BLASTX nr result
ID: Papaver27_contig00015793
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver27_contig00015793
(3277 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 951 0.0
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin... 925 0.0
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-... 910 0.0
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub... 905 0.0
ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV su... 877 0.0
ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV su... 869 0.0
ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV su... 869 0.0
ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D sub... 869 0.0
ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D sub... 868 0.0
ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV su... 867 0.0
ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV su... 867 0.0
ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV su... 867 0.0
ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D sub... 866 0.0
ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Me... 863 0.0
ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV su... 862 0.0
ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D sub... 856 0.0
ref|XP_007158454.1| hypothetical protein PHAVU_002G153700g [Phas... 853 0.0
ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV su... 851 0.0
ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV su... 851 0.0
ref|XP_007158453.1| hypothetical protein PHAVU_002G153700g [Phas... 850 0.0
>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Vitis vinifera]
Length = 1560
Score = 951 bits (2459), Expect = 0.0
Identities = 526/1121 (46%), Positives = 710/1121 (63%), Gaps = 30/1121 (2%)
Frame = -1
Query: 3277 TPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXX 3098
TPN RV E+ + L+ GQ++IFD ++AYK+LVDF+ +ANEL RV DC
Sbjct: 269 TPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVDFRGTANELSCRVLDCLKTSKLRSEKS 328
Query: 3097 XXXXXXSFNNKFDFPNKKPDSSKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGIP 2918
+K S +G +W+K+V+LGK T++SFRM++VGDP+++L EIGIP
Sbjct: 329 T--------------SKDSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIP 374
Query: 2917 NDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVYR 2738
IAE L ++E LNSWNW+K+ N RLLEKG VRRKG A V + +D + GD +YR
Sbjct: 375 CHIAEELLISEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYR 434
Query: 2737 PLEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQ 2558
PL +GD+V+INRPPS+HQHS+IALSVK+LP SV S+NPL C P RGDFDGDCL Y+PQ
Sbjct: 435 PLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQ 494
Query: 2557 SIDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLEMFS 2378
S+DSRVEL E LS+S DSL+AA+L+ +D V L Q+Q
Sbjct: 495 SVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQ------ 548
Query: 2377 LHLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQ 2198
QLEM + +SPAI+KAP +WTGKQ
Sbjct: 549 ------------------------------QLEMFCPYQLQSPAIIKAPLLDTQVWTGKQ 578
Query: 2197 LLSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILF 2018
L SML+P FN+ FP+N SAWL+D D +++S+LV++ K LD L+
Sbjct: 579 LFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLFSSLVKDCQGKALDFLY 638
Query: 2017 SAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLINRTC 1838
+AQE+L EW+SMRG SVSLSDIYLS +S SR NM++EV GL A Q K L++ +
Sbjct: 639 AAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSS- 697
Query: 1837 MENLLRDSEDTHNCETFEVDDDNRLY-------DLTEINIGAYQDVFRDVQRLVYHYASK 1679
+N L S + N + V D L+ L + ++ A++ FRD+Q LVY YA+K
Sbjct: 698 -QNFLIGSGE--NNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKFRDIQNLVYQYANK 754
Query: 1678 ENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARNHRDFDTPG--- 1508
+NS+LAM+++GSKG+LLKLV Q LCLGLQHS PLSF++P LSC+A N + PG
Sbjct: 755 DNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQK--VPGLIQ 812
Query: 1507 --------SHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMR 1352
S+I YAV+ENSFL GL+PLEC+VHSV++RDSSF +NA++PGTL R++MF+MR
Sbjct: 813 NDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMR 872
Query: 1351 DLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTE--DEKSCQISTGSDRRCGGEPVGSLAA 1178
DLY+AYDGTVRNAYGNQLVQFSY + T ++ +E +C GG+PVGS++A
Sbjct: 873 DLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINEDTCAYD------MGGQPVGSISA 926
Query: 1177 CSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEY 998
C+ISEAAYSALD+P K+ + V+LFLSKKL++ +G EY
Sbjct: 927 CAISEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEY 986
Query: 997 GAIEVKSHLEKVLFSEVISDTAIVFSEEN-CQTHLSPWICHFHISKEEMQKKGLNVASIS 821
GA+EVK+HLEK+LFS+++S IVFS +N +TH SPW+CHFH+ +E +K+ L SI
Sbjct: 987 GALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSII 1046
Query: 820 SALEKNCCSNLSKQKFELPVMHLDSRS-HCSMAGPETSCIVGTVDI---EEGCSNPLAGV 653
AL C S ++ K LP + + S+ M ++ C TV I ++ C L V
Sbjct: 1047 DALYMKCNSARAESKINLPDLQITSKDCFVDMEKEDSDCFCITVSIVNSKKSCIQ-LDTV 1105
Query: 652 RDVMMPFLLGTVIKGFVEVEKVDIVWNDLPRGS-RTSSSGELCLRVSMARKFKNLKFWSI 476
RD+++PFLLG V+KG ++V+KVDI+WND P SSSG L LRV ++ FW +
Sbjct: 1106 RDLVIPFLLGAVVKGLLDVKKVDILWNDNPDSDVLKSSSGRLYLRVYVSGDCGKKNFWGV 1165
Query: 475 IKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLL 296
+ +ACL IMD+IDWERS+P++I+D+ YGI+A W +F SLKS SDIGK++L EHLLL
Sbjct: 1166 LMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLL 1225
Query: 295 IADRLSFTGEFLGLTAKGLITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTL 125
+A LS TGEF+GL AKG+ Q TS SPF Q CFS P F++A K D+L G+L
Sbjct: 1226 VASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSL 1285
Query: 124 DAVAWGKKVPIGTGGNFEIIYSQKDYQVDK-LDIFNTLSTQ 5
DA+AWGK +G+GG+F+I+YS K +++ + DI+ L +Q
Sbjct: 1286 DALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQ 1326
>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
putative [Ricinus communis]
Length = 1475
Score = 925 bits (2391), Expect = 0.0
Identities = 514/1098 (46%), Positives = 700/1098 (63%), Gaps = 23/1098 (2%)
Frame = -1
Query: 3277 TPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXX 3098
TPNC RV E+ + + GQ ++FDDRT+AYK++VDF+ A EL RV DC
Sbjct: 231 TPNCHRVTEVTHAFSNGQRLVFDDRTRAYKKMVDFRGIAKELSFRVLDCLKTSKINPDKS 290
Query: 3097 XXXXXXSFNNKFDFPNKKPD---SSKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEI 2927
N+ + +K + SS +G +W+KDV+LGK DNSFRMV+VGDP IK EI
Sbjct: 291 VN------NDDYMALQRKMNDSSSSSSGLRWIKDVVLGKRNDNSFRMVVVGDPNIKFSEI 344
Query: 2926 GIPNDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDA 2747
GIP IAERL+++E L +WNW KLN C RLLEKG + VRR+GK V +T +L+IGD
Sbjct: 345 GIPCPIAERLQISEHLTTWNWDKLNTCCEVRLLEKGDMHVRREGKLVRVRRTKELRIGDI 404
Query: 2746 VYRPLEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCY 2567
+YRPL +GD V+INRPPS+HQHS+IALSVK+LP SV ++NPLIC P RGDFDGDCL Y
Sbjct: 405 IYRPLNDGDTVLINRPPSIHQHSLIALSVKVLPATSVLAINPLICAPFRGDFDGDCLHGY 464
Query: 2566 VPQSIDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLE 2387
VPQS+D+RVELRE LS S DSL AA+L+ +D V L Q+QQ
Sbjct: 465 VPQSVDTRVELRELVALDKQLINVQNGRNLLSFSQDSLVAAHLVMEDGVLLSLQQMQQ-- 522
Query: 2386 MFSLHLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWT 2207
L+M H SPA+ KAP+ WT
Sbjct: 523 ----------------------------------LQMFCPHQLFSPAVRKAPSLNGCAWT 548
Query: 2206 GKQLLSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLD 2027
GKQL+SML+P+ F+ + P + WL+DTD +++ +L++ D+ LD
Sbjct: 549 GKQLISMLLPRGFDHECPSSDVYIRDGELISSEGSF-WLRDTDGNLFQSLIKQCQDQVLD 607
Query: 2026 ILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLIN 1847
L+ AQE+L EW+SMRG SVSLSD+YL +S SR NM++EV GLQ+A K F+++
Sbjct: 608 FLYIAQEVLCEWLSMRGLSVSLSDLYLCPDSDSRENMMDEVLFGLQDAKGTCNMKQFMVD 667
Query: 1846 RTCMENLLRDSEDTHNCETFEVD----DDNRLYDLTEINIGAYQDVFRDVQRLVYHYASK 1679
+C + L ED F+V+ + R L++ ++ A++ VFRD+Q L Y YASK
Sbjct: 668 -SCRDFLASIDEDEQYSVNFDVEHLCHEKQRSAALSQASVDAFKHVFRDIQTLGYKYASK 726
Query: 1678 ENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARNHRDFDTP---- 1511
+N+++AM +SGSKG+LLK+V S+CLGLQHS PLSFR+P LSC A N + +
Sbjct: 727 DNALMAMFKSGSKGNLLKVVQHSMCLGLQHSLVPLSFRMPLQLSCDAWNKQKAENAVECA 786
Query: 1510 GSHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYD 1331
S+I AV+E FL+GL+PLEC+VHSV++R+SSF +NA++PGTL R++MF+MRD++ AYD
Sbjct: 787 RSYIPSAVVEGCFLTGLNPLECFVHSVTSRESSFSDNADLPGTLTRRLMFFMRDVHAAYD 846
Query: 1330 GTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGSDRRCGGEPVGSLAACSISEAAYS 1151
G+VR+AYGNQL+QFSY + D+ S E + +I D G +PVGSLAACSISEAAYS
Sbjct: 847 GSVRSAYGNQLIQFSYNI-DEGRSAETYGTAKIVDNYDGMAG-KPVGSLAACSISEAAYS 904
Query: 1150 ALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHL 971
ALD+P K+ ++++LFLS+KL R +G EYGA++V+ HL
Sbjct: 905 ALDQPISLLEKSPLLNLKNVLECGLKKSNAHKSMSLFLSEKLGRRRHGFEYGALKVQDHL 964
Query: 970 EKVLFSEVISDTAIVFSEEN-CQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCS 794
E++LFS+++S + I+FS ++ +T SPW+CHFH+ KE M+K+ LNV SI + L C S
Sbjct: 965 ERLLFSDIVSVSRIIFSSQSESKTCFSPWVCHFHVYKEIMKKRNLNVDSIINILNGRCKS 1024
Query: 793 NLSKQKFELPVMHLDSRSHCSMAG-----PETSCIVGT-VDIEEGCSNPLAGVRDVMMPF 632
N + LP + + +S CS+A ET CI T V+ + S LA ++D+M+PF
Sbjct: 1025 NTN-----LPNVQISCKS-CSIADNHREKEETLCITVTIVERSKNSSTRLATIQDLMIPF 1078
Query: 631 LLGTVIKGFVEVEKVDIVWNDLPRGSRTSSS--GELCLRVSMARKFKNLKFWSIIKNACL 458
LL TV+KG +E+ KVDI+W D PR S+T + GEL LRVSM+ + + W+++ + CL
Sbjct: 1079 LLETVLKGLMEINKVDILWKDWPRISKTHNQPYGELYLRVSMSADSEKTRLWNLLMDYCL 1138
Query: 457 PIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLS 278
PIMD+IDW S P+++ D S AYGI+A W F + L+S SD+GKS+L EH+LL+A+ LS
Sbjct: 1139 PIMDMIDWTCSRPDNVRDFSLAYGIDAGWKFFLQRLESAISDVGKSVLPEHMLLVANCLS 1198
Query: 277 FTGEFLGLTAKGLITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWG 107
TGEF+GL AKG Q S SPF QACFS P F++AAK KDDL G+LDA+AWG
Sbjct: 1199 VTGEFVGLNAKGWKRQREDASVSSPFVQACFSSPGNCFIKAAKAGVKDDLQGSLDALAWG 1258
Query: 106 KKVPIGTGGNFEIIYSQK 53
K +GT G F+I+YS K
Sbjct: 1259 KVPSVGT-GQFDIVYSGK 1275
>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
polymerase II subunit RPB1-B, putative [Theobroma cacao]
Length = 1484
Score = 910 bits (2352), Expect = 0.0
Identities = 499/1120 (44%), Positives = 697/1120 (62%), Gaps = 30/1120 (2%)
Frame = -1
Query: 3277 TPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXX 3098
TPN RV E+ + + GQ +IFD RT+ YK+L DF+ ANEL S V +C
Sbjct: 238 TPNSHRVTEIMHASSNGQRLIFDQRTRVYKKLADFRGIANELSSHVLECLKISKLHLEKP 297
Query: 3097 XXXXXXSFNNKFDFPNKKPDSSKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGIP 2918
+ NK S+ +G +++KDV+LGK D+ FRMV+ G+P +KL EI IP
Sbjct: 298 SNEESALVLAQKR--NKDSASNMSGLRYMKDVILGKRNDHCFRMVLTGNPNLKLSEISIP 355
Query: 2917 NDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVYR 2738
+AERL++ E LN+WN ++L C + RLLEKG + VRR+G+ + + L++GD ++R
Sbjct: 356 CHVAERLQIAEQLNNWNEERLKACCDLRLLEKGEIHVRREGRLVRIRHNEKLQVGDTIFR 415
Query: 2737 PLEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQ 2558
PL GD+++INRPPS+HQHS+IALSVK+LP SV S+NPLIC P RGDFDGDCL YVPQ
Sbjct: 416 PLNNGDIILINRPPSIHQHSLIALSVKVLPVSSVVSINPLICSPFRGDFDGDCLHGYVPQ 475
Query: 2557 SIDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLEMFS 2378
SI +RVEL E LS+SHDSL AAYL+++D V L Q+Q
Sbjct: 476 SIKARVELIELVSLNRQLINGQSGRNLLSLSHDSLTAAYLVKEDGVLLNLFQMQ------ 529
Query: 2377 LHLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQ 2198
QLEM +H PAIVKAP + S+WTGKQ
Sbjct: 530 ------------------------------QLEMFCPNHSPFPAIVKAPLLRSSVWTGKQ 559
Query: 2197 LLSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILF 2018
LLSML P +F++DF N S WL+D D +++ +L+++Y K LD L+
Sbjct: 560 LLSMLFPLEFDYDFTPNDVVIRNGELISSSEGSTWLRDADGNLFQSLIKHYQGKVLDFLY 619
Query: 2017 SAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLINRTC 1838
+AQE+L EW+SMRG SVSLSD+YLS +S S+ NM++E+ GLQE Q K +++
Sbjct: 620 AAQEVLCEWLSMRGLSVSLSDLYLSSDSNSQKNMMDEIFCGLQEIEQTCNFKQLMVDSN- 678
Query: 1837 MENLLRDSEDTHNCETFEVD----DDNRLYDLTEINIGAYQDVFRDVQRLVYHYASKENS 1670
+ L+ E+ + +V+ + R L++ ++ +++ VFRD+Q L+Y YA+K+NS
Sbjct: 679 HDFLVGHDEEVDSFMALDVEQMCYEKQRSAALSQASVDSFKQVFRDIQNLLYKYANKDNS 738
Query: 1669 MLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARNHRDF---------- 1520
+L M ++GSKG+LLKLV SLCLGLQHS PLSFR P LSC+A N++
Sbjct: 739 LLTMFKAGSKGNLLKLVQHSLCLGLQHSLVPLSFRFPHQLSCAAWNNQKSHGLTQKVDDT 798
Query: 1519 -DTPGSHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLY 1343
++ ++I YAV+E+SF++GL+PLE +VHSV++RDSSF +NA++PGTL R++MF+MRDLY
Sbjct: 799 AESAKNYIPYAVVESSFMTGLNPLESFVHSVTSRDSSFSDNADLPGTLSRRLMFFMRDLY 858
Query: 1342 LAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGSD--RRCGGEPVGSLAACSI 1169
AYDGTVRN+YG+ +VQF Y + +S IS S GG+PVGSL+AC+I
Sbjct: 859 TAYDGTVRNSYGDLVVQFCYDIDKDASSPTSCAHGLISESSTIPEGIGGQPVGSLSACAI 918
Query: 1168 SEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAI 989
SEAAYSALD+P ++ Q +TLFLS KL R +GSEY A+
Sbjct: 919 SEAAYSALDQPVSLLETSPLLNLKRVVECGSKRSNADQTMTLFLSNKLGRKRHGSEYAAL 978
Query: 988 EVKSHLEKVLFSEVISDTAIVFSEENC-QTHLSPWICHFHISKEEMQKKGLNVASISSAL 812
EVK+HLE++ FS++++ +I+FS + + H +PW+CHFH+ K+ M+++ L V SI +L
Sbjct: 979 EVKNHLERLTFSDIVTTVSIIFSPQMYRENHFTPWVCHFHVCKDTMKRRQLKVQSIIDSL 1038
Query: 811 EKNCCSNLSKQKFELPVMHLDSR----SHCSMAGPE-TSCIVGT-VDIEEGCSNPLAGVR 650
+C + + K LP M + S SH M + T CI T V+ + L +R
Sbjct: 1039 HMHCTTAKTMWKISLPDMQITSNGRACSHIDMPNEDDTFCITVTIVEYSKSSHMELDVIR 1098
Query: 649 DVMMPFLLGTVIKGFVEVEKVDIVWNDLPRGSRT--SSSGELCLRVSMARKFKNLKFWSI 476
D+++P+LL VIKGF E++KVDI+W D + S+ SS GEL LRV ++ F K W +
Sbjct: 1099 DMVIPYLLEAVIKGFPEIKKVDILWKDRLKVSKPHKSSCGELYLRVFVSGDFGITKLWGV 1158
Query: 475 IKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLL 296
+ N CL IMD+IDW RS+P++IN + AYGI+A W F +LKS SD GK+IL EHLL+
Sbjct: 1159 LMNDCLQIMDMIDWTRSHPDNINQLCLAYGIDAGWKFFLNNLKSAISDTGKTILNEHLLV 1218
Query: 295 IADRLSFTGEFLGLTAKGLITQTS---TPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTL 125
+A+ LS TGEF+GL +KGL Q SPF QACFS P +FV+AAK A DDL GT+
Sbjct: 1219 VANCLSATGEFVGLNSKGLRQQREHAYVSSPFMQACFSNPSASFVKAAKTGASDDLQGTI 1278
Query: 124 DAVAWGKKVPIGTGGNFEIIYSQKDYQV-DKLDIFNTLST 8
DA+AWG+ IGTGG F+IIYS KD ++ + +D++ L +
Sbjct: 1279 DALAWGRIPHIGTGGQFDIIYSVKDQRLAEPVDVYKLLGS 1318
>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
1-like [Cucumis sativus]
Length = 1469
Score = 905 bits (2340), Expect = 0.0
Identities = 497/1119 (44%), Positives = 695/1119 (62%), Gaps = 28/1119 (2%)
Frame = -1
Query: 3277 TPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXX 3098
TPN RV EMA+ + GQ +IFD+RT+AYK++VDF+ +ANELGSRV DC
Sbjct: 236 TPNSHRVTEMAHSFSNGQRLIFDERTRAYKKVVDFRGTANELGSRVLDCLKISKAIYNIF 295
Query: 3097 XXXXXXSFNNKFDFPNKKPDSSKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGIP 2918
N + K +S +G +W+KDV+LGK +D+ FRMV+VGDP I+L EIGIP
Sbjct: 296 VFCLNHV--NYYQKKIKDTATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIP 353
Query: 2917 NDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVYR 2738
+AERL+++E L+SWN +KL+ L+EKG + VRR+G+ V +L +GD +YR
Sbjct: 354 CHVAERLQISEHLSSWNMKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYR 413
Query: 2737 PLEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQ 2558
PL +GD+V++NRPPS+HQHS+IALSVK+LP +V SLNPL C P RGDFDGDCL YVPQ
Sbjct: 414 PLADGDIVLVNRPPSIHQHSLIALSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQ 473
Query: 2557 SIDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLEMFS 2378
S+++RVE+RE LS+SHDSL AA+L+ +D V L Q+QQ
Sbjct: 474 SLEARVEVRELVSLDKQLTNGQSGRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQ----- 528
Query: 2377 LHLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQ 2198
L+ML H PAIVK+P + WTGKQ
Sbjct: 529 -------------------------------LQMLTLHQLLPPAIVKSPLLRNCAWTGKQ 557
Query: 2197 LLSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILF 2018
L S+L+P DF++ P + WL+D+ +++ L+ + KTLD L
Sbjct: 558 LFSILLPPDFDYSSPSHNVFIEKGELISSEGSY-WLRDSGRNLFQALIEHCEGKTLDYLR 616
Query: 2017 SAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLINRTC 1838
AQ +L EW+S RG SVSLSD+YLS +S S NM++++ GLQEA + K +++ +
Sbjct: 617 DAQGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCGLQEAEETCNLKQLMVD-SH 675
Query: 1837 MENLLRDSEDTHNCETFEVD----DDNRLYDLTEINIGAYQDVFRDVQRLVYHYASKENS 1670
E L+ + ED + + V+ + + L + ++ A++ VFRD+Q LVY Y+ K+NS
Sbjct: 676 KEILIGNDEDNQHLLSIAVERLIYEKQKSAALNQASVDAFKKVFRDIQNLVYKYSGKDNS 735
Query: 1669 MLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARNHRDF---------- 1520
+L M ++GSKG+L+KLV S+CLGLQHS LSF +P LSC+A N +
Sbjct: 736 LLTMFKAGSKGNLMKLVQHSMCLGLQHSLVTLSFSLPHKLSCAAWNSQKMPRYIQKDGLP 795
Query: 1519 DTPGSHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYL 1340
D S I YAV+ENSFLSGL+P EC+ HSV+NRDSSF +NAE+PGTL RK+ F MRD+Y
Sbjct: 796 DRTQSFIPYAVVENSFLSGLNPFECFAHSVTNRDSSFSDNAEVPGTLTRKLTFLMRDIYT 855
Query: 1339 AYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGSDRRCGGEPVGSLAACSISEA 1160
AYDGTVRNAYGNQLVQF Y + + +E E + DR GG PVGSLAAC+ISEA
Sbjct: 856 AYDGTVRNAYGNQLVQFCYDIDRPTSESESE-----NNNRDRGIGGHPVGSLAACAISEA 910
Query: 1159 AYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVK 980
AYSALD+P + + Q +LFLS+KL + +YG EYGA+ VK
Sbjct: 911 AYSALDQPISLLEASPLLNLKRVLECGSKRNSTKQTFSLFLSEKLSKRSYGFEYGALGVK 970
Query: 979 SHLEKVLFSEVISDTAIVFSE-ENCQTHLSPWICHFHISKEEMQKKGLNVASISSALEKN 803
+HLE+V+F +++S I+FS + + H SPW+CHFH+ KE ++K+ L + S+ +L
Sbjct: 971 NHLERVMFKDIVSSVMIIFSPLPSRKKHFSPWVCHFHVCKEILKKRRLKMNSVIHSLNMR 1030
Query: 802 CCSNLSKQKFELPVMHLDSRSHCSMAGP-----ETSCIVGTVDIEEGCSN---PLAGVRD 647
C S + + LP + + ++ C +A +T C+ TV I E N L ++D
Sbjct: 1031 CDSMRQEGRMNLPSLQIITQD-CPLADSLTEDGDTVCL--TVTIAENTKNSFLQLDFIQD 1087
Query: 646 VMMPFLLGTVIKGFVEVEKVDIVWNDLPRGSR-TSSSGELCLRVSMARKFKNLKFWSIIK 470
+++ FLLGTVI+GF E+++VDI WND P+ + S GEL LRV+M+ + N +FW+ +
Sbjct: 1088 LLIHFLLGTVIRGFTEIDRVDITWNDRPKVPKPRCSHGELYLRVTMSGE-GNSRFWATLM 1146
Query: 469 NACLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIA 290
N CLPIMDLIDW RS+P++ + + AYGI++ W +F SL+S T D+GK+I EHLLL++
Sbjct: 1147 NNCLPIMDLIDWTRSHPDNTHSLCLAYGIDSGWKYFLNSLESATLDVGKTIRLEHLLLVS 1206
Query: 289 DRLSFTGEFLGLTAKGLITQTS---TPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDA 119
+ LS TGEF+GL KGL Q +PF QACFS P ++AAK KD+LSG+LDA
Sbjct: 1207 NSLSATGEFVGLNVKGLTHQREHALVKTPFMQACFSSPGACMIKAAKAGIKDNLSGSLDA 1266
Query: 118 VAWGKKVPIGTGGNFEIIYSQKDYQVDK-LDIFNTLSTQ 5
+AWG+ +GTGG F+I+YS K ++++K +D++N L Q
Sbjct: 1267 LAWGRMPSLGTGGQFDILYSGKGHELNKPVDVYNLLGGQ 1305
>ref|XP_006590533.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Glycine
max]
Length = 1369
Score = 877 bits (2266), Expect = 0.0
Identities = 492/1114 (44%), Positives = 688/1114 (61%), Gaps = 39/1114 (3%)
Frame = -1
Query: 3277 TPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXX 3098
TPNC RV E+ +++G + FDDRT++ K+LVDF+ + NEL SRV DC
Sbjct: 135 TPNCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDFRGTPNELSSRVLDCLRISKLNPDKT 194
Query: 3097 XXXXXXSFNNKFDFPNKKPDSSKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGIP 2918
+ N + +G +W+KDV+LGK D+S R V+VGDP ++L E+GIP
Sbjct: 195 PNSIFADIQQRKIGENA---CNSSGLRWIKDVVLGKRNDSSLRTVVVGDPDLELSEVGIP 251
Query: 2917 NDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVYR 2738
IAE L+V+E +N N +KL C RLLEKG + V R G K ++K +DL+IGD +YR
Sbjct: 252 CHIAESLQVSEYVNRQNREKLLYCCELRLLEKGKIDVCRNGSKVHLYKKEDLQIGDKIYR 311
Query: 2737 PLEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQ 2558
PL +GD V+INRPPS+HQHS+IAL+V++LP SV +NPL C PLRGDFDGDCL Y+PQ
Sbjct: 312 PLADGDKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQ 371
Query: 2557 SIDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLEMFS 2378
S+ +R+EL E LS+S DSL AAYLL +D V L Q+QQL+M S
Sbjct: 372 SVTARIELNELVALDRQLINGQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMLS 431
Query: 2377 LHLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQ 2198
+ DK + PA+VKAP+ S+W+GKQ
Sbjct: 432 I-----------------SDKRLI-----------------PPAVVKAPSSNSSLWSGKQ 457
Query: 2197 LLSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILF 2018
+ SML+P DF++ FP + S WL+D+D +++ +LV +Y KTL+ L+
Sbjct: 458 IFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQGKTLNFLY 517
Query: 2017 SAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLINRTC 1838
+AQ++L EW+SM GFSVSLSD+YLS +S +R NM+EE+ GLQ+A QA K L++ C
Sbjct: 518 TAQKVLCEWLSMTGFSVSLSDLYLSSDSYARKNMIEEIFYGLQDAEQACNFKQLLLDCYC 577
Query: 1837 MENLLRDSEDTHNCETFEVDDDNRLYD------LTEINIGAYQDVFRDVQRLVYHYASKE 1676
+ L +++ N T VD D Y+ L++ ++ A++ VFR++Q L YA K+
Sbjct: 578 -DFLSGSIQESENAIT--VDADRLNYERQISAALSQASVDAFRQVFRNIQSLADKYACKD 634
Query: 1675 NSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARNHRDF-------- 1520
N+ LAM ++GSKG+LLKLV S+CLG+Q+S LS+R+P LSC+A N + +
Sbjct: 635 NAFLAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKWLDSIQMSS 694
Query: 1519 ---DTPGSHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRD 1349
++ S+I YAV+E+SFL+GL+PLEC+VHSV+NRDSSF ++A++PGTL R++MF+MRD
Sbjct: 695 GTLESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRD 754
Query: 1348 LYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGSDRRCGGEPVGSLAACSI 1169
L+ AYDGTVRN YGNQL+QFSY + E++ SC + GGEPVG+++AC+I
Sbjct: 755 LHDAYDGTVRNLYGNQLIQFSYDI-------EEDSSCD-KGFQEYAIGGEPVGAISACAI 806
Query: 1168 SEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAI 989
SEAAYSAL +P K Q V+LFLS+KL + +G EY A+
Sbjct: 807 SEAAYSALGQPVSLLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAAL 866
Query: 988 EVKSHLEKVLFSEVISDTAIVFS--EENCQTHLSPWICHFHISKEEMQKKGLNVASISSA 815
EVK++LE++LFS ++S I+F+ + + Q SPW+CHFH+ KE + ++ L V SI +
Sbjct: 867 EVKNYLERLLFSNIVSTVMIIFTPHDGSSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDS 926
Query: 814 LEKNCCSNLSKQKFELPVMHLDSRSHCS-----MAGPETS--------CIVGTVDIEEGC 674
L + S K + + S CS G +TS CI TV I E
Sbjct: 927 LYQRYYSQRKDSKVCFTNLKISSNRKCSADSMAKEGEDTSIDKKEGDDCI--TVTIVENS 984
Query: 673 SNP--LAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLP--RGSRTSSSGELCLRVSMAR 506
NP L VRD+++PFLLGT IKGF++V+KVD++WN+ + S SGEL LRV+++
Sbjct: 985 KNPIQLDSVRDLVIPFLLGTAIKGFLDVKKVDVLWNNQSKVKNSCNGFSGELYLRVTLSS 1044
Query: 505 KFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIG 326
+ +FW ++ N C IM +IDW RS+P++IN S AYGI+A W +FF SL S TSD G
Sbjct: 1045 EGSRGRFWGVLLNLCHKIMHIIDWTRSHPDNINHFSSAYGIDAGWQYFFNSLASATSDTG 1104
Query: 325 KSILEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSPFNQACFSRPLFNFVQAAKD 155
KSIL +HL L+A+ LS +GEF+GL AKG+ Q S SPF QACF+ P F++AAK
Sbjct: 1105 KSILPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKS 1164
Query: 154 EAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQK 53
D+L G+LDA+AWG + +GT G F+IIYS+K
Sbjct: 1165 GVTDNLQGSLDALAWGNCLSMGTSGMFDIIYSEK 1198
>ref|XP_006573757.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X4
[Glycine max]
Length = 1381
Score = 869 bits (2245), Expect = 0.0
Identities = 488/1125 (43%), Positives = 688/1125 (61%), Gaps = 37/1125 (3%)
Frame = -1
Query: 3277 TPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXX 3098
TPNC RV E+ +++G + FDDRT++ K+LVDF+ +ANEL SRV DC
Sbjct: 144 TPNCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDFRGTANELSSRVLDCLRISKLNPDKT 203
Query: 3097 XXXXXXSFNNKFDFPNKKPDSSKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGIP 2918
+ N + +G +W+KDV+LGK D+SFR V+VGDP ++L EIGIP
Sbjct: 204 PNSIFADIQQRKIGENA---FNSSGLRWIKDVVLGKRNDSSFRTVVVGDPDLELSEIGIP 260
Query: 2917 NDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVYR 2738
IAE L+V+E +N N +KL C LLEKG + V RKG ++K +DL+IGD YR
Sbjct: 261 CHIAESLQVSEYVNRQNREKLLYCCELHLLEKGKINVCRKGSIVHLYKKEDLQIGDKFYR 320
Query: 2737 PLEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQ 2558
PL +GD V+INRPPS+HQHS+I+L+V++LP SV +NPL C PLRGDFDGDCL Y+PQ
Sbjct: 321 PLADGDKVLINRPPSIHQHSMISLTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQ 380
Query: 2557 SIDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLEMFS 2378
S+ +R+EL E LS+S DSL AAYLL +D V L Q+QQL+M S
Sbjct: 381 SVTARIELNELVALDRQLINGQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMLS 440
Query: 2377 LHLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQ 2198
+++ PA+VKAP+ S+W GKQ
Sbjct: 441 ----------------------------------ISNKRLIPPAVVKAPSSNSSLWNGKQ 466
Query: 2197 LLSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILF 2018
L SML+P DF++ FP + S WL+D+D +++ +LV +Y KTL+ L+
Sbjct: 467 LFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQGKTLNFLY 526
Query: 2017 SAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLINRTC 1838
+AQ++L EW+SM GFSVSLSD+YLS +S +R NM+EE+ GLQ+A +A K L++ C
Sbjct: 527 AAQKVLCEWLSMTGFSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQLLLDYYC 586
Query: 1837 --MENLLRDSEDTHNCETFEVDDDNRLY-DLTEINIGAYQDVFRDVQRLVYHYASKENSM 1667
+ L++SE+ ++ + ++ L++ ++ A++ VFR++Q L YA K NS
Sbjct: 587 DFLSGSLQESENAITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKYACKGNSF 646
Query: 1666 LAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARNHRDF----------- 1520
LAM ++GSKG+LLKLV S+CLG+Q+S LS+R+P LSC+ N + +
Sbjct: 647 LAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCADWNSQKWVDSIQMSSGTL 706
Query: 1519 DTPGSHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYL 1340
++ S+I YAV+E+SFL+GL+PLEC+VHSV+NRDSSF ++A++PGTL R++MF+MRDLY
Sbjct: 707 ESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLYD 766
Query: 1339 AYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGSDRRCGGEPVGSLAACSISEA 1160
AYDGTVRN YGNQL+QFSY + E++ SC GGE VG+++AC+ISEA
Sbjct: 767 AYDGTVRNLYGNQLIQFSYDI-------EEDSSCN-KGFQQYALGGESVGAISACAISEA 818
Query: 1159 AYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVK 980
AYSAL +P K Q V+LFLS+KL + +G EY A+EVK
Sbjct: 819 AYSALGQPVSLLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVK 878
Query: 979 SHLEKVLFSEVISDTAIVFS--EENCQTHLSPWICHFHISKEEMQKKGLNVASISSALEK 806
++LE++LFS ++S I+F+ + Q SPW+CHFH+ KE + ++ L V SI +L +
Sbjct: 879 NYLERLLFSNIVSKVMIIFTPHDSRSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQ 938
Query: 805 NCCSNLSKQKFELPVMHLDSRSHCS-----MAGPETS--------CIVGTVDIEEGCSNP 665
S K + + S CS G +TS CI+ V I E NP
Sbjct: 939 RYYSQRKDSKVCFTNLKISSSRKCSADSMVKEGEDTSIDKEEGDDCIM--VTIVENSKNP 996
Query: 664 --LAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPR--GSRTSSSGELCLRVSMARKFK 497
L VRD+++PFLLGT I+GF++V+KVDI+WN+ + SR SGEL LRV+++ +
Sbjct: 997 IQLDSVRDLVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGS 1056
Query: 496 NLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSI 317
+FW ++ C IM +IDW RS+ ++IN S AYGI+A W +FF SL TSD GKSI
Sbjct: 1057 RGRFWGVLLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSI 1116
Query: 316 LEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAK 146
L +HL L+A+ LS +GEF+GL AKG+ Q S SPF QACF+ P F++AAK A
Sbjct: 1117 LPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGAT 1176
Query: 145 DDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQVDK-LDIFNTL 14
D+L G+LD +AWG + +GT G F++IYS+K +QV K +D++ L
Sbjct: 1177 DNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKGHQVAKSVDVYELL 1221
>ref|XP_006573754.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Glycine max]
Length = 1458
Score = 869 bits (2245), Expect = 0.0
Identities = 488/1125 (43%), Positives = 688/1125 (61%), Gaps = 37/1125 (3%)
Frame = -1
Query: 3277 TPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXX 3098
TPNC RV E+ +++G + FDDRT++ K+LVDF+ +ANEL SRV DC
Sbjct: 221 TPNCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDFRGTANELSSRVLDCLRISKLNPDKT 280
Query: 3097 XXXXXXSFNNKFDFPNKKPDSSKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGIP 2918
+ N + +G +W+KDV+LGK D+SFR V+VGDP ++L EIGIP
Sbjct: 281 PNSIFADIQQRKIGENA---FNSSGLRWIKDVVLGKRNDSSFRTVVVGDPDLELSEIGIP 337
Query: 2917 NDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVYR 2738
IAE L+V+E +N N +KL C LLEKG + V RKG ++K +DL+IGD YR
Sbjct: 338 CHIAESLQVSEYVNRQNREKLLYCCELHLLEKGKINVCRKGSIVHLYKKEDLQIGDKFYR 397
Query: 2737 PLEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQ 2558
PL +GD V+INRPPS+HQHS+I+L+V++LP SV +NPL C PLRGDFDGDCL Y+PQ
Sbjct: 398 PLADGDKVLINRPPSIHQHSMISLTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQ 457
Query: 2557 SIDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLEMFS 2378
S+ +R+EL E LS+S DSL AAYLL +D V L Q+QQL+M S
Sbjct: 458 SVTARIELNELVALDRQLINGQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMLS 517
Query: 2377 LHLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQ 2198
+++ PA+VKAP+ S+W GKQ
Sbjct: 518 ----------------------------------ISNKRLIPPAVVKAPSSNSSLWNGKQ 543
Query: 2197 LLSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILF 2018
L SML+P DF++ FP + S WL+D+D +++ +LV +Y KTL+ L+
Sbjct: 544 LFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQGKTLNFLY 603
Query: 2017 SAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLINRTC 1838
+AQ++L EW+SM GFSVSLSD+YLS +S +R NM+EE+ GLQ+A +A K L++ C
Sbjct: 604 AAQKVLCEWLSMTGFSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQLLLDYYC 663
Query: 1837 --MENLLRDSEDTHNCETFEVDDDNRLY-DLTEINIGAYQDVFRDVQRLVYHYASKENSM 1667
+ L++SE+ ++ + ++ L++ ++ A++ VFR++Q L YA K NS
Sbjct: 664 DFLSGSLQESENAITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKYACKGNSF 723
Query: 1666 LAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARNHRDF----------- 1520
LAM ++GSKG+LLKLV S+CLG+Q+S LS+R+P LSC+ N + +
Sbjct: 724 LAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCADWNSQKWVDSIQMSSGTL 783
Query: 1519 DTPGSHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYL 1340
++ S+I YAV+E+SFL+GL+PLEC+VHSV+NRDSSF ++A++PGTL R++MF+MRDLY
Sbjct: 784 ESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLYD 843
Query: 1339 AYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGSDRRCGGEPVGSLAACSISEA 1160
AYDGTVRN YGNQL+QFSY + E++ SC GGE VG+++AC+ISEA
Sbjct: 844 AYDGTVRNLYGNQLIQFSYDI-------EEDSSCN-KGFQQYALGGESVGAISACAISEA 895
Query: 1159 AYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVK 980
AYSAL +P K Q V+LFLS+KL + +G EY A+EVK
Sbjct: 896 AYSALGQPVSLLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVK 955
Query: 979 SHLEKVLFSEVISDTAIVFS--EENCQTHLSPWICHFHISKEEMQKKGLNVASISSALEK 806
++LE++LFS ++S I+F+ + Q SPW+CHFH+ KE + ++ L V SI +L +
Sbjct: 956 NYLERLLFSNIVSKVMIIFTPHDSRSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQ 1015
Query: 805 NCCSNLSKQKFELPVMHLDSRSHCS-----MAGPETS--------CIVGTVDIEEGCSNP 665
S K + + S CS G +TS CI+ V I E NP
Sbjct: 1016 RYYSQRKDSKVCFTNLKISSSRKCSADSMVKEGEDTSIDKEEGDDCIM--VTIVENSKNP 1073
Query: 664 --LAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPR--GSRTSSSGELCLRVSMARKFK 497
L VRD+++PFLLGT I+GF++V+KVDI+WN+ + SR SGEL LRV+++ +
Sbjct: 1074 IQLDSVRDLVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGS 1133
Query: 496 NLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSI 317
+FW ++ C IM +IDW RS+ ++IN S AYGI+A W +FF SL TSD GKSI
Sbjct: 1134 RGRFWGVLLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSI 1193
Query: 316 LEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAK 146
L +HL L+A+ LS +GEF+GL AKG+ Q S SPF QACF+ P F++AAK A
Sbjct: 1194 LPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGAT 1253
Query: 145 DDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQVDK-LDIFNTL 14
D+L G+LD +AWG + +GT G F++IYS+K +QV K +D++ L
Sbjct: 1254 DNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKGHQVAKSVDVYELL 1298
>ref|XP_004511607.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
[Cicer arietinum] gi|502160026|ref|XP_004511608.1|
PREDICTED: DNA-directed RNA polymerase D subunit 1-like
isoform X2 [Cicer arietinum]
gi|502160029|ref|XP_004511609.1| PREDICTED: DNA-directed
RNA polymerase D subunit 1-like isoform X3 [Cicer
arietinum] gi|502160032|ref|XP_004511610.1| PREDICTED:
DNA-directed RNA polymerase D subunit 1-like isoform X4
[Cicer arietinum]
Length = 1475
Score = 869 bits (2245), Expect = 0.0
Identities = 493/1124 (43%), Positives = 680/1124 (60%), Gaps = 35/1124 (3%)
Frame = -1
Query: 3274 PNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXXX 3095
PNC RV E+ + L+ G + FD+RT+A K+LVDF+ +ANEL SRV DC
Sbjct: 233 PNCHRVTEVPHRLSGGYPLSFDNRTRACKKLVDFRGTANELSSRVLDCLRFSKINPDKTP 292
Query: 3094 XXXXXSFNNKFDFPNKKPDSSKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGIPN 2915
+ N + +G +W+KD++LGK D+SFR V+VGDP ++L EIG+P
Sbjct: 293 SNVFTEIQLRKVGENA---CNSSGLRWMKDIVLGKRNDSSFRTVVVGDPDLELSEIGLPC 349
Query: 2914 DIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVYRP 2735
IAE L+V+E +N N Q L C RLLEKG + V RKG+ +FK +D++IGD YRP
Sbjct: 350 QIAEGLQVSEYVNRQNKQNLLYCCELRLLEKGQINVCRKGRPVVLFKKEDVQIGDIFYRP 409
Query: 2734 LEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQS 2555
L +GD V+INRPPS+HQHS+IAL+V++LP SV S+NPL C PLRGDFDGDCL Y+PQS
Sbjct: 410 LVDGDRVLINRPPSIHQHSMIALTVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQS 469
Query: 2554 IDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLEMFSL 2375
+ +RVEL E LS+S DSL AAYLL +D V L Q+QQ
Sbjct: 470 VGARVELNELVALDKQLINGQSGRNLLSLSQDSLTAAYLLLEDGVLLNVYQMQQ------ 523
Query: 2374 HLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQL 2195
L+M S PAIVKAP+ S W+GKQL
Sbjct: 524 ------------------------------LQMHCSRKLIPPAIVKAPSSNTSCWSGKQL 553
Query: 2194 LSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFS 2015
SMLMP F++ FP + S WL+D+D++++ +LV ++ KTLDIL
Sbjct: 554 FSMLMPSSFDYAFPSDGVFVCDGELISCSEASGWLRDSDNNVFQSLVEHFQGKTLDILHG 613
Query: 2014 AQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLINRTCM 1835
AQ+ L EW+SM GFSVSLSD+YLS +S +R NM+EE+S GLQEA QA L++ C
Sbjct: 614 AQKALCEWLSMTGFSVSLSDLYLSSDSYARKNMIEEISYGLQEAEQACDFNQLLVDYCC- 672
Query: 1834 ENLLRDSEDTHNCETFEVDDDNRLYD------LTEINIGAYQDVFRDVQRLVYHYASKEN 1673
+ L ++ N +VD N Y+ L++ ++ A++ VFR++Q L YA K+N
Sbjct: 673 DFLSGSLQEIENLVAVDVDCLN--YERQISAALSQASVDAFRQVFRNIQSLADKYACKDN 730
Query: 1672 SMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARNHRD--------FD 1517
+ LAM ++GSKG+LLKLV S+CLGLQHS L +++P LSC+A N + +
Sbjct: 731 AFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLPYKIPRKLSCAAWNSQKGMQIFSDTVE 790
Query: 1516 TPGSHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLA 1337
S+I YAV+E+SFL+GL+PLEC+VHSV+NRDSSF +NA++PGTL R++MF+MRD+Y A
Sbjct: 791 PVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDA 850
Query: 1336 YDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGSDRRCGGEPVGSLAACSISEAA 1157
YDGTVRN YGNQL+QFSY E++ SC D GGEPVG+L+AC++SEAA
Sbjct: 851 YDGTVRNLYGNQLIQFSY-------DAEEDSSCDSHFRED-TIGGEPVGTLSACAVSEAA 902
Query: 1156 YSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKS 977
YSAL +P K Q V+LFLS+K+ + G EY A+EVK+
Sbjct: 903 YSALSQPISLLEASPLLNLKYVLECGSRKRGGDQTVSLFLSEKIGKQRNGFEYAALEVKN 962
Query: 976 HLEKVLFSEVISDTAIVFSEENCQTH-LSPWICHFHISKEEMQKKGLNVASISSALEKNC 800
+LE+++FS+++S I+F+ ++ SPW+CHFH+ KE + ++ L V SI +L +
Sbjct: 963 YLERLMFSDIVSTVMIIFTPQSRSLEKYSPWVCHFHLDKENVTRRNLEVHSIIDSLYQRY 1022
Query: 799 CSNLSKQKFELPVMHLDSRSHCSM-----AGPETS---------CIVGTVDIEEGCSNPL 662
S K LP + + + CS+ G ETS CI T+ S L
Sbjct: 1023 DSLRKGSKVTLPNLKISTNRKCSVHYMAKEGGETSVDKEIDGEDCITVTIVENYMNSVQL 1082
Query: 661 AGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPRGSRT--SSSGELCLRVSMARKFKNLK 488
VR++M+PFLL T IKG E++KVDI+W DL +GS++ SSGEL LRV+M+
Sbjct: 1083 DVVRNMMIPFLLRTAIKGIFEIKKVDILWKDLSKGSKSYNGSSGELYLRVTMSSDSDRGT 1142
Query: 487 FWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEE 308
FW + N C IM +IDW RS+P++I+ A+GI+A W HF +L S TSD G SIL +
Sbjct: 1143 FWGALINHCHRIMPMIDWARSHPDNIHHFCSAFGIDAGWQHFLHNLSSATSDTGTSILPK 1202
Query: 307 HLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAKDDL 137
HL L+A+ LS +GEF+GL +KG+ Q S SPF QACFS P F++AAK D+L
Sbjct: 1203 HLRLVANSLSASGEFVGLNSKGMARQRNHASVSSPFVQACFSNPGSTFLKAAKSGVVDNL 1262
Query: 136 SGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQVDK-LDIFNTLST 8
GTLD +AWG + +GT G F+++YS+K ++ K +D+++ L T
Sbjct: 1263 QGTLDGLAWGNCLSMGTSGQFDVMYSEKVQELAKSVDVYDLLET 1306
>ref|XP_004298730.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Fragaria
vesca subsp. vesca]
Length = 1438
Score = 868 bits (2242), Expect = 0.0
Identities = 477/1117 (42%), Positives = 678/1117 (60%), Gaps = 26/1117 (2%)
Frame = -1
Query: 3277 TPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXX 3098
TPNC RV E+ GQS++FDDRT+AY++LVDF+ +ANELGSRV DC
Sbjct: 215 TPNCHRVTEVMYSFNNGQSLMFDDRTRAYRKLVDFRGTANELGSRVLDCLKISKINKEKT 274
Query: 3097 XXXXXXSFNNKFDFPNKKPDSSKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGIP 2918
K K S +G +W+KDV+LGK +D+ FRMV+VGDP IKL EIGIP
Sbjct: 275 GRDSISVEQQKI----KDSPSRTSGLRWIKDVVLGKRSDHCFRMVVVGDPNIKLSEIGIP 330
Query: 2917 NDIAERLEVTECLNSWNWQKLNMCANSRLLE--KGVLIVRRKGKKACVFKTDDLKIGDAV 2744
IAE+++++E LN +N++KL + RL +G + VRR + K ++L++GD +
Sbjct: 331 RHIAEKMQISENLNQYNFEKLFVFCQLRLGPDGRGDIHVRRNDSLVRIRKPEELEMGDII 390
Query: 2743 YRPLEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYV 2564
YR L GD+V+INRPPS+HQHS+IAL+ K+LP SV S+NPL C P +GDFDGDCL YV
Sbjct: 391 YRALSNGDVVLINRPPSIHQHSLIALTTKVLPVNSVVSINPLCCSPFQGDFDGDCLHGYV 450
Query: 2563 PQSIDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLEM 2384
PQS+++RVEL E +S+S DSL A YL+ +D + K Q+Q
Sbjct: 451 PQSVETRVELTELVALDKQLVNGQSGTNLMSLSQDSLTAFYLITEDGTLMNKFQMQ---- 506
Query: 2383 FSLHLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTG 2204
QL ML H PA++K P+ WT
Sbjct: 507 --------------------------------QLNMLCPHELPLPAVIKHPSGNSVSWTA 534
Query: 2203 KQLLSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDI 2024
KQ++SM +P DF++ FP N S+WL+DT +++ +L + + LDI
Sbjct: 535 KQIVSMFLPADFDYAFPSNGVYISNGELIASSEGSSWLRDTSGNLFQSLTEHCHGQVLDI 594
Query: 2023 LFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLINR 1844
FSAQ +L EW+SMRG SVSLSD+YL+ ++CSR N++EE+ GLQEA +A + +++
Sbjct: 595 FFSAQGVLCEWLSMRGLSVSLSDLYLASDTCSRKNLMEEIFYGLQEAEEACTIRQLMLDS 654
Query: 1843 TCMENLLRDSEDTHNCETFEVDDDNRLYD------LTEINIGAYQDVFRDVQRLVYHYAS 1682
++ L ++ + ++ Y L+++ + A ++ FRDVQ L Y YA
Sbjct: 655 --FQDFLMGYDENKSQSPLTFGSEHFCYQKQKTAALSQVTVDAIKEGFRDVQNLAYKYAG 712
Query: 1681 KENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARNH--------- 1529
+NS+LAM ++GSKG++LKLV +CLGLQHS PLSF+ P+ LSC A N
Sbjct: 713 VDNSLLAMFKAGSKGNMLKLVQHCMCLGLQHSLVPLSFKFPNQLSCDAWNDQKARGIVQE 772
Query: 1528 --RDFDTPGSHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYM 1355
R+F++ S+I AV+++SFL+GL+P+EC+VHSV++RD SF NAE+PGTL RK+M++M
Sbjct: 773 VGRNFESIESYIPSAVVKSSFLTGLNPVECFVHSVTSRDGSFSNNAELPGTLNRKLMYFM 832
Query: 1354 RDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGSDRRCGG-EPVGSLAA 1178
RDL+ AYDGTVRNAYGNQL+QFSY + D+ ST D + S CGG +PVG+L+A
Sbjct: 833 RDLHTAYDGTVRNAYGNQLIQFSYDI-DEGISTADSTTNSSYAKSVINCGGSQPVGALSA 891
Query: 1177 CSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEY 998
C+ISEAAYSALD+P +++ Q ++LFLS KL R +G EY
Sbjct: 892 CAISEAAYSALDQPVSLLEASPLLNLKNILECGSKRSSAKQTMSLFLSDKLDRHRHGFEY 951
Query: 997 GAIEVKSHLEKVLFSEVISDTAIVFSEEN-CQTHLSPWICHFHISKEEMQKKGLNVASIS 821
GA+EVK+HLE + FS+++S I+FS ++ + SPW+ HFHISKE ++++ LNV SI
Sbjct: 952 GALEVKNHLEGLNFSDIVSTVMIMFSSQSGSKMRFSPWVSHFHISKEIVRRRRLNVQSII 1011
Query: 820 SALEKNCCSNLSKQKFELPVMHLDSRSHCSMAGPETSCI-VGTVDIEEGCSNPLAGVRDV 644
AL C + +L +M + C +T CI V + S L R +
Sbjct: 1012 EALYAMC----NSAGADLKIMIIGRECDCCSTPNDTFCISVTLTEKYNNSSKELDKTRVL 1067
Query: 643 MMPFLLGTVIKGFVEVEKVDIVWNDLPRGSRTSSSGELCLRVSMARKF-KNLKFWSIIKN 467
++PFLL TV+KGF+E++KVDI+W D P SSGELCLRVSM+ K K W+++ +
Sbjct: 1068 VIPFLLKTVVKGFLEIKKVDILWIDRP-----GSSGELCLRVSMSGKTRKGTTLWNMLMD 1122
Query: 466 ACLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIAD 287
C+P+MD+IDW RS+P++++D+ AYGI+ HF L+S T D+GK+IL +HLLL+AD
Sbjct: 1123 DCIPVMDMIDWSRSHPDNVHDICTAYGIDVGQKHFLNKLESATKDVGKTILPQHLLLVAD 1182
Query: 286 RLSFTGEFLGLTAKGL---ITQTSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAV 116
LS TGEF+ L AKG+ + S +PF QACFS P V+AAK D+L G+LDA+
Sbjct: 1183 CLSATGEFVSLNAKGIGQQLEHASVIAPFMQACFSTPGPCLVKAAKVGVVDNLQGSLDAL 1242
Query: 115 AWGKKVPIGTGGNFEIIYSQKDYQVDKLDIFNTLSTQ 5
WG +G+GG F+II+S+ + +++ LS+Q
Sbjct: 1243 TWGNTPSLGSGGQFDIIFSKGPVSSKPIKVYDLLSSQ 1279
>ref|XP_006573755.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
[Glycine max]
Length = 1457
Score = 867 bits (2241), Expect = 0.0
Identities = 489/1125 (43%), Positives = 689/1125 (61%), Gaps = 37/1125 (3%)
Frame = -1
Query: 3277 TPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXX 3098
TPNC RV E+ +++G + FDDRT++ K+LVDF+ +ANEL SRV DC
Sbjct: 221 TPNCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDFRGTANELSSRVLDCLRISKLNPDKT 280
Query: 3097 XXXXXXSFNNKFDFPNKKPDSSKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGIP 2918
+ N + +G +W+KDV+LGK D+SFR V+VGDP ++L EIGIP
Sbjct: 281 PNSIFADIQQRKIGENA---FNSSGLRWIKDVVLGKRNDSSFRTVVVGDPDLELSEIGIP 337
Query: 2917 NDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVYR 2738
IAE L+V+E +N N +KL C LLEKG + V RKG ++K +DL+IGD YR
Sbjct: 338 CHIAESLQVSEYVNRQNREKLLYCCELHLLEKGKINVCRKGSIVHLYKKEDLQIGDKFYR 397
Query: 2737 PLEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQ 2558
PL +GD V+INRPPS+HQHS+I+L+V++LP SV +NPL C PLRGDFDGDCL Y+PQ
Sbjct: 398 PLADGDKVLINRPPSIHQHSMISLTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQ 457
Query: 2557 SIDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLEMFS 2378
S+ +R+EL E LS+S DSL AAYLL +D V L Q+QQL+M S
Sbjct: 458 SVTARIELNELVALDRQLINGQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMLS 517
Query: 2377 LHLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQ 2198
+++ PA+VKAP+ S+W GKQ
Sbjct: 518 ----------------------------------ISNKRLIPPAVVKAPSSNSSLWNGKQ 543
Query: 2197 LLSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILF 2018
L SML+P DF++ FP + S WL+D+D +++ +LV +Y KTL+ L+
Sbjct: 544 LFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQGKTLNFLY 603
Query: 2017 SAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLINRTC 1838
+AQ++L EW+SM GFSVSLSD+YLS +S +R NM+EE+ GLQ+A +A K L++ C
Sbjct: 604 AAQKVLCEWLSMTGFSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQLLLDYYC 663
Query: 1837 --MENLLRDSEDTHNCETFEVDDDNRLY-DLTEINIGAYQDVFRDVQRLVYHYASKENSM 1667
+ L++SE+ ++ + ++ L++ ++ A++ VFR++Q L YA K NS
Sbjct: 664 DFLSGSLQESENAITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKYACKGNSF 723
Query: 1666 LAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARNHRDF----------- 1520
LAM ++GSKG+LLKLV S+CLG+Q+S LS+R+P LSC+ N + +
Sbjct: 724 LAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCADWNSQKWVDSIQMSSGTL 783
Query: 1519 DTPGSHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYL 1340
++ S+I YAV+E+SFL+GL+PLEC+VHSV+NRDSSF ++A++PGTL R++MF+MRDLY
Sbjct: 784 ESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLYD 843
Query: 1339 AYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGSDRRCGGEPVGSLAACSISEA 1160
AYDGTVRN YGNQL+QFSY + E++ SC GGE VG+++AC+ISEA
Sbjct: 844 AYDGTVRNLYGNQLIQFSYDI-------EEDSSCN-KGFQQYALGGESVGAISACAISEA 895
Query: 1159 AYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVK 980
AYSAL +P K Q V+LFLS+KL + +G EY A+EVK
Sbjct: 896 AYSALGQPVSLLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVK 955
Query: 979 SHLEKVLFSEVISDTAIVFS--EENCQTHLSPWICHFHISKEEMQKKGLNVASISSALEK 806
++LE++LFS ++S I+F+ + Q SPW+CHFH+ KE + ++ L V SI +L +
Sbjct: 956 NYLERLLFSNIVSKVMIIFTPHDSRSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQ 1015
Query: 805 NCCSNLSKQKFELPVMHLDSRSHCS-----MAGPETS--------CIVGTVDIEEGCSNP 665
S K + + SR CS G +TS CI+ V I E NP
Sbjct: 1016 RYYSQRKDSKVCFTNLKISSRK-CSADSMVKEGEDTSIDKEEGDDCIM--VTIVENSKNP 1072
Query: 664 --LAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPR--GSRTSSSGELCLRVSMARKFK 497
L VRD+++PFLLGT I+GF++V+KVDI+WN+ + SR SGEL LRV+++ +
Sbjct: 1073 IQLDSVRDLVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGS 1132
Query: 496 NLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSI 317
+FW ++ C IM +IDW RS+ ++IN S AYGI+A W +FF SL TSD GKSI
Sbjct: 1133 RGRFWGVLLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSI 1192
Query: 316 LEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAK 146
L +HL L+A+ LS +GEF+GL AKG+ Q S SPF QACF+ P F++AAK A
Sbjct: 1193 LPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGAT 1252
Query: 145 DDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQVDK-LDIFNTL 14
D+L G+LD +AWG + +GT G F++IYS+K +QV K +D++ L
Sbjct: 1253 DNLQGSLDGLAWGNCLSMGTSGMFDVIYSEKGHQVAKSVDVYELL 1297
>ref|XP_006358859.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
[Solanum tuberosum]
Length = 1233
Score = 867 bits (2241), Expect = 0.0
Identities = 489/1114 (43%), Positives = 684/1114 (61%), Gaps = 26/1114 (2%)
Frame = -1
Query: 3277 TPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXX 3098
TPN RV E GQ MIFD+ + Y++L+DF+ +AN+L V D
Sbjct: 15 TPNSHRVTEF------GQHMIFDESNRLYRKLIDFRGTANDLSMCVLDRIKVSKIRADRS 68
Query: 3097 XXXXXXSFNNKFDFPNKKPDSSKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGIP 2918
P++ TG ++VK+++L K T+++FRMV+VGDP I+LGEIGIP
Sbjct: 69 VI--------------NDPNAPATGLKYVKELVLAKRTNHAFRMVVVGDPNIELGEIGIP 114
Query: 2917 NDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVYR 2738
+AE L + E L+ NW+++ + +L++G ++VRR G + D L+ GD ++R
Sbjct: 115 CHVAENLHMAESLSLRNWERMTDLCDLMILQRGGILVRRNGVLVRISVMDRLQNGDIIHR 174
Query: 2737 PLEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQ 2558
PL +GD+VMINRPPS+HQHS+IALSV+ILP SV S+NPL+C P RGDFDGDCL Y+PQ
Sbjct: 175 PLIDGDVVMINRPPSIHQHSLIALSVRILPINSVLSINPLVCSPFRGDFDGDCLHGYIPQ 234
Query: 2557 SIDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLEMFS 2378
SIDSR+EL E LS+SHDSL AA+L+ + V+L + Q+QQL+
Sbjct: 235 SIDSRIELSELVALKQQLLDGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQQLQ--- 291
Query: 2377 LHLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQ 2198
M AIVKAP + WTGKQ
Sbjct: 292 ---------------------------------MFCPRQLGMTAIVKAPPGNLCYWTGKQ 318
Query: 2197 LLSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILF 2018
L S+L+P D + FP N S+WL+D D+++ +LV+++G TLD+L+
Sbjct: 319 LFSLLLPSDLEYVFPSNGVCISEGEIVTSSGGSSWLRDVSDNLFYSLVKHHGGDTLDLLY 378
Query: 2017 SAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLI--NR 1844
+AQ +L EW+SMRG SVSLSD+Y+S +S SR NM++EV GLQEA + + +I N+
Sbjct: 379 AAQTVLCEWLSMRGLSVSLSDLYISSDSYSRENMIDEVCSGLQEAERLSYIQLLMIKYNK 438
Query: 1843 TCMENLLRDSEDTHNCE-TFEVDDDNRLYDLTEINIGAYQDVFRDVQRLVYHYASKENSM 1667
+ L +S+++ + F + L++ + A++ VFRD+Q LVY+YAS +NS+
Sbjct: 439 DFLSGSLEESKNSMGFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSL 498
Query: 1666 LAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARN-----------HRDF 1520
LAM+++GSKG+LLKLV S+CLGLQ S P+SFR+P LSC A N H+
Sbjct: 499 LAMLKAGSKGNLLKLVQHSMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVP 558
Query: 1519 DTPGSHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYL 1340
+ PGS+I AV+++SFL+GL+PLEC+VHS++ RDSSF +A++ GTL RK+MF+MRDLY+
Sbjct: 559 ECPGSYIPSAVVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYV 618
Query: 1339 AYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGSDRRCGGEPVGSLAACSISEA 1160
YDGTVRNAYGNQ+VQFSY ++K+ ST+ S + GG PVGSLAAC+ISEA
Sbjct: 619 GYDGTVRNAYGNQIVQFSYYEAEKIASTKGTGDALES--HNHAIGGHPVGSLAACAISEA 676
Query: 1159 AYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVK 980
AYSALD+P + + ++FLSK+L R +G EYGA+EVK
Sbjct: 677 AYSALDQPVSALESSPLLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYGALEVK 736
Query: 979 SHLEKVLFSEVISDTAIVFSEENCQ-THLSPWICHFHISKEEMQKKGLNVASISSALEKN 803
HLE++L SEV+S I FS E + TH PW+CHFHI KE ++ + L + SI AL
Sbjct: 737 GHLERLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSILDALNMR 796
Query: 802 CCSNLSKQKFELPVMHLDSRSHCSM--AGPETSCIVGTVDIEEGCSNP---LAGVRDVMM 638
+ +K +LP +H+ + CS+ A E S I TV + E +P L +RDV++
Sbjct: 797 YRAATTKGGNDLPNLHITCKD-CSVAEARKEKSEICITVSVVETSKDPSSLLDTLRDVVI 855
Query: 637 PFLLGTVIKGFVEVEKVDIVWNDLPRGSRTS--SSGELCLRVSMARKFKNLKFWSIIKNA 464
PFLL TVIKGF +KVDI+W +LP S++S S+GEL L+V M+ +KFW+ + ++
Sbjct: 856 PFLLETVIKGFSAFKKVDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKFWNALVDS 915
Query: 463 CLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADR 284
CL I DLIDWERSYP+ ++D++ AYGI+ AW +F L S S+ GK IL EHL+L AD
Sbjct: 916 CLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADS 975
Query: 283 LSFTGEFLGLTAKGLITQTSTP---SPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVA 113
L+ TGEF+ L+AKGL Q SPF QACFS P +FV+AAK D+L G+L+++A
Sbjct: 976 LTATGEFVPLSAKGLTLQRKAAGVISPFMQACFSNPGDSFVRAAKMGLSDNLQGSLESLA 1035
Query: 112 WGKKVPIGTGGNFEIIYSQKDYQ-VDKLDIFNTL 14
WGK IGTG +F+IIYS K Y+ + +D++ L
Sbjct: 1036 WGKTPSIGTGSSFDIIYSGKGYEPAEPIDVYTLL 1069
>ref|XP_006358858.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Solanum tuberosum]
Length = 1446
Score = 867 bits (2241), Expect = 0.0
Identities = 489/1114 (43%), Positives = 684/1114 (61%), Gaps = 26/1114 (2%)
Frame = -1
Query: 3277 TPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXX 3098
TPN RV E GQ MIFD+ + Y++L+DF+ +AN+L V D
Sbjct: 228 TPNSHRVTEF------GQHMIFDESNRLYRKLIDFRGTANDLSMCVLDRIKVSKIRADRS 281
Query: 3097 XXXXXXSFNNKFDFPNKKPDSSKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGIP 2918
P++ TG ++VK+++L K T+++FRMV+VGDP I+LGEIGIP
Sbjct: 282 VI--------------NDPNAPATGLKYVKELVLAKRTNHAFRMVVVGDPNIELGEIGIP 327
Query: 2917 NDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVYR 2738
+AE L + E L+ NW+++ + +L++G ++VRR G + D L+ GD ++R
Sbjct: 328 CHVAENLHMAESLSLRNWERMTDLCDLMILQRGGILVRRNGVLVRISVMDRLQNGDIIHR 387
Query: 2737 PLEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQ 2558
PL +GD+VMINRPPS+HQHS+IALSV+ILP SV S+NPL+C P RGDFDGDCL Y+PQ
Sbjct: 388 PLIDGDVVMINRPPSIHQHSLIALSVRILPINSVLSINPLVCSPFRGDFDGDCLHGYIPQ 447
Query: 2557 SIDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLEMFS 2378
SIDSR+EL E LS+SHDSL AA+L+ + V+L + Q+QQL+
Sbjct: 448 SIDSRIELSELVALKQQLLDGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQQLQ--- 504
Query: 2377 LHLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQ 2198
M AIVKAP + WTGKQ
Sbjct: 505 ---------------------------------MFCPRQLGMTAIVKAPPGNLCYWTGKQ 531
Query: 2197 LLSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILF 2018
L S+L+P D + FP N S+WL+D D+++ +LV+++G TLD+L+
Sbjct: 532 LFSLLLPSDLEYVFPSNGVCISEGEIVTSSGGSSWLRDVSDNLFYSLVKHHGGDTLDLLY 591
Query: 2017 SAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLI--NR 1844
+AQ +L EW+SMRG SVSLSD+Y+S +S SR NM++EV GLQEA + + +I N+
Sbjct: 592 AAQTVLCEWLSMRGLSVSLSDLYISSDSYSRENMIDEVCSGLQEAERLSYIQLLMIKYNK 651
Query: 1843 TCMENLLRDSEDTHNCE-TFEVDDDNRLYDLTEINIGAYQDVFRDVQRLVYHYASKENSM 1667
+ L +S+++ + F + L++ + A++ VFRD+Q LVY+YAS +NS+
Sbjct: 652 DFLSGSLEESKNSMGFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSL 711
Query: 1666 LAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARN-----------HRDF 1520
LAM+++GSKG+LLKLV S+CLGLQ S P+SFR+P LSC A N H+
Sbjct: 712 LAMLKAGSKGNLLKLVQHSMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVP 771
Query: 1519 DTPGSHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYL 1340
+ PGS+I AV+++SFL+GL+PLEC+VHS++ RDSSF +A++ GTL RK+MF+MRDLY+
Sbjct: 772 ECPGSYIPSAVVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYV 831
Query: 1339 AYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGSDRRCGGEPVGSLAACSISEA 1160
YDGTVRNAYGNQ+VQFSY ++K+ ST+ S + GG PVGSLAAC+ISEA
Sbjct: 832 GYDGTVRNAYGNQIVQFSYYEAEKIASTKGTGDALES--HNHAIGGHPVGSLAACAISEA 889
Query: 1159 AYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVK 980
AYSALD+P + + ++FLSK+L R +G EYGA+EVK
Sbjct: 890 AYSALDQPVSALESSPLLNLKKILESGAGSRSGEKTASMFLSKRLGRWAHGFEYGALEVK 949
Query: 979 SHLEKVLFSEVISDTAIVFSEENCQ-THLSPWICHFHISKEEMQKKGLNVASISSALEKN 803
HLE++L SEV+S I FS E + TH PW+CHFHI KE ++ + L + SI AL
Sbjct: 950 GHLERLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSILDALNMR 1009
Query: 802 CCSNLSKQKFELPVMHLDSRSHCSM--AGPETSCIVGTVDIEEGCSNP---LAGVRDVMM 638
+ +K +LP +H+ + CS+ A E S I TV + E +P L +RDV++
Sbjct: 1010 YRAATTKGGNDLPNLHITCKD-CSVAEARKEKSEICITVSVVETSKDPSSLLDTLRDVVI 1068
Query: 637 PFLLGTVIKGFVEVEKVDIVWNDLPRGSRTS--SSGELCLRVSMARKFKNLKFWSIIKNA 464
PFLL TVIKGF +KVDI+W +LP S++S S+GEL L+V M+ +KFW+ + ++
Sbjct: 1069 PFLLETVIKGFSAFKKVDILWKELPSPSKSSRGSTGELYLQVFMSESCDRIKFWNALVDS 1128
Query: 463 CLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADR 284
CL I DLIDWERSYP+ ++D++ AYGI+ AW +F L S S+ GK IL EHL+L AD
Sbjct: 1129 CLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADS 1188
Query: 283 LSFTGEFLGLTAKGLITQTSTP---SPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVA 113
L+ TGEF+ L+AKGL Q SPF QACFS P +FV+AAK D+L G+L+++A
Sbjct: 1189 LTATGEFVPLSAKGLTLQRKAAGVISPFMQACFSNPGDSFVRAAKMGLSDNLQGSLESLA 1248
Query: 112 WGKKVPIGTGGNFEIIYSQKDYQ-VDKLDIFNTL 14
WGK IGTG +F+IIYS K Y+ + +D++ L
Sbjct: 1249 WGKTPSIGTGSSFDIIYSGKGYEPAEPIDVYTLL 1282
>ref|XP_004511611.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
[Cicer arietinum]
Length = 1474
Score = 866 bits (2237), Expect = 0.0
Identities = 491/1123 (43%), Positives = 680/1123 (60%), Gaps = 34/1123 (3%)
Frame = -1
Query: 3274 PNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXXX 3095
PNC RV E+ + L+ G + FD+RT+A K+LVDF+ +ANEL SRV DC
Sbjct: 233 PNCHRVTEVPHRLSGGYPLSFDNRTRACKKLVDFRGTANELSSRVLDCLRFSKINPDKTP 292
Query: 3094 XXXXXSFNNKFDFPNKKPDSSKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGIPN 2915
+ N + +G +W+KD++LGK D+SFR V+VGDP ++L EIG+P
Sbjct: 293 SNVFTEIQLRKVGENA---CNSSGLRWMKDIVLGKRNDSSFRTVVVGDPDLELSEIGLPC 349
Query: 2914 DIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVYRP 2735
IAE L+V+E +N N Q L C RLLEKG + V RKG+ +FK +D++IGD YRP
Sbjct: 350 QIAEGLQVSEYVNRQNKQNLLYCCELRLLEKGQINVCRKGRPVVLFKKEDVQIGDIFYRP 409
Query: 2734 LEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQS 2555
L +GD V+INRPPS+HQHS+IAL+V++LP SV S+NPL C PLRGDFDGDCL Y+PQS
Sbjct: 410 LVDGDRVLINRPPSIHQHSMIALTVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQS 469
Query: 2554 IDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLEMFSL 2375
+ +RVEL E LS+S DSL AAYLL +D V L Q+QQ
Sbjct: 470 VGARVELNELVALDKQLINGQSGRNLLSLSQDSLTAAYLLLEDGVLLNVYQMQQ------ 523
Query: 2374 HLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQL 2195
L+M S PAIVKAP+ S W+GKQL
Sbjct: 524 ------------------------------LQMHCSRKLIPPAIVKAPSSNTSCWSGKQL 553
Query: 2194 LSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILFS 2015
SMLMP F++ FP + S WL+D+D++++ +LV ++ KTLDIL
Sbjct: 554 FSMLMPSSFDYAFPSDGVFVCDGELISCSEASGWLRDSDNNVFQSLVEHFQGKTLDILHG 613
Query: 2014 AQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLINRTCM 1835
AQ+ L EW+SM GFSVSLSD+YLS +S +R NM+EE+S GLQEA QA L++ C
Sbjct: 614 AQKALCEWLSMTGFSVSLSDLYLSSDSYARKNMIEEISYGLQEAEQACDFNQLLVDYCC- 672
Query: 1834 ENLLRDSEDTHNCETFEVDDDNRLYD------LTEINIGAYQDVFRDVQRLVYHYASKEN 1673
+ L ++ N +VD N Y+ L++ ++ A++ VFR++Q L YA K+N
Sbjct: 673 DFLSGSLQEIENLVAVDVDCLN--YERQISAALSQASVDAFRQVFRNIQSLADKYACKDN 730
Query: 1672 SMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARNHRD--------FD 1517
+ LAM ++GSKG+LLKLV S+CLGLQHS L +++P LSC+A N + +
Sbjct: 731 AFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLPYKIPRKLSCAAWNSQKGMQIFSDTVE 790
Query: 1516 TPGSHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLA 1337
S+I YAV+E+SFL+GL+PLEC+VHSV+NRDSSF +NA++PGTL R++MF+MRD+Y A
Sbjct: 791 PVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRDMYDA 850
Query: 1336 YDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGSDRRCGGEPVGSLAACSISEAA 1157
YDGTVRN YGNQL+QFSY E++ SC D GGEPVG+L+AC++SEAA
Sbjct: 851 YDGTVRNLYGNQLIQFSY-------DAEEDSSCDSHFRED-TIGGEPVGTLSACAVSEAA 902
Query: 1156 YSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKS 977
YSAL +P K Q V+LFLS+K+ + G EY A+EVK+
Sbjct: 903 YSALSQPISLLEASPLLNLKYVLECGSRKRGGDQTVSLFLSEKIGKQRNGFEYAALEVKN 962
Query: 976 HLEKVLFSEVISDTAIVFSEENCQTH-LSPWICHFHISKEEMQKKGLNVASISSALEKNC 800
+LE+++FS+++S I+F+ ++ SPW+CHFH+ KE + ++ L V SI +L +
Sbjct: 963 YLERLMFSDIVSTVMIIFTPQSRSLEKYSPWVCHFHLDKENVTRRNLEVHSIIDSLYQRY 1022
Query: 799 CSNLSKQKFELPVMHLDSRS----HCSMAGPETS---------CIVGTVDIEEGCSNPLA 659
S K LP + + ++ + + G ETS CI T+ S L
Sbjct: 1023 DSLRKGSKVTLPNLKISTKKCSVHYMAKEGGETSVDKEIDGEDCITVTIVENYMNSVQLD 1082
Query: 658 GVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPRGSRT--SSSGELCLRVSMARKFKNLKF 485
VR++M+PFLL T IKG E++KVDI+W DL +GS++ SSGEL LRV+M+ F
Sbjct: 1083 VVRNMMIPFLLRTAIKGIFEIKKVDILWKDLSKGSKSYNGSSGELYLRVTMSSDSDRGTF 1142
Query: 484 WSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEH 305
W + N C IM +IDW RS+P++I+ A+GI+A W HF +L S TSD G SIL +H
Sbjct: 1143 WGALINHCHRIMPMIDWARSHPDNIHHFCSAFGIDAGWQHFLHNLSSATSDTGTSILPKH 1202
Query: 304 LLLIADRLSFTGEFLGLTAKGLITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLS 134
L L+A+ LS +GEF+GL +KG+ Q S SPF QACFS P F++AAK D+L
Sbjct: 1203 LRLVANSLSASGEFVGLNSKGMARQRNHASVSSPFVQACFSNPGSTFLKAAKSGVVDNLQ 1262
Query: 133 GTLDAVAWGKKVPIGTGGNFEIIYSQKDYQVDK-LDIFNTLST 8
GTLD +AWG + +GT G F+++YS+K ++ K +D+++ L T
Sbjct: 1263 GTLDGLAWGNCLSMGTSGQFDVMYSEKVQELAKSVDVYDLLET 1305
>ref|XP_003611164.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355512499|gb|AES94122.1| DNA-directed RNA polymerase
subunit beta [Medicago truncatula]
Length = 1687
Score = 863 bits (2229), Expect = 0.0
Identities = 495/1140 (43%), Positives = 683/1140 (59%), Gaps = 51/1140 (4%)
Frame = -1
Query: 3274 PNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXXX 3095
PNC RV E+ + L+ G + FD+RT+A K+LVDF+ +ANEL SRV DC
Sbjct: 385 PNCHRVTEVPHRLSGGYPLSFDNRTRACKKLVDFRGTANELSSRVLDCLRFSKASFSVIN 444
Query: 3094 XXXXXSFNNKFDFPNKKPDSS---KTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIG 2924
N + +K + +G +W+KDV+LGK D +FR V+VGDP ++L EIG
Sbjct: 445 PDRTPV-NIFTELQQRKVGENACNSSGLRWMKDVVLGKRNDCTFRTVVVGDPDLELSEIG 503
Query: 2923 IPNDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAV 2744
IP IAE L+V+E +N N Q L C RLLEKG + VRR G ++K +DL+IGD
Sbjct: 504 IPCQIAEALQVSEYVNRQNRQNLLYCCELRLLEKGQINVRRNGNPVVLYKKEDLQIGDIF 563
Query: 2743 YRPLEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYV 2564
YRPL +GD V+INRPPS+HQHS+IAL+V++LP SV S+NP+ C PLRGDFDGDCL Y+
Sbjct: 564 YRPLVDGDKVLINRPPSIHQHSMIALTVRVLPISSVVSINPICCSPLRGDFDGDCLHGYI 623
Query: 2563 PQSIDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLEM 2384
PQS+ +RVEL E LS+S DSL AA+LL +D V Q+QQL
Sbjct: 624 PQSVGARVELNELVALDRQLINGQSGGNLLSLSQDSLTAAHLLLEDGVGFNIYQVQQL-- 681
Query: 2383 FSLHLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTG 2204
EML + SPAI KAP+ W+G
Sbjct: 682 ----------------------------------EMLCNKELTSPAIFKAPSSNTPFWSG 707
Query: 2203 KQLLSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDI 2024
KQL SML+P F++ FP N S WL+D++++++ +LV ++ K LD+
Sbjct: 708 KQLFSMLLPSKFDYAFPSNDVFVKDGELISCSESSGWLRDSENNVFQSLVEHFQGKILDV 767
Query: 2023 LFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLINR 1844
L AQ+ L EW+SM GFSVSLSD+YLS +S +R NM+EE+S GL+ A QA L++
Sbjct: 768 LHGAQKALCEWLSMTGFSVSLSDLYLSSDSYARKNMMEEISYGLRVAEQACDFNQLLVDH 827
Query: 1843 TCMENLLRDSEDTHNCETFEVDDDNRLYDLT----EINIGAYQDVFRDVQRLVYHYASKE 1676
+ L E+ T +VD N ++ + ++ A++ VFR++Q L +A K+
Sbjct: 828 YS-DFLSASPEENEKFVTVDVDRLNHERQISAAQSQASVDAFRHVFRNIQSLADKHACKD 886
Query: 1675 NSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARNHRD--------- 1523
NS LAM ++GSKG+LLKLV S+CLGLQHS LS+R+P LSC+ N +
Sbjct: 887 NSFLAMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRIPRELSCAGWNSQKGLHSMEMSS 946
Query: 1522 --FDTPGSHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRD 1349
+ S+I +AV+E+SFL+GL+PLEC+VHSV+NRDSSF +NA++PGTL R++MF+MRD
Sbjct: 947 DTLEPKQSYIAHAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADLPGTLTRRLMFFMRD 1006
Query: 1348 LYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGSDRRCGGEPVGSLAACSI 1169
+Y AYDGTVRN YGNQL+QFSY E++ SC S + GGEPVG+L+AC++
Sbjct: 1007 MYDAYDGTVRNLYGNQLIQFSY-------DAEEDSSCD-SYFREDIIGGEPVGALSACAV 1058
Query: 1168 SEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAI 989
SEAAYSAL +P K Q V+LFLS+K+ + G EY A+
Sbjct: 1059 SEAAYSALSQPISLLEASPLLNLKNVLECGSRKKGGDQTVSLFLSEKIGKQRNGFEYAAL 1118
Query: 988 EVKSHLEKVLFSEVISDTAIVFSEENC-QTHLSPWICHFHISKEEMQKKGLNVASISSAL 812
EVK++LE+ +FS ++S I+F+ ++C Q SPW+CHFH+ KE + ++ L V SI +L
Sbjct: 1119 EVKNYLERYMFSNIVSTVMIIFTPQHCSQVKYSPWVCHFHLDKENVTRRKLEVHSIIDSL 1178
Query: 811 EKNCCSNLSKQKFELPVMHLDSRS----------HCSMA-------GPETS--------- 710
+ S + K LP + + S+S CS G ETS
Sbjct: 1179 YQQYDSFRRESKVILPSLKISSKSGREVENKEGQTCSKCQDYKANEGGETSVGNEKDGED 1238
Query: 709 CIVGTVDIEEGCSNPLAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPRGSRT--SSSG 536
CI V + S L VR ++PFLL T IKGF+E++KVDI+W DLP+ +++ S+G
Sbjct: 1239 CITVAVVEDSKNSVQLDSVRKSLIPFLLQTAIKGFLEIKKVDILWKDLPKVTKSYNGSAG 1298
Query: 535 ELCLRVSMARKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFR 356
EL LRV+M+ N FW + N C IM LIDW RS+P++I+ A+GI+A W H+F
Sbjct: 1299 ELYLRVTMSSGNDNGTFWGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHYFH 1358
Query: 355 SLKSVTSDIGKSILEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSPFNQACFSRP 185
+L S TSD GKSIL +HL L+A+ LS +GEF+GL AKG+ Q S SPF QACFS P
Sbjct: 1359 NLSSATSDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNP 1418
Query: 184 LFNFVQAAKDEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQVDK-LDIFNTLST 8
+F++AAK D+L G LDA+AWG +P+GTGG F+IIYS+K +++K +D++ L T
Sbjct: 1419 GSSFLKAAKSGIVDNLQGNLDALAWGNCLPMGTGGQFDIIYSEKVEEINKSVDVYGLLET 1478
>ref|XP_006573756.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
[Glycine max]
Length = 1455
Score = 862 bits (2228), Expect = 0.0
Identities = 483/1111 (43%), Positives = 679/1111 (61%), Gaps = 36/1111 (3%)
Frame = -1
Query: 3277 TPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXX 3098
TPNC RV E+ +++G + FDDRT++ K+LVDF+ +ANEL SRV DC
Sbjct: 221 TPNCHRVTEVPYAISSGSRLSFDDRTRSCKKLVDFRGTANELSSRVLDCLRISKLNPDKT 280
Query: 3097 XXXXXXSFNNKFDFPNKKPDSSKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGIP 2918
+ N + +G +W+KDV+LGK D+SFR V+VGDP ++L EIGIP
Sbjct: 281 PNSIFADIQQRKIGENA---FNSSGLRWIKDVVLGKRNDSSFRTVVVGDPDLELSEIGIP 337
Query: 2917 NDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVYR 2738
IAE L+V+E +N N +KL C LLEKG + V RKG ++K +DL+IGD YR
Sbjct: 338 CHIAESLQVSEYVNRQNREKLLYCCELHLLEKGKINVCRKGSIVHLYKKEDLQIGDKFYR 397
Query: 2737 PLEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQ 2558
PL +GD V+INRPPS+HQHS+I+L+V++LP SV +NPL C PLRGDFDGDCL Y+PQ
Sbjct: 398 PLADGDKVLINRPPSIHQHSMISLTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQ 457
Query: 2557 SIDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLEMFS 2378
S+ +R+EL E LS+S DSL AAYLL +D V L Q+QQL+M S
Sbjct: 458 SVTARIELNELVALDRQLINGQSGRNLLSLSQDSLTAAYLLMEDGVLLNVYQMQQLQMLS 517
Query: 2377 LHLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQ 2198
+++ PA+VKAP+ S+W GKQ
Sbjct: 518 ----------------------------------ISNKRLIPPAVVKAPSSNSSLWNGKQ 543
Query: 2197 LLSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILF 2018
L SML+P DF++ FP + S WL+D+D +++ +LV +Y KTL+ L+
Sbjct: 544 LFSMLLPYDFDYSFPSDGVVVSDGELVSSSEASGWLRDSDYNVFQSLVEHYQGKTLNFLY 603
Query: 2017 SAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLINRTC 1838
+AQ++L EW+SM GFSVSLSD+YLS +S +R NM+EE+ GLQ+A +A K L++ C
Sbjct: 604 AAQKVLCEWLSMTGFSVSLSDLYLSSDSYARENMIEEIFYGLQDAERACNFKQLLLDYYC 663
Query: 1837 --MENLLRDSEDTHNCETFEVDDDNRLY-DLTEINIGAYQDVFRDVQRLVYHYASKENSM 1667
+ L++SE+ ++ + ++ L++ ++ A++ VFR++Q L YA K NS
Sbjct: 664 DFLSGSLQESENAITVNADRLNYERQISASLSQASVDAFRQVFRNIQSLADKYACKGNSF 723
Query: 1666 LAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARNHRDF----------- 1520
LAM ++GSKG+LLKLV S+CLG+Q+S LS+R+P LSC+ N + +
Sbjct: 724 LAMFKAGSKGNLLKLVQHSMCLGMQNSLVRLSYRLPRHLSCADWNSQKWVDSIQMSSGTL 783
Query: 1519 DTPGSHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYL 1340
++ S+I YAV+E+SFL+GL+PLEC+VHSV+NRDSSF ++A++PGTL R++MF+MRDLY
Sbjct: 784 ESVQSYIPYAVVESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLYD 843
Query: 1339 AYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGSDRRCGGEPVGSLAACSISEA 1160
AYDGTVRN YGNQL+QFSY + E++ SC GGE VG+++AC+ISEA
Sbjct: 844 AYDGTVRNLYGNQLIQFSYDI-------EEDSSCN-KGFQQYALGGESVGAISACAISEA 895
Query: 1159 AYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVK 980
AYSAL +P K Q V+LFLS+KL + +G EY A+EVK
Sbjct: 896 AYSALGQPVSLLETSPLLNLKNVLECGSRKRNGDQTVSLFLSEKLGKQRHGFEYAALEVK 955
Query: 979 SHLEKVLFSEVISDTAIVFS--EENCQTHLSPWICHFHISKEEMQKKGLNVASISSALEK 806
++LE++LFS ++S I+F+ + Q SPW+CHFH+ KE + ++ L V SI +L +
Sbjct: 956 NYLERLLFSNIVSKVMIIFTPHDSRSQEKYSPWVCHFHLDKEIVTRRKLKVHSIIDSLYQ 1015
Query: 805 NCCSNLSKQKFELPVMHLDSRSHCS-----MAGPETS--------CIVGTVDIEEGCSNP 665
S K + + S CS G +TS CI+ V I E NP
Sbjct: 1016 RYYSQRKDSKVCFTNLKISSSRKCSADSMVKEGEDTSIDKEEGDDCIM--VTIVENSKNP 1073
Query: 664 --LAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPR--GSRTSSSGELCLRVSMARKFK 497
L VRD+++PFLLGT I+GF++V+KVDI+WN+ + SR SGEL LRV+++ +
Sbjct: 1074 IQLDSVRDLVIPFLLGTAIQGFLDVKKVDILWNNQSKVTNSRNGFSGELYLRVTLSSEGS 1133
Query: 496 NLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSI 317
+FW ++ C IM +IDW RS+ ++IN S AYGI+A W +FF SL TSD GKSI
Sbjct: 1134 RGRFWGVLLKLCHKIMHIIDWTRSHTDNINHFSSAYGIDAGWQYFFNSLACATSDTGKSI 1193
Query: 316 LEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAK 146
L +HL L+A+ LS +GEF+GL AKG+ Q S SPF QACF+ P F++AAK A
Sbjct: 1194 LPKHLCLVANSLSCSGEFVGLNAKGMALQRKHASVSSPFVQACFANPGSCFIKAAKSGAT 1253
Query: 145 DDLSGTLDAVAWGKKVPIGTGGNFEIIYSQK 53
D+L G+LD +AWG + +GT G F++IYS+K
Sbjct: 1254 DNLQGSLDGLAWGNCLSMGTSGMFDVIYSEK 1284
>ref|XP_004245657.1| PREDICTED: DNA-directed RNA polymerase D subunit 1 [Solanum
lycopersicum]
Length = 1446
Score = 856 bits (2212), Expect = 0.0
Identities = 481/1114 (43%), Positives = 682/1114 (61%), Gaps = 26/1114 (2%)
Frame = -1
Query: 3277 TPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXX 3098
TPN RV E GQ MIFD+ + Y++L+DF+ +AN+L V D
Sbjct: 228 TPNSHRVTEF------GQHMIFDESNRLYRKLIDFRGTANDLSMCVLDRIKVSKIRADRS 281
Query: 3097 XXXXXXSFNNKFDFPNKKPDSSKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGIP 2918
P++ TG ++VK+++L K T+++FRMV+VGDP I+LGEIGIP
Sbjct: 282 VI--------------NDPNAPATGLKYVKELVLAKRTNHAFRMVVVGDPNIELGEIGIP 327
Query: 2917 NDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVYR 2738
+AE L + E L+ NW+++ + +L++G ++VRR G + D L+ GD ++R
Sbjct: 328 CHVAENLHMAETLSLRNWERMTDLCDLMILQRGGILVRRNGVLVRISVMDGLQKGDIIHR 387
Query: 2737 PLEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVPQ 2558
PL +GD+VMINRPPS+HQHS+IALSV+ILP SV S+NPL+C P RGDFDGDCL Y+PQ
Sbjct: 388 PLVDGDVVMINRPPSIHQHSLIALSVRILPINSVLSINPLVCSPFRGDFDGDCLHGYIPQ 447
Query: 2557 SIDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLEMFS 2378
SIDS +EL E LS+SHDSL AA+L+ + V+L + Q+QQL+
Sbjct: 448 SIDSTIELSELVALKQQLLDGQNGQNLLSLSHDSLTAAHLILEPGVFLDRFQMQQLQ--- 504
Query: 2377 LHLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGKQ 2198
M AIVKAP I WTGKQ
Sbjct: 505 ---------------------------------MFCPRQLGMTAIVKAPPGNICYWTGKQ 531
Query: 2197 LLSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDILF 2018
L S+L+P D + FP N S+WL+D D+++ +LV++ G TLD+L+
Sbjct: 532 LFSLLLPSDLEYVFPSNGVCISEGEIVTSSGGSSWLRDASDNLFYSLVKHNGGDTLDLLY 591
Query: 2017 SAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLI--NR 1844
+AQ +L EW+SMRG SVSLSD+Y+S +S SR NM++EV GLQEA + + +I N+
Sbjct: 592 AAQTVLCEWLSMRGLSVSLSDLYISADSYSRENMIDEVCSGLQEAERLSYIQLLMIKYNK 651
Query: 1843 TCMENLLRDSEDTHNCE-TFEVDDDNRLYDLTEINIGAYQDVFRDVQRLVYHYASKENSM 1667
+ L +S+++ + F + L++ + A++ VFRD+Q LVY+YAS +NS+
Sbjct: 652 DFLSGNLEESKNSMGFDFEFMSIMQQKSASLSQASASAFKKVFRDIQNLVYNYASNDNSL 711
Query: 1666 LAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARN-----------HRDF 1520
LAM+++GSKG+LLKLV ++CLGLQ S P+SFR+P LSC A N H+
Sbjct: 712 LAMLKAGSKGNLLKLVQHNMCLGLQQSLVPVSFRMPRQLSCDAWNNHKSHLVIEKPHKVP 771
Query: 1519 DTPGSHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYL 1340
+ PGS+I AV+++SFL+GL+PLEC+VHS++ RDSSF +A++ GTL RK+MF+MRDLY+
Sbjct: 772 ECPGSYIPSAVVKSSFLAGLNPLECFVHSLTTRDSSFSGHADVSGTLNRKLMFFMRDLYV 831
Query: 1339 AYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGSDRRCGGEPVGSLAACSISEA 1160
YDGTVRNAYGNQ+VQFSY ++++ ST + + + + GG PVGSLAAC+ISEA
Sbjct: 832 GYDGTVRNAYGNQIVQFSYYEAEQIAST--KVTGEALESHNHAIGGHPVGSLAACAISEA 889
Query: 1159 AYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVK 980
AY ALD+P + ++FLSK+L R +G EYGA+EVK
Sbjct: 890 AYCALDQPVSALESSPLLNLKKILESGAGSRTGEKTASMFLSKRLGRWAHGFEYGALEVK 949
Query: 979 SHLEKVLFSEVISDTAIVFSEENCQ-THLSPWICHFHISKEEMQKKGLNVASISSALEKN 803
HLE++L SEV+S I FS E + TH PW+CHFHI KE ++ + L + S+ AL
Sbjct: 950 GHLERLLLSEVVSTVMICFSPETRKSTHNCPWVCHFHIDKENVKTRRLKLRSVLDALNMR 1009
Query: 802 CCSNLSKQKFELPVMHLDSRSHCSMA--GPETSCIVGTVDIEEGCSNP---LAGVRDVMM 638
+ +K +LP +H+ + CS+A E S I TV + E +P L +RDV++
Sbjct: 1010 YRAATTKAGNDLPNLHITCKD-CSVAEVQKEKSEICITVSVVETSKDPSSLLDTLRDVVI 1068
Query: 637 PFLLGTVIKGFVEVEKVDIVWNDLPRGSRTS--SSGELCLRVSMARKFKNLKFWSIIKNA 464
PFLL TVIKGF +KVDI+W +LP S++S +GEL L+V M+ +KFW+ + ++
Sbjct: 1069 PFLLETVIKGFSAFKKVDILWKELPSPSKSSRGPTGELYLQVFMSESCDRIKFWNALVDS 1128
Query: 463 CLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADR 284
CL I DLIDWERSYP+ ++D++ AYGI+ AW +F L S S+ GK IL EHL+L AD
Sbjct: 1129 CLQIRDLIDWERSYPDDVHDLTVAYGIDVAWEYFLCKLHSAVSETGKKILPEHLVLAADS 1188
Query: 283 LSFTGEFLGLTAKGLITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVA 113
L+ TGEF+ L+AKGL Q SPF QACF+ P +FV+AAK DDL G+L+++A
Sbjct: 1189 LTTTGEFVPLSAKGLTLQRKAAGVVSPFMQACFTNPGDSFVRAAKMGLSDDLQGSLESLA 1248
Query: 112 WGKKVPIGTGGNFEIIYSQKDYQV-DKLDIFNTL 14
WGK IGTG +F+I+YS K Y++ ++++++ L
Sbjct: 1249 WGKTPSIGTGSSFDIMYSGKGYELAEQINVYTLL 1282
>ref|XP_007158454.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
gi|561031869|gb|ESW30448.1| hypothetical protein
PHAVU_002G153700g [Phaseolus vulgaris]
Length = 1464
Score = 853 bits (2205), Expect = 0.0
Identities = 485/1129 (42%), Positives = 685/1129 (60%), Gaps = 41/1129 (3%)
Frame = -1
Query: 3277 TPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXX 3098
TPNC RV E+ ++ G + FDDRT++ K+LVDF+ +ANEL SR+
Sbjct: 228 TPNCHRVTEVPYAISNGNRLSFDDRTRSCKKLVDFRGTANELSSRL-------------- 273
Query: 3097 XXXXXXSFNNKFDFPNKKPDSS---KTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEI 2927
+ D KK + +G +W+KDV+LGK D++FR V+VGDP ++L EI
Sbjct: 274 -NPDKTPISIFADIQKKKVAENACNSSGLRWIKDVILGKRNDSTFRTVVVGDPSLELSEI 332
Query: 2926 GIPNDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDA 2747
GIP IAE L+V+E +N N +KL C RLLEKG + V RKG +FK +DL+IGD
Sbjct: 333 GIPCHIAESLQVSEYVNRQNLEKLLYCCELRLLEKGQINVCRKGSSIHLFKKEDLQIGDQ 392
Query: 2746 VYRPLEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCY 2567
YRPL +GD V+INRPPS+HQHS+IAL+V++LP SV +NPL C PLRGDFDGDCL Y
Sbjct: 393 FYRPLCDGDKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGY 452
Query: 2566 VPQSIDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLE 2387
+PQS+ +RVEL E LS+S DSL AAYLL +D V L Q+QQL
Sbjct: 453 IPQSVSARVELSELVALDKQLFNGQSGRNLLSLSEDSLTAAYLLMEDGVLLDVYQMQQL- 511
Query: 2386 MFSLHLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWT 2207
+ML + PAIVK+P+ S W+
Sbjct: 512 -----------------------------------QMLCNKGLAPPAIVKSPSSNSSFWS 536
Query: 2206 GKQLLSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLD 2027
GKQL SML+P DF++ FP + S WL+D+D +++ LV ++ K+L+
Sbjct: 537 GKQLFSMLLPSDFDYSFPSDGVVVSDGELVSSFEASGWLRDSDCNVFQGLVEHFQGKSLN 596
Query: 2026 ILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLIN 1847
LF+AQ +L EW+SM GFSVSLSD+YLS +S +R NM+EE+ GLQ+A +A K L++
Sbjct: 597 FLFAAQNVLCEWLSMTGFSVSLSDLYLSSDSYARKNMIEEICYGLQDAEKACNFKQLLLD 656
Query: 1846 RTCMENLLRDSEDTHNCETFEVDDDNRLYD------LTEINIGAYQDVFRDVQRLVYHYA 1685
C + L + E++ N T VD D+ Y+ L++ ++ A++ VFR++Q L YA
Sbjct: 657 CYC-DFLSGNHEESENSMT--VDADSLNYERQISAALSQASVDAFRHVFRNIQSLADKYA 713
Query: 1684 SKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARNHRD------ 1523
+N+ LAM ++GSK SL++L S+CLG+Q+S LS+R+P LSC+A N +
Sbjct: 714 CTDNTFLAMNKAGSKSSLVRLAQHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKGLDSIQ 773
Query: 1522 -----FDTPGSHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFY 1358
++ S+I AV+++SFL+GL+PLEC+VHSV+ R S F ENA++PGTL R++MF+
Sbjct: 774 IYSGTLESVQSYIPCAVVKSSFLTGLNPLECFVHSVTIRASGFSENADVPGTLTRRLMFF 833
Query: 1357 MRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGSDRRCGGEPVGSLAA 1178
MRDL+ AYDGTVRN YGNQL+QFSY + + + + K I GGEPVG+L+A
Sbjct: 834 MRDLFAAYDGTVRNLYGNQLIQFSYDIDENTSCDKSFKEYAI--------GGEPVGALSA 885
Query: 1177 CSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEY 998
++SEA YSALD+P K Q+V+LF S+K+ + +G EY
Sbjct: 886 SAVSEAGYSALDQPVSLLEASPLLNLKNVLECGSRKKNGDQSVSLFFSEKVGKQRHGFEY 945
Query: 997 GAIEVKSHLEKVLFSEVISDTAIVFS--EENCQTHLSPWICHFHISKEEMQKKGLNVASI 824
A+EVK++LE++LFS+++S I+F+ + + SPW+CHFH+ KE + ++ L V SI
Sbjct: 946 AALEVKNYLERLLFSKIVSTVMIIFTPPDSSSLEKYSPWVCHFHLDKEILMRRKLKVHSI 1005
Query: 823 SSALEKNCCSNLSKQKFELPVMHLDSRSHCSMAGP----ETSCI-------VGTVDIEEG 677
L + S ++ K + + S CS+ E CI TV I E
Sbjct: 1006 IDYLYQRYYSQSTEPKVGFTKLKISSNRKCSVDSTAKEGEDICIDKEDSDDCITVTIVEN 1065
Query: 676 CSNP--LAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPRG--SRTSSSGELCLRVSMA 509
NP L VRD+M+PF LGT IKGF++++KVDI+WN+ +G S SSGEL LRV++A
Sbjct: 1066 SENPIQLNSVRDLMIPFFLGTTIKGFMDIKKVDILWNNQSKGTNSYNGSSGELYLRVTVA 1125
Query: 508 RKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDI 329
+FW ++ N C IM +IDW RS+P++IN +S AYGI+ AW ++++SL S SD
Sbjct: 1126 SSGNTGRFWGVLVNHCHKIMQIIDWPRSHPDNINYLSSAYGIDVAWQYYYKSLASAISDT 1185
Query: 328 GKSILEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSPFNQACFSRPLFNFVQAAK 158
GKSIL +HL L+A+ +S +GEF+GL AKG+ Q S SPF QACFS P +F++AAK
Sbjct: 1186 GKSILPKHLRLLANSMSASGEFVGLNAKGMAQQRQHASVSSPFVQACFSNPGRSFIKAAK 1245
Query: 157 DEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQVDK-LDIFNTL 14
E D+L G+LDA+AWG +GT G F+IIYS+K ++VDK +D++ L
Sbjct: 1246 SELTDNLQGSLDALAWGNCPSMGTSGLFDIIYSEKGHEVDKAVDVYKLL 1294
>ref|XP_006477376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
[Citrus sinensis] gi|568847098|ref|XP_006477377.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
isoform X3 [Citrus sinensis]
gi|568847100|ref|XP_006477378.1| PREDICTED: DNA-directed
RNA polymerase IV subunit 1-like isoform X4 [Citrus
sinensis]
Length = 1443
Score = 851 bits (2198), Expect = 0.0
Identities = 481/1112 (43%), Positives = 674/1112 (60%), Gaps = 22/1112 (1%)
Frame = -1
Query: 3277 TPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXX 3098
TPN RV E+ + + + + FD+ T+ K++VD++ EL V DC
Sbjct: 229 TPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKS 288
Query: 3097 XXXXXXSFNNKFDFPNKKPD-SSKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGI 2921
K K D S+ +G +W+KDV+LGK D+ FRMV+ GDP IKL EIGI
Sbjct: 289 SRKDSAEVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGI 343
Query: 2920 PNDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVY 2741
P +AERL+++E LNSWNW++L++C + RLLEKG L V RKG + + D L++GD +Y
Sbjct: 344 PCHVAERLQISERLNSWNWERLSVCTSFRLLEKGELYVCRKGGLVRIRRIDALELGDIIY 403
Query: 2740 RPLEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVP 2561
RPL +GD+V+INRPPS+H HS+IAL+VK+LP SV ++NPL C P GDFDGDCL Y+P
Sbjct: 404 RPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIP 463
Query: 2560 QSIDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLEMF 2381
Q+I +RVEL E LS+ DSL AA+LL +D V L Q+QQ
Sbjct: 464 QAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQ---- 519
Query: 2380 SLHLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGK 2201
L+M H F SP I K + S+W+GK
Sbjct: 520 --------------------------------LQMFCPHRFLSPDIFKIS--KDSVWSGK 545
Query: 2200 QLLSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDIL 2021
QL SML+P DF + FP + S+WL+D + +++ L++ Y DK LD L
Sbjct: 546 QLFSMLLPPDFEYTFP-SKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYQDKVLDFL 604
Query: 2020 FSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLINRT 1841
++AQE+L EW+S+RG +VSLSD+YL+ +SCSR +++E+ GL+EA + +++
Sbjct: 605 YAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSH 664
Query: 1840 CMENLLRDSEDTHNCETFEVD----DDNRLYDLTEINIGAYQDVFRDVQRLVYHYASKEN 1673
N L +ED+ + + + + + R L++ ++ A++ VF D+Q L Y Y SK+N
Sbjct: 665 M--NFLMSAEDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDN 722
Query: 1672 SMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARNHR----DFDTPGS 1505
S+LAM ++GSKG+LLKLV SLCLGLQHS APLSFR P LSC+A N + + S
Sbjct: 723 SLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKS 782
Query: 1504 HILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGT 1325
+I AV+ NSFL+GL+PLEC++HSV++RDSSF +NA++PGTL R++MF+MRDL AYDGT
Sbjct: 783 YIPSAVVANSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGT 842
Query: 1324 VRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGSDRRCGGEPVGSLAACSISEAAYSAL 1145
VRNAYGNQ+VQFSY + T T + GG+ VGSL+AC+ISEAAYSAL
Sbjct: 843 VRNAYGNQIVQFSYNIEGTSTPTGE-------------IGGQSVGSLSACAISEAAYSAL 889
Query: 1144 DKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEK 965
D+P K+ Q ++LFLS KL + +G EYGA+EVK+HLE
Sbjct: 890 DQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLEC 949
Query: 964 VLFSEVISDTAIVFS-EENCQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNL 788
++ S+++S + I++S + H SPWICHFH+ KE M++ GL SI +L + C +
Sbjct: 950 LMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAAR 1009
Query: 787 SKQKFELPVMHLDSRSHCSMAGPETSC------IVGTVDIEEGCSNPLAGVRDVMMPFLL 626
++ K +P M L S CS + C V V+ + S L ++ +MPFLL
Sbjct: 1010 TELKISVPDM-LISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLL 1068
Query: 625 GTVIKGFVEVEKVDIVWNDLPRGSRT--SSSGELCLRVSMARKFKNLKFWSIIKNACLPI 452
TV+KGF E++KVDI+W D + S++ S GEL LRVSM+ + WS + N C I
Sbjct: 1069 KTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQI 1128
Query: 451 MDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFT 272
MD+IDW RS+P++I AYGI+A F +L+S SD GK+IL EHLL++A+ LS T
Sbjct: 1129 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1188
Query: 271 GEFLGLTAKGLITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKK 101
GEF+GL AKGL Q +S SPF QA FS P +F++AAK A D+L G++DA+ WGK
Sbjct: 1189 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1248
Query: 100 VPIGTGGNFEIIYSQKDYQVDK-LDIFNTLST 8
+GTGG+F+IIYS + + K +D++N LST
Sbjct: 1249 PSVGTGGHFDIIYSGEGRTLSKPVDVYNLLST 1280
>ref|XP_006477375.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Citrus sinensis]
Length = 1481
Score = 851 bits (2198), Expect = 0.0
Identities = 481/1112 (43%), Positives = 674/1112 (60%), Gaps = 22/1112 (1%)
Frame = -1
Query: 3277 TPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXX 3098
TPN RV E+ + + + + FD+ T+ K++VD++ EL V DC
Sbjct: 267 TPNNHRVTEVPHAFSHEKKLFFDNWTRHLKKMVDYRGRDIELSHLVQDCLKISKLHLDKS 326
Query: 3097 XXXXXXSFNNKFDFPNKKPD-SSKTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEIGI 2921
K K D S+ +G +W+KDV+LGK D+ FRMV+ GDP IKL EIGI
Sbjct: 327 SRKDSAEVRQK-----KNIDISNSSGLRWIKDVVLGKRNDDCFRMVVTGDPNIKLKEIGI 381
Query: 2920 PNDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDAVY 2741
P +AERL+++E LNSWNW++L++C + RLLEKG L V RKG + + D L++GD +Y
Sbjct: 382 PCHVAERLQISERLNSWNWERLSVCTSFRLLEKGELYVCRKGGLVRIRRIDALELGDIIY 441
Query: 2740 RPLEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCYVP 2561
RPL +GD+V+INRPPS+H HS+IAL+VK+LP SV ++NPL C P GDFDGDCL Y+P
Sbjct: 442 RPLTDGDIVLINRPPSIHPHSLIALTVKVLPISSVVTINPLCCSPFHGDFDGDCLHGYIP 501
Query: 2560 QSIDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLEMF 2381
Q+I +RVEL E LS+ DSL AA+LL +D V L Q+QQ
Sbjct: 502 QAIGARVELTELVALDKQLINQQSGRNLLSLGQDSLTAAHLLMEDSVLLSHLQMQQ---- 557
Query: 2380 SLHLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWTGK 2201
L+M H F SP I K + S+W+GK
Sbjct: 558 --------------------------------LQMFCPHRFLSPDIFKIS--KDSVWSGK 583
Query: 2200 QLLSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLDIL 2021
QL SML+P DF + FP + S+WL+D + +++ L++ Y DK LD L
Sbjct: 584 QLFSMLLPPDFEYTFP-SKDVYISGGKLISAEGSSWLRDYEGNLFQYLIKRYQDKVLDFL 642
Query: 2020 FSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLINRT 1841
++AQE+L EW+S+RG +VSLSD+YL+ +SCSR +++E+ GL+EA + +++
Sbjct: 643 YAAQEVLCEWLSVRGMTVSLSDLYLASHSCSRKILMDEIFYGLREAQDTCNFQQLMVDSH 702
Query: 1840 CMENLLRDSEDTHNCETFEVD----DDNRLYDLTEINIGAYQDVFRDVQRLVYHYASKEN 1673
N L +ED+ + + + + + R L++ ++ A++ VF D+Q L Y Y SK+N
Sbjct: 703 M--NFLMSAEDSESTRSLQGEHLSYEKQRSAALSQASVDAFKHVFWDIQNLAYKYGSKDN 760
Query: 1672 SMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARNHR----DFDTPGS 1505
S+LAM ++GSKG+LLKLV SLCLGLQHS APLSFR P LSC+A N + + S
Sbjct: 761 SLLAMFKAGSKGNLLKLVQHSLCLGLQHSLAPLSFRFPHELSCAAWNRLRAGDNTECAKS 820
Query: 1504 HILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFYMRDLYLAYDGT 1325
+I AV+ NSFL+GL+PLEC++HSV++RDSSF +NA++PGTL R++MF+MRDL AYDGT
Sbjct: 821 YIPSAVVANSFLTGLNPLECFIHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLCTAYDGT 880
Query: 1324 VRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGSDRRCGGEPVGSLAACSISEAAYSAL 1145
VRNAYGNQ+VQFSY + T T + GG+ VGSL+AC+ISEAAYSAL
Sbjct: 881 VRNAYGNQIVQFSYNIEGTSTPTGE-------------IGGQSVGSLSACAISEAAYSAL 927
Query: 1144 DKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEYGAIEVKSHLEK 965
D+P K+ Q ++LFLS KL + +G EYGA+EVK+HLE
Sbjct: 928 DQPISLLETSPLLNLKNVLECGSKKSNADQTMSLFLSNKLGKRRHGFEYGALEVKNHLEC 987
Query: 964 VLFSEVISDTAIVFS-EENCQTHLSPWICHFHISKEEMQKKGLNVASISSALEKNCCSNL 788
++ S+++S + I++S + H SPWICHFH+ KE M++ GL SI +L + C +
Sbjct: 988 LMLSDIVSTSMIIYSPQTGSMKHFSPWICHFHVRKEIMKRTGLKEHSIIDSLYRQCKAAR 1047
Query: 787 SKQKFELPVMHLDSRSHCSMAGPETSC------IVGTVDIEEGCSNPLAGVRDVMMPFLL 626
++ K +P M L S CS + C V V+ + S L ++ +MPFLL
Sbjct: 1048 TELKISVPDM-LISNKDCSSINMQKECNDAFCVTVMIVENFKRTSIDLETIQMWVMPFLL 1106
Query: 625 GTVIKGFVEVEKVDIVWNDLPRGSRT--SSSGELCLRVSMARKFKNLKFWSIIKNACLPI 452
TV+KGF E++KVDI+W D + S++ S GEL LRVSM+ + WS + N C I
Sbjct: 1107 KTVVKGFREIKKVDILWKDKQKASKSHDDSFGELYLRVSMSGQCHITSLWSALMNDCHQI 1166
Query: 451 MDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDIGKSILEEHLLLIADRLSFT 272
MD+IDW RS+P++I AYGI+A F +L+S SD GK+IL EHLL++A+ LS T
Sbjct: 1167 MDMIDWTRSHPDNIRSFCLAYGIDAGLQFFLTNLESAISDTGKNILPEHLLIVANTLSAT 1226
Query: 271 GEFLGLTAKGLITQ---TSTPSPFNQACFSRPLFNFVQAAKDEAKDDLSGTLDAVAWGKK 101
GEF+GL AKGL Q +S SPF QA FS P +F++AAK A D+L G++DA+ WGK
Sbjct: 1227 GEFVGLNAKGLALQRKHSSVSSPFVQAFFSNPGASFIKAAKAGAVDNLQGSVDALGWGKV 1286
Query: 100 VPIGTGGNFEIIYSQKDYQVDK-LDIFNTLST 8
+GTGG+F+IIYS + + K +D++N LST
Sbjct: 1287 PSVGTGGHFDIIYSGEGRTLSKPVDVYNLLST 1318
>ref|XP_007158453.1| hypothetical protein PHAVU_002G153700g [Phaseolus vulgaris]
gi|561031868|gb|ESW30447.1| hypothetical protein
PHAVU_002G153700g [Phaseolus vulgaris]
Length = 1463
Score = 850 bits (2197), Expect = 0.0
Identities = 485/1129 (42%), Positives = 686/1129 (60%), Gaps = 41/1129 (3%)
Frame = -1
Query: 3277 TPNCGRVVEMANLLTTGQSMIFDDRTKAYKRLVDFKRSANELGSRVADCXXXXXXXXXXX 3098
TPNC RV E+ ++ G + FDDRT++ K+LVDF+ +ANEL SR+
Sbjct: 228 TPNCHRVTEVPYAISNGNRLSFDDRTRSCKKLVDFRGTANELSSRL-------------- 273
Query: 3097 XXXXXXSFNNKFDFPNKKPDSS---KTGHQWVKDVMLGKMTDNSFRMVIVGDPRIKLGEI 2927
+ D KK + +G +W+KDV+LGK D++FR V+VGDP ++L EI
Sbjct: 274 -NPDKTPISIFADIQKKKVAENACNSSGLRWIKDVILGKRNDSTFRTVVVGDPSLELSEI 332
Query: 2926 GIPNDIAERLEVTECLNSWNWQKLNMCANSRLLEKGVLIVRRKGKKACVFKTDDLKIGDA 2747
GIP IAE L+V+E +N N +KL C RLLEKG + V RKG +FK +DL+IGD
Sbjct: 333 GIPCHIAESLQVSEYVNRQNLEKLLYCCELRLLEKGQINVCRKGSSIHLFKKEDLQIGDQ 392
Query: 2746 VYRPLEEGDLVMINRPPSLHQHSIIALSVKILPTGSVASLNPLICDPLRGDFDGDCLQCY 2567
YRPL +GD V+INRPPS+HQHS+IAL+V++LP SV +NPL C PLRGDFDGDCL Y
Sbjct: 393 FYRPLCDGDKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGY 452
Query: 2566 VPQSIDSRVELREXXXXXXXXXXXXXXXXXLSVSHDSLAAAYLLRKDDVYLKKAQIQQLE 2387
+PQS+ +RVEL E LS+S DSL AAYLL +D V L Q+QQL
Sbjct: 453 IPQSVSARVELSELVALDKQLFNGQSGRNLLSLSEDSLTAAYLLMEDGVLLDVYQMQQL- 511
Query: 2386 MFSLHLSPFPAIVKAPTPEVREDKACLHQGPIEQLEMLASHHFRSPAIVKAPNFQISMWT 2207
+ML + PAIVK+P+ S W+
Sbjct: 512 -----------------------------------QMLCNKGLAPPAIVKSPSSNSSFWS 536
Query: 2206 GKQLLSMLMPQDFNFDFPVNXXXXXXXXXXXXXXXSAWLQDTDDSIYSTLVRNYGDKTLD 2027
GKQL SML+P DF++ FP + S WL+D+D +++ LV ++ K+L+
Sbjct: 537 GKQLFSMLLPSDFDYSFPSDGVVVSDGELVSSFEASGWLRDSDCNVFQGLVEHFQGKSLN 596
Query: 2026 ILFSAQEILLEWISMRGFSVSLSDIYLSFNSCSRGNMVEEVSMGLQEATQAFRTKDFLIN 1847
LF+AQ +L EW+SM GFSVSLSD+YLS +S +R NM+EE+ GLQ+A +A K L++
Sbjct: 597 FLFAAQNVLCEWLSMTGFSVSLSDLYLSSDSYARKNMIEEICYGLQDAEKACNFKQLLLD 656
Query: 1846 RTCMENLLRDSEDTHNCETFEVDDDNRLYD------LTEINIGAYQDVFRDVQRLVYHYA 1685
C + L + E++ N T VD D+ Y+ L++ ++ A++ VFR++Q L YA
Sbjct: 657 CYC-DFLSGNHEESENSMT--VDADSLNYERQISAALSQASVDAFRHVFRNIQSLADKYA 713
Query: 1684 SKENSMLAMVRSGSKGSLLKLVHQSLCLGLQHSSAPLSFRVPSMLSCSARNHRD------ 1523
+N+ LAM ++GSK SL++L S+CLG+Q+S LS+R+P LSC+A N +
Sbjct: 714 CTDNTFLAMNKAGSKSSLVRLAQHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKGLDSIQ 773
Query: 1522 -----FDTPGSHILYAVIENSFLSGLDPLECYVHSVSNRDSSFGENAEIPGTLCRKIMFY 1358
++ S+I AV+++SFL+GL+PLEC+VHSV+ R S F ENA++PGTL R++MF+
Sbjct: 774 IYSGTLESVQSYIPCAVVKSSFLTGLNPLECFVHSVTIRASGFSENADVPGTLTRRLMFF 833
Query: 1357 MRDLYLAYDGTVRNAYGNQLVQFSYGVSDKVTSTEDEKSCQISTGSDRRCGGEPVGSLAA 1178
MRDL+ AYDGTVRN YGNQL+QFSY + + + + K I GGEPVG+L+A
Sbjct: 834 MRDLFAAYDGTVRNLYGNQLIQFSYDIDENTSCDKSFKEYAI--------GGEPVGALSA 885
Query: 1177 CSISEAAYSALDKPXXXXXXXXXXXXXXXXXXXXXKTAEVQNVTLFLSKKLKRLNYGSEY 998
++SEA YSALD+P K Q+V+LF S+K+ + +G EY
Sbjct: 886 SAVSEAGYSALDQPVSLLEASPLLNLKNVLECGSRKKNGDQSVSLFFSEKVGKQRHGFEY 945
Query: 997 GAIEVKSHLEKVLFSEVISDTAIVFS--EENCQTHLSPWICHFHISKEEMQKKGLNVASI 824
A+EVK++LE++LFS+++S I+F+ + + SPW+CHFH+ KE + ++ L V SI
Sbjct: 946 AALEVKNYLERLLFSKIVSTVMIIFTPPDSSSLEKYSPWVCHFHLDKEILMRRKLKVHSI 1005
Query: 823 SSALEKNCCSNLSKQKFELPVMHLDSRSHCSMAGP----ETSCI-------VGTVDIEEG 677
L + S ++ K + + S+ CS+ E CI TV I E
Sbjct: 1006 IDYLYQRYYSQSTEPKVGFTKLKISSKK-CSVDSTAKEGEDICIDKEDSDDCITVTIVEN 1064
Query: 676 CSNP--LAGVRDVMMPFLLGTVIKGFVEVEKVDIVWNDLPRG--SRTSSSGELCLRVSMA 509
NP L VRD+M+PF LGT IKGF++++KVDI+WN+ +G S SSGEL LRV++A
Sbjct: 1065 SENPIQLNSVRDLMIPFFLGTTIKGFMDIKKVDILWNNQSKGTNSYNGSSGELYLRVTVA 1124
Query: 508 RKFKNLKFWSIIKNACLPIMDLIDWERSYPNSINDVSHAYGIEAAWAHFFRSLKSVTSDI 329
+FW ++ N C IM +IDW RS+P++IN +S AYGI+ AW ++++SL S SD
Sbjct: 1125 SSGNTGRFWGVLVNHCHKIMQIIDWPRSHPDNINYLSSAYGIDVAWQYYYKSLASAISDT 1184
Query: 328 GKSILEEHLLLIADRLSFTGEFLGLTAKGLITQ---TSTPSPFNQACFSRPLFNFVQAAK 158
GKSIL +HL L+A+ +S +GEF+GL AKG+ Q S SPF QACFS P +F++AAK
Sbjct: 1185 GKSILPKHLRLLANSMSASGEFVGLNAKGMAQQRQHASVSSPFVQACFSNPGRSFIKAAK 1244
Query: 157 DEAKDDLSGTLDAVAWGKKVPIGTGGNFEIIYSQKDYQVDK-LDIFNTL 14
E D+L G+LDA+AWG +GT G F+IIYS+K ++VDK +D++ L
Sbjct: 1245 SELTDNLQGSLDALAWGNCPSMGTSGLFDIIYSEKGHEVDKAVDVYKLL 1293