            SVCNPYNADFDGDEMN+HVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF
Sbjct: 479  SVCNPYNADFDGDEMNLHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 538

Query: 1738 LITRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNVLIRPHAQMRV 1917
            L+TR+DTFYDR+SF+L+CSY+GD M+ IDLPTPALIKPVELWTGKQLF+VL+RP+A  +V
Sbjct: 539  LVTRKDTFYDRSSFTLLCSYLGDGMENIDLPTPALIKPVELWTGKQLFSVLVRPNAHTKV 598

Query: 1918 FVNLTVFEKSYNK----------------GRETLCPNDGFVYFRNSELICGQLGKATLGN 2049
            F+NL V EK Y+K                GRET+CPNDG+VYFRNSEL+ GQ+GKATLGN
Sbjct: 599  FLNLAVQEKIYSKKKGKKEGGEEVKETMCGRETMCPNDGYVYFRNSELLSGQVGKATLGN 658

Query: 2050 GNKDGLFSVLLRDYDAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPGKSLSXXXXXXX 2229
            GNKDGL+SVLLRDY++HAAASCMNRLAK SAR+IGNHGFSIG+ DVQPG+ L+       
Sbjct: 659  GNKDGLYSVLLRDYNSHAAASCMNRLAKFSARFIGNHGFSIGVDDVQPGEHLNRQKKKEI 718

Query: 2230 XXXXXXXXXLIEHYKTGKLELQPGCDAAQTLEAEITGILNNIREKAATVCMENLHWRNSP 2409
                     LI  +  G L L PGC+AAQTLE  ITG+LN IR  A  VCM+ LHWRNSP
Sbjct: 719  DGGYKKCHDLISLFAKGALALHPGCNAAQTLEHNITGVLNEIRSIAGNVCMDTLHWRNSP 778

Query: 2410 LIMSQCGSKGSPSNITQMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFVENS 2589
            LIMSQCGSKGSP NI+QM+ACVGQQSVGGRRA +GF++R+LPHFP NS TP AKGFV NS
Sbjct: 779  LIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFLNRTLPHFPINSKTPAAKGFVANS 838

Query: 2590 FYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRSASGGV 2769
            FYTGLTATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+K LEDLS+ YD TVR+ASGG+
Sbjct: 839  FYTGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLMKGLEDLSVFYDQTVRNASGGI 898

Query: 2770 VQFLYGDDGMDPSRMEGKDGTPLNLDRLYMKVKATCPARGHSSLSPTEIFELVVARLSKH 2949
            VQFLYGDDGMDP++MEGKDG PLNLD+L+MKV ATCP RG  +LSP  I +++  +  +H
Sbjct: 899  VQFLYGDDGMDPAKMEGKDGMPLNLDQLFMKVMATCPQRGSDTLSPVGIKQMLEDKFLQH 958

Query: 2950 DMTPEGGCSDAFKKSLLDEEGFMQNKEGGFLGKCITSLKNTRRDLQLDG---EKRGSESL 3120
            D + +GGCS  FKK+L +           FL K I  +K TRR L L     EK+ S   
Sbjct: 959  DTSSDGGCSAEFKKNLTE-----------FLDKRIELMKCTRRALHLHEDHVEKKDSCLE 1007

Query: 3121 EKVSANIAGITLQQLQV 3171
            E ++A I+GI+ +QLQV
Sbjct: 1008 ESIAAIISGISAKQLQV 1024


>ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris]
            gi|561005141|gb|ESW04135.1| hypothetical protein
            PHAVU_011G070100g [Phaseolus vulgaris]
          Length = 1392

 Score = 1332 bits (3446), Expect = 0.0
 Identities = 676/1071 (63%), Positives = 814/1071 (76%), Gaps = 10/1071 (0%)
 Frame = +1

Query: 127  IQFTKQPYVEDVGPRKIKSIQFSMMSGTEIMKASELQVFNSGFYDQDRKPKKNALLDSRM 306
            I FTK+P++ED GPRKIK+++FSM+S +EI K  E+QV+   +YD  +KP    LLD RM
Sbjct: 9    ITFTKEPFMEDAGPRKIKNMKFSMLSDSEISKLGEVQVWKGSYYDSFKKPIHGGLLDPRM 68

Query: 307  GPANKFITCATCHGSLTDCPGHYGYFHLILPVFNVGYFNAILNVLKCVCKSCARILLSER 486
            GPANK + CATCHG+  DCPGHYGY +L LPVFNVGY  +I+ +LKC+CK CARILL E 
Sbjct: 69   GPANKSLGCATCHGNFHDCPGHYGYLNLALPVFNVGYLGSIVEILKCICKGCARILLDED 128

Query: 487  DRISYLKKMRNPKLEALQKTGLAKA-ILNKC-KPKKCSRCGYINGVVKKSGTVMGIVHDR 660
             R  +LKKMR+ K   L K    K  I+  C K   C RCGYING VKK    + I+HD 
Sbjct: 129  TRKKHLKKMRSSKKSELDKMDFVKVRIIKDCSKVVNCPRCGYINGSVKKLPASLIIMHDC 188

Query: 661  SKLMDGVKEECEAAISKTKDSRTSFTVVY-VLNPVRVLDLFRRILDQDCDLLYLSDRPEK 837
            SK  + + EE E+ +S+ KDS+ +  V   +LNP +VL LFR++LD+DC+LLY+++RPEK
Sbjct: 189  SKCKNNIVEELESTLSRIKDSKATANVSNRILNPFQVLSLFRKMLDEDCELLYVAERPEK 248

Query: 838  LIITDILVPPIAIRPSAFVDGGKNSNEDDITSKLNTIIQANTSLRQDLHCTSPTSKCLAA 1017
            LIIT+I+VPPIAIRPS  +D    SNE+DIT +L  IIQAN  LRQ+L  +S +SK L  
Sbjct: 249  LIITNIVVPPIAIRPSVVMDESL-SNENDITERLKNIIQANAVLRQELQESSVSSKFLDG 307

Query: 1018 WELLQVEVAQYINSDVRGVPLSMQSSKPLRGFIQRLKGKQGRFRGNLSGKRVEYTARTVI 1197
            WE+LQ EVAQ+INS+VRG+P  MQS+K L GF+QRLKGK GRFRGNLSGKRVEYT RTVI
Sbjct: 308  WEILQNEVAQFINSEVRGIPFYMQSTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTGRTVI 367

Query: 1198 SPDPNLKITEVGIPILIAQVLTYPELVSQYNIEKLRKCVANGPQKYPGANFIRLASGSLQ 1377
            SPDPNLKI+EV IPIL+A +LTYPE V+ +NIEKLR+CV NGP KYPGA  +R   G   
Sbjct: 368  SPDPNLKISEVAIPILMASILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLRRDGGHSW 427

Query: 1378 NLRYGRRKGYADALKYGDTVERHLEDGDVVLFNRQPSLHRMSIMSHRAKIMPWRTLRFNE 1557
            +L+   RK  AD L+ GD V+RHLEDGD+VLFNRQPSLHRMSIMSHRA+IMPWRTLRFNE
Sbjct: 428  SLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMPWRTLRFNE 487

Query: 1558 SVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLTSSF 1737
            SVCNPYNADFDGDEMN+HVPQTEEARTEA++LMGVQNNLCTPKNGEILVASTQDFLTSSF
Sbjct: 488  SVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLTSSF 547

Query: 1738 LITRRDTFYDRASFSLMCSYMGDAMDAIDLPTPALIKPVELWTGKQLFNVLIRPHAQMRV 1917
            L+TR+DTFYDR++F+ +C+++GD +D IDLPTPA++KPVELW+GKQLF++L+RPHA  +V
Sbjct: 548  LVTRKDTFYDRSAFTNICTFIGDGLDLIDLPTPAIVKPVELWSGKQLFSLLLRPHANFKV 607

Query: 1918 FVNLTVFEKSY----NKGRE--TLCPNDGFVYFRNSELICGQLGKATLGNGNKDGLFSVL 2079
            +VNLTV EK+Y    +K RE  TLCPNDGFVYFRN+ELI GQ+GK TLGNGNKDGLFSVL
Sbjct: 608  YVNLTVKEKTYTKLDDKKRELKTLCPNDGFVYFRNTELISGQIGKVTLGNGNKDGLFSVL 667

Query: 2080 LRDYDAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPGKSLSXXXXXXXXXXXXXXXXL 2259
            LRDY AHAAASCMNRLAKLSARWIGNHGFSIGI DVQP + L                  
Sbjct: 668  LRDYKAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILIKKKDETLSEGYKKCDNH 727

Query: 2260 IEHYKTGKLELQPGCDAAQTLEAEITGILNNIREKAATVCMENLHWRNSPLIMSQCGSKG 2439
            I+ +  GKLEL  GCDA QTLE +ITG+LN +R+ A  VCM+ LHWRNSPLIMSQCGSKG
Sbjct: 728  IQAFNKGKLELLAGCDAPQTLETQITGVLNGLRDMAGKVCMQTLHWRNSPLIMSQCGSKG 787

Query: 2440 SPSNITQMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFVENSFYTGLTATEF 2619
            SP NI+QM+ACVGQQSVGGRRA NGF+DRSLPHFP N+ TP AKGFV NSFY+GL+ATEF
Sbjct: 788  SPINISQMVACVGQQSVGGRRAPNGFLDRSLPHFPLNAKTPAAKGFVANSFYSGLSATEF 847

Query: 2620 FFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRSASGGVVQFLYGDDGM 2799
            FFHTMGGREGLVDTAVKTADTGYMSR+L+K++EDL +HYD TVR+A G +VQF YGDDGM
Sbjct: 848  FFHTMGGREGLVDTAVKTADTGYMSRQLMKSMEDLFLHYDYTVRNAGGSIVQFCYGDDGM 907

Query: 2800 DPSRMEGKDGTPLNLDRLYMKVKATCPARGHSS-LSPTEIFELVVARLSKHDMTPEGGCS 2976
            DP  MEGK+G PLN +RL++K KA CP +     LS +++ ++V  +LS      E G S
Sbjct: 908  DPGGMEGKNGKPLNFERLFLKSKAICPNKDDDEVLSSSDVCKVVQEKLS------EFGVS 961

Query: 2977 DAFKKSLLDEEGFMQNKEGGFLGKCITSLKNTRRDLQLDGEKRGSESLEKVSANIAGITL 3156
               +K +L E GF       F+    + +K+  +  +       S+ L+K    I+GIT 
Sbjct: 962  REVEKGVL-EVGF----SADFVQSLQSFIKDNTKLTEETFTDDNSQILKKFGERISGITR 1016

Query: 3157 QQLQVFLETCISRYHLKRXXXXXXXXXXXXXXXXXPGTQMTLKTFHFAGVA 3309
             QL+VFL  C+SRYH K+                 PGTQMTLKTFHFAGVA
Sbjct: 1017 AQLEVFLNICLSRYHSKKIEAGAPVGATGAHSIGEPGTQMTLKTFHFAGVA 1067



 Score =  350 bits (899), Expect = 3e-93
 Identities = 186/320 (58%), Positives = 242/320 (75%), Gaps = 1/320 (0%)
 Frame = +3

Query: 3315 VPRIKEIINGAKNISTPIITATLECKNDAKSARLVQGCIEKTVLGEIAESMKIIFTSRQA 3494
            VPR+KEI+NG K ISTPIITA LE  + A +AR+V+G IEKT LG++A+S+K++ TSR A
Sbjct: 1075 VPRVKEIMNGNKKISTPIITAILERTDCANTARIVKGRIEKTNLGQVAKSIKVVVTSRLA 1134

Query: 3495 CILVTLDIELIQRSQLKISAHSVQQSIWRHPKAKLKAQHVEVLNDRKLRIHAPVDDRTKI 3674
             +++TLD+E IQ + L I A+ V++SI +  KAKLK +H+++L+ +KLR+     DR+K+
Sbjct: 1135 SVVITLDMERIQDAHLNIDANIVKESILQTKKAKLKPEHIKILDVKKLRVVPQDGDRSKL 1194

Query: 3675 HFELHSLKSMLPKVIVMGIPTVERAIINKLKDKRGKETGEHNLLVEGTNLRAVMGTLGVD 3854
            HF+L+ LK++LP V+V GI T +R +I+K +DK  K   +  LLVEGT  R VMG  GVD
Sbjct: 1195 HFQLNYLKNLLPSVVVKGIKTADRVVISKEEDKITK-AEKFKLLVEGTGFREVMGVEGVD 1253

Query: 3855 GCNTTSNHIIEVQETLGIEAARKCIIDEINYTM-KGHGMTIDIRHMMLLGDLMTSKGEVL 4031
            GC T SNHI EV++TLGIEAAR+CI+ EI Y M   HGM ID RHMMLL D+MT+ G +L
Sbjct: 1254 GCKTVSNHIHEVRDTLGIEAARECIVKEIKYVMVDTHGMNIDTRHMMLLADVMTATGHIL 1313

Query: 4032 GITRFGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIIMGIPMQIGTGILK 4211
            GI RFGI KM +SVLMLASFE+TAD LF ASV GRDD I GVSE IIMGIP+ IGTG++K
Sbjct: 1314 GINRFGISKMGKSVLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPITIGTGMIK 1373

Query: 4212 IRQRLEHVPQLDYGPESIFS 4271
            ++QRLE +P L +G   I S
Sbjct: 1374 VKQRLE-LPDLPHGASPILS 1392