BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00014686
         (1884 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera]   254   e-122
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   256   e-116
emb|CAN71553.1| hypothetical protein VITISV_034738 [Vitis vinifera]   249   e-113
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]   233   e-110
emb|CAN75900.1| hypothetical protein VITISV_033582 [Vitis vinifera]   189   5e-87
emb|CAN74064.1| hypothetical protein VITISV_028146 [Vitis vinifera]   180   1e-84
emb|CAN62423.1| hypothetical protein VITISV_020608 [Vitis vinifera]   187   2e-83
gb|AAB82754.1| retrofit [Oryza longistaminata]                        250   3e-80
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   247   5e-79
ref|XP_004986808.1| PREDICTED: uncharacterized protein LOC101773...   271   6e-79
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   256   4e-78
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc...   254   5e-78
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  244   2e-77
emb|CAN83285.1| hypothetical protein VITISV_004139 [Vitis vinifera]   262   3e-77
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   259   4e-77
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   256   4e-77
gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]     260   5e-77
ref|NP_001174286.1| Os05g0235100 [Oryza sativa Japonica Group] g...   260   5e-77
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]                  240   6e-77
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   256   6e-77

>emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera]
          Length = 1361

 Score =  254 bits (649), Expect(2) = e-122
 Identities = 134/259 (51%), Positives = 170/259 (65%)
 Frame = +2

Query: 1103 LAA*GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVF 1282
            L A G SQ  G+D  +TFSPVV+ +T+R +L+L ++    + QLDV NAFLHG L E+V+
Sbjct: 904  LVAQGFSQVHGLDFGDTFSPVVRPATVRIILSLAVTSGWRLHQLDVKNAFLHGFLNEEVY 963

Query: 1283 MRHPKGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFIYKS 1462
            M  P G+ DP  P  VC LK+ LYGLKQAPRA F +F  FL +HGF  S  D+S+F Y S
Sbjct: 964  MEQPPGYTDPQFPQHVCRLKRALYGLKQAPRAWFHRFSSFLLKHGFHSSQADSSLFFYHS 1023

Query: 1463 GSSMLLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLLL 1642
                + +LLYVDD+I+TGS+  L+H+FIT LS E SMKDLGDLH+FLG+E       L L
Sbjct: 1024 SLGTVYLLLYVDDMIITGSTPSLVHTFITRLSNEFSMKDLGDLHYFLGVEVQANEKGLFL 1083

Query: 1643 SQKKYVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTLT 1822
            SQ KY L LLQ+A M+   P +T    G  +S   G + +  D   +R L G LQYLT+T
Sbjct: 1084 SQTKYALDLLQRASMIDAKPISTPFVVGQHLS-AEGTLFS--DPTLFRSLAGALQYLTIT 1140

Query: 1823 RPDLCFVVNYVCQFMHIPT 1879
            RPDL F VN + QFMH PT
Sbjct: 1141 RPDLSFSVNSIFQFMHAPT 1159



 Score =  214 bits (546), Expect(2) = e-122
 Identities = 134/363 (36%), Positives = 188/363 (51%), Gaps = 11/363 (3%)
 Frame = +3

Query: 48   CGGAYELTKGQFKNFLDSTGIILRISCPHTQPQNGIAERKHSHETEVGKTLSFKACLPKK 227
            C G  E T  +F++ L S GI LR++CP+T  QNGI ERKH + TE+G TL F A +P  
Sbjct: 544  CDGGTEFTNNKFRSHLHSCGIDLRLACPYTPSQNGIVERKHRYVTEIGLTLMFHARVPLS 603

Query: 228  FWFVAFLTATFLINKTPAKVLNFRSSFEVLYNDLPDYSLLRVFGCSCYPNLIAY*HDKLS 407
             W  AF TA FLIN+ P   L  ++ +E+L+   PDYS+LR FGC C+P L  Y  +KLS
Sbjct: 604  LWDEAFSTAVFLINRLPPPSLAGKTPYELLFGKQPDYSMLRTFGCLCFPYLRDYSPNKLS 663

Query: 408  PKSSRCVFLGYNTLCKGYKCQDPLTKRTFVSRNVTFDETSFPFS--KSLDTPS---ISHI 572
            PKS+ CVFLGY+TL KG++C D  T R +VSR+V F E +FP++     + PS     H 
Sbjct: 664  PKSTPCVFLGYSTLHKGFRCLDRKTHRVYVSRHVQFYEHTFPYNGDSVQNLPSNIDYIHF 723

Query: 573  SEVDEMVTIPIGV-TSMSLPA-----XXXXXXXXXXXXXXXXXXXXXITHAEPATNEIII 734
            SE  E V+    V TS SLP+                          +   E +  + + 
Sbjct: 724  SESQECVSSSSNVSTSDSLPSPSFSNSLCLPCNDIPHLSSTSSPGLQVPLDEDSLLDSVA 783

Query: 735  QEEPAPVPVXXXXXXXXXXXXXXFKRKQLPSDFVAHHASLYSLPLALTFVLHSEVEPKNY 914
             +   P P+               + K        +HA   S    L     +  EP+ +
Sbjct: 784  TDSTTPSPISSSPRVTTSNHPMITRGKAGIFKPRLYHAMHISSSSQLFQAFLALKEPRGF 843

Query: 915  XXXXXXXXXXXSMRTENNALRENDTWDLVPYVEGMNVLGSKWVYKIKYNSDGTIERYKSR 1094
                       +M  E +AL++NDTW LVP  +  NV+G +W++K K +SDG+IER+K+R
Sbjct: 844  KSAAKHPEWLSAMDDEIHALKKNDTWVLVPRPQHHNVVGCRWIFKTKLHSDGSIERHKAR 903

Query: 1095 LGA 1103
            L A
Sbjct: 904  LVA 906


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  256 bits (653), Expect(2) = e-116
 Identities = 133/259 (51%), Positives = 172/259 (66%)
 Frame = +2

Query: 1103 LAA*GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVF 1282
            L A G  QQ GID  +TFSPVVK STIR VL+L +S+   +RQLDV NAFLHG L E V+
Sbjct: 989  LVAKGFKQQYGIDYDDTFSPVVKHSTIRLVLSLAVSQKWSLRQLDVQNAFLHGILEETVY 1048

Query: 1283 MRHPKGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFIYKS 1462
            M+ P GF D  HP++ CHL+K LYGLKQ PRA + +    L   GFV S  D S+FIY +
Sbjct: 1049 MKQPPGFADTTHPNYHCHLQKSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYNA 1108

Query: 1463 GSSMLLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLLL 1642
             S+ + +L+YVDDII+TGSS   + + +  L  + ++KDLGDLH+FLGIE  R  D LLL
Sbjct: 1109 HSTAIYILVYVDDIIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGLLL 1168

Query: 1643 SQKKYVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTLT 1822
             Q+KY   LL++  M  C P  T V +  ++S   G +L+  +   YR +VG LQYLTLT
Sbjct: 1169 CQEKYARDLLKRVGMECCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYLTLT 1228

Query: 1823 RPDLCFVVNYVCQFMHIPT 1879
            RPDL + +N VCQF+H PT
Sbjct: 1229 RPDLSYAINRVCQFLHAPT 1247



 Score =  193 bits (490), Expect(2) = e-116
 Identities = 142/434 (32%), Positives = 192/434 (44%), Gaps = 70/434 (16%)
 Frame = +3

Query: 12   ENFLSTTILAFQC--GGAYELTKGQFKNFLDSTGIILRISCPHTQPQNGIAERKHSHETE 185
            E      I+AFQ   GG YE     FK      GI  ++SCPHT  QNG AERKH H  E
Sbjct: 570  ERMFGRKIIAFQSDWGGEYEKLNAHFKTI----GIHHQVSCPHTHQQNGAAERKHRHIVE 625

Query: 186  VGKTLSFKACLPKKFWFVAFLTATFLINKTPAKVLNFRSSFEVLYNDLPDYSLLRVFGCS 365
            VG  L  ++ +P K+W  AFL A +LIN+TP+K +   +    L    PDYS LR+FGC+
Sbjct: 626  VGLALLAQSSMPLKYWDHAFLAAVYLINRTPSKTIAHDTPLHKLTGATPDYSSLRIFGCA 685

Query: 366  CYPNLIAY*HDKLSPKSSRCVFLGYNTLCKGYKCQDPLTKRTFVSRNVTFDETSFPFSKS 545
            C+PNL  Y   KL  +S+RCVFLGY+ + KG+KC D  T R ++SR+V FDE  FPF+  
Sbjct: 686  CWPNLRPYNQHKLQFRSTRCVFLGYSNMHKGFKCLDISTGRIYISRDVVFDEHVFPFASL 745

Query: 546  LDTPSISHISEV---------DEMVT------------IPI---------------GVTS 617
                 + + SEV         + M+T            +P                  T+
Sbjct: 746  NKNAGVKYTSEVLLLPHDSCGNNMLTDHANNLPGSSSPLPFLAQHFLQGNSEVPTSNNTA 805

Query: 618  MSLPAXXXXXXXXXXXXXXXXXXXXXITHAEPATNEIIIQEEPAP--------VPVXXXX 773
            M+LPA                     +  A PA   +    EPAP         PV    
Sbjct: 806  MALPA----SGPNEVSVPPALVPSSLVPAASPAPTGVSANAEPAPEADSLSSGPPVATES 861

Query: 774  XXXXXXXXXXFKRKQLPSDFVAHHASLYSLPLAL----TFVLHSEVEPKNYXXXXXXXXX 941
                          Q P   VAH     S PL+     T + H   +PK +         
Sbjct: 862  VTGVPDADPLL---QAPGSSVAHQTP-DSAPLSAAAPRTRLQHGISKPKQFTDGTVRYGN 917

Query: 942  XXSMRTENNALRE--------------------NDTWDLVPYVEGMNVLGSKWVYKIKYN 1061
              +  TE +++ E                    N+TW LVP     N++  KWV+K+KYN
Sbjct: 918  AAARITEPSSVSEALADPQWRAAMEAEFQALQKNNTWTLVPPDRTRNLIDCKWVFKVKYN 977

Query: 1062 SDGTIERYKSRLGA 1103
            +DG+I+R K+RL A
Sbjct: 978  ADGSIDRLKARLVA 991


>emb|CAN71553.1| hypothetical protein VITISV_034738 [Vitis vinifera]
          Length = 1312

 Score =  249 bits (636), Expect(2) = e-113
 Identities = 132/259 (50%), Positives = 173/259 (66%)
 Frame = +2

Query: 1103 LAA*GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVF 1282
            L A G  Q  GID FETFSPVVK  TIR VL++ +S N PI+QLDV NAFL+G+L E VF
Sbjct: 863  LVAQGFHQTYGIDFFETFSPVVKPCTIRLVLSIAVSSNWPIKQLDVHNAFLNGDLQEQVF 922

Query: 1283 MRHPKGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFIYKS 1462
            M  P GFED   P  VC L+K LYGLKQAPRA F K   FL Q GF  S  D S+F + S
Sbjct: 923  MMQPPGFEDNSCPTHVCRLQKALYGLKQAPRAWFHKLSSFLLQIGFQCSRADASLFYFHS 982

Query: 1463 GSSMLLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLLL 1642
             S ++++L+YVDDI++TGS+   +H  I+ LS   +++DLGD+ +FLGIE TR +  L L
Sbjct: 983  ASDIIILLIYVDDILITGSNPSRVHQIISQLSSHFALRDLGDISYFLGIEVTRRSHALHL 1042

Query: 1643 SQKKYVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTLT 1822
            +Q++Y+  LL++A++     A+T    G  +S   G  L+ +DA  YR LVG LQY+TLT
Sbjct: 1043 NQQRYIHQLLERANLHEAKSASTPGALGKLLSAADGEPLSALDATHYRSLVGALQYITLT 1102

Query: 1823 RPDLCFVVNYVCQFMHIPT 1879
            RP++ F VN  CQ+M  PT
Sbjct: 1103 RPEISFAVNRACQYMARPT 1121



 Score =  189 bits (480), Expect(2) = e-113
 Identities = 124/373 (33%), Positives = 169/373 (45%), Gaps = 9/373 (2%)
 Frame = +3

Query: 12   ENFLSTTILAFQCGGAYELTKGQFKNFLDSTGIILRISCPHTQPQNGIAERKHSHETEVG 191
            EN   TTI   Q     E        FL   GI+ R SCP+T  QNG  ERK  H  E G
Sbjct: 519  ENQFQTTIKCLQTBHGGEFIA--LXKFLSLHGILHRFSCPYTPEQNGRVERKMRHVVETG 576

Query: 192  KTLSFKACLPKKFWFVAFLTATFLINKTPAKVLNFRSSFEVLYNDLPDYSLLRVFGCSCY 371
             TL + A LP KFW  AF TA  LIN  P+ +LN+ S F +LY   PDY   +VFGC CY
Sbjct: 577  LTLLYTATLPSKFWXYAFTTAVTLINCMPSPLLNYSSPFSLLYKHPPDYFHFKVFGCLCY 636

Query: 372  PNLIAY*HDKLSPKSSRCVFLGYNTLCKGYKCQDPLTKRTFVSRNVTFDETSFPFSKSLD 551
            P+L     +K  P+S+ C+FLGY    KGY C +P T R ++SR+V F ET+FPF ++L 
Sbjct: 637  PHLKHLNSNKFQPRSTPCIFLGYAPSHKGYLCLNPTTNRVYISRHVVFAETTFPF-QALS 695

Query: 552  TPS--ISHISEV-------DEMVTIPIGVTSMSLPAXXXXXXXXXXXXXXXXXXXXXITH 704
             PS    HI            ++  P   + ++ P+                        
Sbjct: 696  XPSQQSXHIPVTPXFPLPPSPILFPPTTSSXLATPSEXAPTSPPASSLSLPPLIQVPFVD 755

Query: 705  AEPATNEIIIQEEPAPVPVXXXXXXXXXXXXXXFKRKQLPSDFVAHHASLYSLPLALTFV 884
                T    +Q+  AP+P                K+K                    T++
Sbjct: 756  EAAETPTTSLQDSTAPIP---GHPMITRSKSGICKKK--------------------TYL 792

Query: 885  LHSEVEPKNYXXXXXXXXXXXSMRTENNALRENDTWDLVPYVEGMNVLGSKWVYKIKYNS 1064
                +EP+             +M  E  AL +N TW LVP      ++G KWV+K+K+  
Sbjct: 793  TSLTIEPRTVKQALQDPNWKVAMEQEYQALLKNQTWSLVPPPSNAKIIGCKWVFKLKHKP 852

Query: 1065 DGTIERYKSRLGA 1103
            +G+I+RYK+RL A
Sbjct: 853  NGSIDRYKARLVA 865


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score =  233 bits (595), Expect(2) = e-110
 Identities = 128/259 (49%), Positives = 165/259 (63%)
 Frame = +2

Query: 1103 LAA*GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVF 1282
            L A G +Q  G+D FETFSPVVK +TIR +LT+ LS    IRQLDV NAFL+G L E V+
Sbjct: 952  LVAKGYNQTHGLDYFETFSPVVKAATIRIILTVALSFKWEIRQLDVHNAFLNGELEEQVY 1011

Query: 1283 MRHPKGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFIYKS 1462
            M  P G+ DP  P+ VC LKK LYGLKQAPRA F++    L Q GF  S  D+SMF++  
Sbjct: 1012 MSQPPGYFDPQFPNRVCRLKKALYGLKQAPRAWFQRLSSALLQWGFSMSRTDSSMFLHFG 1071

Query: 1463 GSSMLLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLLL 1642
             ++ L++L+YVDDI++TGSS   + S I  L    +++DLG L FFLGIE +    ++ L
Sbjct: 1072 KATTLIVLVYVDDILVTGSSSTQISSLIAKLDSVFALRDLGQLSFFLGIEVSYNEGSMTL 1131

Query: 1643 SQKKYVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTLT 1822
            SQ KY+  LL + ++    PA T    G  +S   G  + DV    YR +VG LQY+TLT
Sbjct: 1132 SQTKYISDLLHRTELFDTKPANTPGAVGKNLSKFDGDPMTDV--THYRSVVGALQYVTLT 1189

Query: 1823 RPDLCFVVNYVCQFMHIPT 1879
            RPD+ F VN  CQFM  PT
Sbjct: 1190 RPDIAFAVNKACQFMQQPT 1208



 Score =  196 bits (497), Expect(2) = e-110
 Identities = 127/373 (34%), Positives = 171/373 (45%), Gaps = 9/373 (2%)
 Frame = +3

Query: 12   ENFLSTTILAFQCGGAYELTKGQFKNFLDSTGIILRISCPHTQPQNGIAERKHSHETEVG 191
            EN   T I   Q     E     F +FL + GI  R SCP+   QNG  ERKH H  E G
Sbjct: 602  ENQFDTKIKCLQSDNGGEFRS--FTSFLQAVGIAHRFSCPYNSXQNGRVERKHRHVVETG 659

Query: 192  KTLSFKACLPKKFWFVAFLTATFLINKTPAKVLNFRSSFEVLYNDLPDYSLLRVFGCSCY 371
              L   A LP K+W  AF T TFLIN+ P+KVL + S +  L+   PDY   RVFGC CY
Sbjct: 660  LALLSHASLPMKYWHYAFQTXTFLINRMPSKVLEYDSPYFTLFRRHPDYKSFRVFGCLCY 719

Query: 372  PNLIAY*HDKLSPKSSRCVFLGYNTLCKGYKCQDPLTKRTFVSRNVTFDETSFPFSKSLD 551
            P +  Y   KL  +S +C+FLGY+   KG+ C D  T R +++ +V FDE++FP ++S  
Sbjct: 720  PFIRPYNTHKLQYRSVQCLFLGYSLNHKGFLCLDYATGRVYITPHVVFDESTFPLAQS-- 777

Query: 552  TPSISHISEVDEMVTIPIGVTSMSLPAXXXXXXXXXXXXXXXXXXXXXITHAEPATNEII 731
              S S  ++     + P  +T  S P                      I+HA   ++ + 
Sbjct: 778  -KSSSSSNDTSAEGSTPALITPPSFPC---------------LLPDSKISHASIDSHSLS 821

Query: 732  IQEEPAPVPVXXXXXXXXXXXXXXFKRKQLPSDFVAHHA------SLYSLPLALTFVLHS 893
              E P P                    K +P   +   A      S+  +    T +  S
Sbjct: 822  TSESPIPTTSSSPLDTSSSSPAIDLSPKSVPEPQITALAPRMTTRSMRGITKKKTILDLS 881

Query: 894  EV---EPKNYXXXXXXXXXXXSMRTENNALRENDTWDLVPYVEGMNVLGSKWVYKIKYNS 1064
             +   EP              +M  E  AL  N TWDLV     +NV+G KWVYK+K+  
Sbjct: 882  AIKVSEPSTLKQAFKDPNWTKAMEMEIAALHRNHTWDLVEQPPNVNVIGCKWVYKLKHKP 941

Query: 1065 DGTIERYKSRLGA 1103
            DG+IERYK+RL A
Sbjct: 942  DGSIERYKARLVA 954


>emb|CAN75900.1| hypothetical protein VITISV_033582 [Vitis vinifera]
          Length = 1041

 Score =  189 bits (479), Expect(2) = 5e-87
 Identities = 105/259 (40%), Positives = 153/259 (59%), Gaps = 1/259 (0%)
 Frame = +2

Query: 1103 LAA*GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVF 1282
            L A G +Q  G D   TFSPV KI+++R +L++    + P+ QLD+ NAFLHG+L E+V+
Sbjct: 610  LVAKGYTQVYGSDYGGTFSPVAKIASVRLLLSMAAMCSWPLYQLDIKNAFLHGDLAEEVY 669

Query: 1283 MRHPKGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFI-YK 1459
            M  P GF        VC L++ LYGLKQ+PRA F +F   + + G +RS  D S+F  + 
Sbjct: 670  MEQPPGFVAQGESGLVCRLRRSLYGLKQSPRAWFSRFSSVVQEFGMLRSTADHSVFYHHN 729

Query: 1460 SGSSMLLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLL 1639
            S    + +++YVDDI++TGS    +      L      KDLG L +FLGIE  +++  ++
Sbjct: 730  SLGQCIYLVVYVDDIVITGSDQDGIQKLKQHLFTHFQTKDLGKLKYFLGIEIAQSSSGVV 789

Query: 1640 LSQKKYVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTL 1819
            LSQ+KY L +L++  +L C P  T +    ++    G  L D     YR+LVG L YLT+
Sbjct: 790  LSQRKYALDILEETGILDCKPVDTPMDPNVKLVPGQGEPLGDPGR--YRRLVGKLNYLTI 847

Query: 1820 TRPDLCFVVNYVCQFMHIP 1876
            TRPD+ F V+ V QF+  P
Sbjct: 848  TRPDISFPVSVVSQFLQSP 866



 Score =  161 bits (408), Expect(2) = 5e-87
 Identities = 115/364 (31%), Positives = 169/364 (46%), Gaps = 6/364 (1%)
 Frame = +3

Query: 30   TILAFQCGGAYELTKGQFKNFLDSTGIILRISCPHTQPQNGIAERKHSHETEVGKTLSFK 209
            +I   +   A E     F +F+   GI+ + SC HT  QNG+AER + H  E   T+   
Sbjct: 286  SIRVLRSDNARECFSAPFTSFMSHHGILHQSSCAHTPQQNGVAERNNRHLVETAXTILLH 345

Query: 210  ACLPKKFWFVAFLTATFLINKTPAKVLNFRSSFEVLYNDLPDYSLL-RVFGCSCYPNLIA 386
            + +P +FW  A LTA +LIN+ P+ VL+ +    +L+ D P Y L  RVFGC+C+ +++ 
Sbjct: 346  SNVPFRFWGDAVLTACYLINRMPSSVLHDQIPHSLLFPDQPLYFLPPRVFGCTCFVHILT 405

Query: 387  Y*HDKLSPKSSRCVFLGYNTLCKGYKCQDPLTKRTFVSRNVTFDETSFPFSKSLDTPSIS 566
               DKLS K+ +C+FLGY+ L KGY+C    T R F+S +VTF E         D+P  S
Sbjct: 406  PGQDKLSAKAMKCLFLGYSRLQKGYRCYSLETHRYFISADVTFFE---------DSPFFS 456

Query: 567  HISE---VDEMVTIPIGVTSMSLPAXXXXXXXXXXXXXXXXXXXXXITHAEPATNEIIIQ 737
              SE   V E++ IPI     ++P                      + H  P        
Sbjct: 457  TTSESLPVXEVLPIPIVSPPDAMPPRPLQ-----------------VYHRRPPV------ 493

Query: 738  EEPAPVPVXXXXXXXXXXXXXXFKRKQLPSDFVAHH--ASLYSLPLALTFVLHSEVEPKN 911
               AP+P                +      +F+++H  +S YS   A    + S   PK+
Sbjct: 494  --VAPLPFAEAPAIAVRKGTRSTRNPHPIYNFLSYHRLSSPYS---AXVSAISSXSLPKS 548

Query: 912  YXXXXXXXXXXXSMRTENNALRENDTWDLVPYVEGMNVLGSKWVYKIKYNSDGTIERYKS 1091
                        +M  E  AL  N TWDLV    G + +G +WVY +K   DG ++R K+
Sbjct: 549  THEALSHPSWRQAMVDEMAALHSNGTWDLVVLPSGKSTVGCRWVYAVKVGPDGQVDRLKA 608

Query: 1092 RLGA 1103
            RL A
Sbjct: 609  RLVA 612


>emb|CAN74064.1| hypothetical protein VITISV_028146 [Vitis vinifera]
          Length = 1203

 Score =  180 bits (457), Expect(2) = 1e-84
 Identities = 102/259 (39%), Positives = 150/259 (57%), Gaps = 1/259 (0%)
 Frame = +2

Query: 1103 LAA*GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVF 1282
            L A G +Q  G D  +TFSPV KI+++R +L++    + P+ QLD+ NAFL+G+L E+V+
Sbjct: 756  LVAKGYTQVYGSDYGDTFSPVAKIASVRLLLSMAAMCSWPLYQLDIKNAFLYGDLAEEVY 815

Query: 1283 MRHPKGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFI-YK 1459
            M  P  F        VC L + LYGLK   RA F++F   + + G +RS  D S+F  + 
Sbjct: 816  MEQPPSFVAQGESGLVCRLHRSLYGLKHFSRAWFDRFSSVVQEFGMLRSTTDHSVFYHHN 875

Query: 1460 SGSSMLLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLL 1639
            S    + +++YVDDI++TGS    +      L      KDLG L +FLGIE  +++  ++
Sbjct: 876  SLGQCIYLVVYVDDIVITGSDQDDIQKLKQHLFTHFQTKDLGKLKYFLGIEIAQSSSGVV 935

Query: 1640 LSQKKYVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTL 1819
            LSQ+KY L +L++  ML C P  T +    ++    G  L D     YR+LVG L YLT+
Sbjct: 936  LSQRKYALDILEETGMLDCKPIDTPMDPNVKLVPGQGEPLGDXGR--YRRLVGKLNYLTI 993

Query: 1820 TRPDLCFVVNYVCQFMHIP 1876
            TRPD+ F V+ V QF+  P
Sbjct: 994  TRPDISFPVSVVSQFLQSP 1012



 Score =  162 bits (410), Expect(2) = 1e-84
 Identities = 114/360 (31%), Positives = 171/360 (47%), Gaps = 2/360 (0%)
 Frame = +3

Query: 30   TILAFQCGGAYELTKGQFKNFLDSTGIILRISCPHTQPQNGIAERKHSHETEVGKTLSFK 209
            +I   +   A E     F +F+   GI+   SC HT  QNG+AERK+    E  +T+   
Sbjct: 422  SIXVLRSDNAXEYFSXPFTSFMSHNGILHXSSCAHTPQQNGVAERKNRXLVETARTILLH 481

Query: 210  ACLPKKFWFVAFLTATFLINKTPAKVLNFRSSFEVLYNDLPDYSLLR-VFGCSCYPNLIA 386
              +P +FW  A LTA +LIN+ P+ VL+ +    +L+ D P Y L   VFGC+C+ +++ 
Sbjct: 482  XNVPFRFWGDAVLTACYLINRMPSSVLHDQIPHFLLFPDQPLYFLXPCVFGCTCFVHILT 541

Query: 387  Y*HDKLSPKSSRCVFLGYNTLCKGYKCQDPLTKRTFVSRNVTFDETSFPFSKSLDTPSIS 566
               DKLS K+ +C+FLGY+ L KGY+C    T R F+S +VTF E S  FS S ++  +S
Sbjct: 542  PGQDKLSAKAMKCLFLGYSKLQKGYRCYSLETHRYFISADVTFFEDSPFFSTSSESLPVS 601

Query: 567  HISEVDEMVTIPIGVTSMSLPAXXXXXXXXXXXXXXXXXXXXXITHAE-PATNEIIIQEE 743
                  E++ +PI   S  +P                      ++ AE PA +  I    
Sbjct: 602  ------EVLPLPIVSPSDVVP------PRPLQVYHRHPRVAAPLSFAEAPADSLPIPSAS 649

Query: 744  PAPVPVXXXXXXXXXXXXXXFKRKQLPSDFVAHHASLYSLPLALTFVLHSEVEPKNYXXX 923
            PAP                 +   +L S + A  +++ S+ L           PK+    
Sbjct: 650  PAPTLPSPDDTHCYSEKYSLYSYHRLSSPYSAFVSAISSVSL-----------PKSTHEA 698

Query: 924  XXXXXXXXSMRTENNALRENDTWDLVPYVEGMNVLGSKWVYKIKYNSDGTIERYKSRLGA 1103
                    +M  E +AL  N TWDLV    G + +G +WVY +K   DG ++R K+RL A
Sbjct: 699  LSHPGWRQAMVDEMDALHSNGTWDLVVLPSGKSTVGCRWVYAVKVGPDGQVDRLKARLVA 758


>emb|CAN62423.1| hypothetical protein VITISV_020608 [Vitis vinifera]
          Length = 1177

 Score =  187 bits (474), Expect(2) = 2e-83
 Identities = 104/259 (40%), Positives = 152/259 (58%), Gaps = 1/259 (0%)
 Frame = +2

Query: 1103 LAA*GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVF 1282
            L A G +Q  G D  +TFS V KI+++R +L++    + P+ QLD+ NAFLHG+L E+V+
Sbjct: 837  LVAKGYTQVYGSDYGDTFSLVAKIASVRLLLSMAAMCSWPLYQLDIKNAFLHGDLAEEVY 896

Query: 1283 MRHPKGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFI-YK 1459
            M  P GF        VC L++ LYGLKQ+PRA F +F   + + G +R+  D S+F  + 
Sbjct: 897  MEQPPGFVAQGESGLVCRLRRSLYGLKQSPRAWFGRFSSVVQEFGMLRNTADHSVFYHHN 956

Query: 1460 SGSSMLLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLL 1639
            S    + +++YVDDI++TGS    +      L      KDLG   +FLGIE  +++  ++
Sbjct: 957  SLGQCIYLVVYVDDIVITGSDQDGIQKLKQHLFTHFQTKDLGKXKYFLGIEIAQSSSGVV 1016

Query: 1640 LSQKKYVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTL 1819
            LSQ+KY L +L++  ML C P  T +    ++    G  L D     YR+LVG L YLT+
Sbjct: 1017 LSQRKYALBILEETGMLDCKPIDTPIDPNVKLVPGQGKPLGDPGR--YRRLVGKLNYLTI 1074

Query: 1820 TRPDLCFVVNYVCQFMHIP 1876
            TRPD+ F VN V QF+  P
Sbjct: 1075 TRPDISFPVNVVSQFLQSP 1093



 Score =  151 bits (382), Expect(2) = 2e-83
 Identities = 108/366 (29%), Positives = 165/366 (45%), Gaps = 2/366 (0%)
 Frame = +3

Query: 12   ENFLSTTILAFQCGGAYELTKGQFKNFLDSTGIILRISCPHTQPQNGIAERKHSHETEVG 191
            +   + +I   +   A E     F +F+    I+ + SC HT  QNGIAERK+ H  E  
Sbjct: 496  QTXFNISIRVLRSDNAREYFSAPFTSFMSHHEILHQSSCAHTPQQNGIAERKNRHLVETA 555

Query: 192  KTLSFKACLPKKFWFVAFLTATFLINKTPAKVLNFRSSFEVLYNDLPDYSLLRVFGCSCY 371
            +T+   + +P +FW  A LTA +LIN+ P+ VL         ++ +P +   RVFGC+C+
Sbjct: 556  RTILLHSNVPFRFWGDAILTACYLINRMPSSVL---------HDQIPHFLPPRVFGCTCF 606

Query: 372  PNLIAY*HDKLSPKSSRCVFLGYNTLCKGYKCQDPLTKRTFVSRNVTFDETSFPFSKSLD 551
             +++    DKL  K+ +C+FLGY+ L K Y+C    T R F+S NVTF E S  FS + +
Sbjct: 607  VHILTPGQDKLFAKAMKCLFLGYSRLQKXYRCYSLETHRYFISANVTFFEDSPFFSTTSE 666

Query: 552  TPSISHISEVDEMVTIPIGVTSMSLPAXXXXXXXXXXXXXXXXXXXXXITHAE-PATNEI 728
            +  +S +        +P+ + S S                        +  AE PA +  
Sbjct: 667  SLPVSKV--------LPLSIVSPS----DVVPPRPLQVYHRRPRVAAPLPFAEAPADSLP 714

Query: 729  IIQEEPAPVPVXXXXXXXXXXXXXXFKRKQLPS-DFVAHHASLYSLPLALTFVLHSEVEP 905
            I    P P                 F R   P  +F+++H  L S   A    +     P
Sbjct: 715  IPSASPTPALPSPDDLPIAIRKGTRFTRNPHPIYNFLSYHR-LSSPYFAFVSTIFFVSLP 773

Query: 906  KNYXXXXXXXXXXXSMRTENNALRENDTWDLVPYVEGMNVLGSKWVYKIKYNSDGTIERY 1085
            K+            +M  E  AL  N TWDL+    G + +G +WVY +K   DG ++  
Sbjct: 774  KSTHEALSHPGWRQAMVDEMAALHSNGTWDLIVLPSGKSTVGCRWVYAVKVGPDGQVDHL 833

Query: 1086 KSRLGA 1103
            K+RL A
Sbjct: 834  KARLVA 839


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  250 bits (639), Expect(2) = 3e-80
 Identities = 126/259 (48%), Positives = 175/259 (67%)
 Frame = +2

Query: 1103 LAA*GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVF 1282
            L A G  Q+ GID  +TFSPVVK +TIR +L++ +SR   +RQLDV NAFLHG L E+V+
Sbjct: 1001 LVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVY 1060

Query: 1283 MRHPKGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFIYKS 1462
            M+ P GFE    PD+VC L K LYGLKQAPRA + +    L + GF  S  DTS+F    
Sbjct: 1061 MQQPPGFESSSKPDYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNK 1120

Query: 1463 GSSMLLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLLL 1642
            G  ++ +L+YVDDII+  S+     + +  L+KE ++KDLGDLH+FLGIE T+ ++ ++L
Sbjct: 1121 GGILMFVLVYVDDIIVASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNGVIL 1180

Query: 1643 SQKKYVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTLT 1822
            +Q+KY   LL++ +M  C P +T ++   +++ + G  L   DAI YR +VG LQYLTLT
Sbjct: 1181 TQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDAIQYRSIVGALQYLTLT 1240

Query: 1823 RPDLCFVVNYVCQFMHIPT 1879
            RPD+ + VN VCQF+H PT
Sbjct: 1241 RPDIAYSVNKVCQFLHAPT 1259



 Score = 77.8 bits (190), Expect(2) = 3e-80
 Identities = 36/68 (52%), Positives = 46/68 (67%)
 Frame = +3

Query: 900  EPKNYXXXXXXXXXXXSMRTENNALRENDTWDLVPYVEGMNVLGSKWVYKIKYNSDGTIE 1079
            EP+N            +M TE NAL +NDTW LVPY +G N++G KWVYKIK  +DGT++
Sbjct: 936  EPQNDKEALGDKNWRDAMETEYNALIKNDTWHLVPYEKGQNIIGCKWVYKIKRKADGTLD 995

Query: 1080 RYKSRLGA 1103
            RYK+RL A
Sbjct: 996  RYKARLVA 1003



 Score =  147 bits (372), Expect = 1e-32
 Identities = 80/182 (43%), Positives = 108/182 (59%), Gaps = 3/182 (1%)
 Frame = +3

Query: 3    AVNENFLSTTILAFQC---GGAYELTKGQFKNFLDSTGIILRISCPHTQPQNGIAERKHS 173
            A+ E      I+A Q    GG Y+    +  +F    G+I+         QNG AERKH 
Sbjct: 566  ALVERMFDRKIIAMQTDWRGGRYQ----KLNSFFAQIGLIIMCHVLTLIRQNGSAERKHR 621

Query: 174  HETEVGKTLSFKACLPKKFWFVAFLTATFLINKTPAKVLNFRSSFEVLYNDLPDYSLLRV 353
            H  EVG +L   A +P KFW  AF+ AT+LIN+ P+K +   +  E L+N  PDYS LRV
Sbjct: 622  HIVEVGLSLLSYASMPLKFWDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYSSLRV 681

Query: 354  FGCSCYPNLIAY*HDKLSPKSSRCVFLGYNTLCKGYKCQDPLTKRTFVSRNVTFDETSFP 533
            FGC+C+P+L  Y   KL  +S +CVFLG++T  KG+KC D  + R ++SR+V FDE  FP
Sbjct: 682  FGCACWPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCLDVSSGRVYISRDVVFDENVFP 741

Query: 534  FS 539
            FS
Sbjct: 742  FS 743


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score =  247 bits (630), Expect(2) = 5e-79
 Identities = 124/259 (47%), Positives = 174/259 (67%)
 Frame = +2

Query: 1103 LAA*GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVF 1282
            L A G  Q+ GID  +TFSPVVK +TIR +L++ +SR   +RQLDV N FLHG L E+V+
Sbjct: 1004 LIAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNDFLHGFLEEEVY 1063

Query: 1283 MRHPKGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFIYKS 1462
            M+ P GFE    PD+VC L K LYGLKQAPRA + +    LT+ GF  S  DTS+F    
Sbjct: 1064 MQQPPGFESSSKPDYVCKLNKALYGLKQAPRAWYSRLSKKLTELGFEASKADTSLFFLNK 1123

Query: 1463 GSSMLLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLLL 1642
            G  ++ +L+YVDDII+  S+     + +  L+KE ++KDLGDLH+FLGIE T+ ++ ++L
Sbjct: 1124 GGIIMFVLVYVDDIIVASSTEKATTALLKDLNKEFTLKDLGDLHYFLGIEVTKVSNGVIL 1183

Query: 1643 SQKKYVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTLT 1822
            +Q+KY   +L++ +M  C P +T ++   +++ + G  L   DA  YR +VG LQYLTLT
Sbjct: 1184 TQEKYANDMLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLT 1243

Query: 1823 RPDLCFVVNYVCQFMHIPT 1879
            RPD+ + VN VCQF+H PT
Sbjct: 1244 RPDIAYSVNKVCQFLHAPT 1262



 Score = 77.0 bits (188), Expect(2) = 5e-79
 Identities = 34/66 (51%), Positives = 45/66 (68%)
 Frame = +3

Query: 900  EPKNYXXXXXXXXXXXSMRTENNALRENDTWDLVPYVEGMNVLGSKWVYKIKYNSDGTIE 1079
            EP+N            +M TE NAL +NDTW LVPY +G N++G KWVYK+K  +DGT++
Sbjct: 939  EPQNDKEALGDKNWRDAMETEYNALIKNDTWHLVPYEKGQNIIGCKWVYKVKRKADGTLD 998

Query: 1080 RYKSRL 1097
            RYK+RL
Sbjct: 999  RYKTRL 1004



 Score =  157 bits (396), Expect = 2e-35
 Identities = 83/181 (45%), Positives = 110/181 (60%), Gaps = 2/181 (1%)
 Frame = +3

Query: 3    AVNENFLSTTILAFQC--GGAYELTKGQFKNFLDSTGIILRISCPHTQPQNGIAERKHSH 176
            A+ E      I+A Q   GG Y+    +  +F    GI   +SCPHT  QNG AERKH H
Sbjct: 570  ALVERMFDRKIIAMQTDWGGEYQ----KLNSFFAQIGIDHHVSCPHTHQQNGSAERKHKH 625

Query: 177  ETEVGKTLSFKACLPKKFWFVAFLTATFLINKTPAKVLNFRSSFEVLYNDLPDYSLLRVF 356
              EVG +L   A +P KFW  AF+ AT+LIN+ P+K +   +  E L+N  PDYS LRVF
Sbjct: 626  IIEVGLSLLSYASMPLKFWDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYSSLRVF 685

Query: 357  GCSCYPNLIAY*HDKLSPKSSRCVFLGYNTLCKGYKCQDPLTKRTFVSRNVTFDETSFPF 536
             C+C+P+L  Y   KL  +S +CVFLG++T  KG+K  D  + R ++SR+V FDE  FPF
Sbjct: 686  SCTCWPHLHPYNTHKLQFRSKQCVFLGFSTHHKGFKFLDVSSGRVYISRDVVFDENVFPF 745

Query: 537  S 539
            S
Sbjct: 746  S 746


>ref|XP_004986808.1| PREDICTED: uncharacterized protein LOC101773259 [Setaria italica]
          Length = 1950

 Score =  271 bits (692), Expect(2) = 6e-79
 Identities = 141/254 (55%), Positives = 176/254 (69%)
 Frame = +2

Query: 1115 GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVFMRHP 1294
            G SQ+ G+D  ETFSPVVK +TIR VL++  SR  PI QLDV NAFLHG+L E V+ + P
Sbjct: 1502 GFSQREGVDYDETFSPVVKPATIRSVLSIAASRAWPIHQLDVKNAFLHGHLEETVYCQQP 1561

Query: 1295 KGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFIYKSGSSM 1474
             GF DP  PD+VC L+K LYGLKQAPRA +++F  F+ Q GFV S  DTS+FI + G+S+
Sbjct: 1562 PGFVDPGAPDYVCRLQKSLYGLKQAPRAWYQRFATFIGQLGFVTSASDTSLFILREGTSL 1621

Query: 1475 LLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLLLSQKK 1654
              +LLYVDDI+LT SS  LL   +  LS E +M DLG LH FLGI  TR++D L LSQ++
Sbjct: 1622 SYLLLYVDDIVLTASSSALLQRIMARLSSEFAMTDLGALHHFLGITVTRSSDGLFLSQRQ 1681

Query: 1655 YVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTLTRPDL 1834
            Y + LLQ+A M  C P TT V +  ++S   G +L++ DA  YR L G LQYLTLTRPDL
Sbjct: 1682 YAVELLQRAGMAECHPTTTPVDTHAKLSAADGDLLSEKDASEYRSLAGALQYLTLTRPDL 1741

Query: 1835 CFVVNYVCQFMHIP 1876
             + V  VC FMH P
Sbjct: 1742 AYAVQQVCLFMHAP 1755



 Score = 52.8 bits (125), Expect(2) = 6e-79
 Identities = 23/64 (35%), Positives = 37/64 (57%)
 Frame = +3

Query: 903  PKNYXXXXXXXXXXXSMRTENNALRENDTWDLVPYVEGMNVLGSKWVYKIKYNSDGTIER 1082
            P NY           +M  E  AL +N+TW LVP     NV+  KW+++ K+++DG++ R
Sbjct: 1434 PTNYRSALADANWRAAMMDEYQALVDNNTWQLVPRPPDANVVTGKWIFRHKFHADGSLAR 1493

Query: 1083 YKSR 1094
            +K+R
Sbjct: 1494 HKAR 1497


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  256 bits (655), Expect(2) = 4e-78
 Identities = 130/259 (50%), Positives = 174/259 (67%)
 Frame = +2

Query: 1103 LAA*GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVF 1282
            L A G  Q+ GID  +TFSPVVK +TIR VL++ +SR   +RQLDV NAFLHG L E+V+
Sbjct: 1003 LVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSIAVSRGWCMRQLDVQNAFLHGFLEEEVY 1062

Query: 1283 MRHPKGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFIYKS 1462
            M+ P G+ED   P +VC L K LYGLKQAPRA + +    L   GF  S  DTS+F Y  
Sbjct: 1063 MKQPPGYEDESFPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDLGFQGSKGDTSLFFYNK 1122

Query: 1463 GSSMLLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLLL 1642
            G  ++ +L+YVDDII+T S    + + +  L KE ++KDLGDLH+FLGIE  +  D ++L
Sbjct: 1123 GGLIIFVLIYVDDIIVTSSRQEAVSALLQDLKKEFALKDLGDLHYFLGIEVNKVTDEIIL 1182

Query: 1643 SQKKYVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTLT 1822
            +Q KY   LL++ +M  C P +T +++  ++S H G +L  +DA  YR +VG LQYLTLT
Sbjct: 1183 TQDKYACDLLRRVNMFDCKPVSTPLSTSEKLSAHEGDLLGPLDATNYRSVVGALQYLTLT 1242

Query: 1823 RPDLCFVVNYVCQFMHIPT 1879
            RPD+ F VN VCQF+H PT
Sbjct: 1243 RPDIAFPVNKVCQFLHAPT 1261



 Score = 64.3 bits (155), Expect(2) = 4e-78
 Identities = 32/68 (47%), Positives = 39/68 (57%)
 Frame = +3

Query: 900  EPKNYXXXXXXXXXXXSMRTENNALRENDTWDLVPYVEGMNVLGSKWVYKIKYNSDGTIE 1079
            EPKN            +M  E  AL  N TW LVP  +G NV+  KWVYKIK   DG+++
Sbjct: 938  EPKNLTDALQNTNWKKAMDIEYEALMNNKTWHLVPPKQGRNVIDCKWVYKIKRKQDGSLD 997

Query: 1080 RYKSRLGA 1103
            RYK+RL A
Sbjct: 998  RYKARLVA 1005



 Score =  180 bits (457), Expect = 2e-42
 Identities = 92/182 (50%), Positives = 117/182 (64%), Gaps = 2/182 (1%)
 Frame = +3

Query: 3    AVNENFLSTTILAFQC--GGAYELTKGQFKNFLDSTGIILRISCPHTQPQNGIAERKHSH 176
            A+ E   +  I+A Q   GG YE    +  +F    GI   +SCPHT  QNG AERKH H
Sbjct: 567  ALVERLFNRKIIAMQSDWGGEYE----KLHSFFTKIGITHHVSCPHTHQQNGSAERKHRH 622

Query: 177  ETEVGKTLSFKACLPKKFWFVAFLTATFLINKTPAKVLNFRSSFEVLYNDLPDYSLLRVF 356
              EVG TL   + +P KFW  AF  A +LIN+TP K+L F +  E L+N  PDYS LRVF
Sbjct: 623  IVEVGLTLLAYSSMPLKFWDEAFQAAVYLINRTPTKLLQFLTPLEHLFNQTPDYSSLRVF 682

Query: 357  GCSCYPNLIAY*HDKLSPKSSRCVFLGYNTLCKGYKCQDPLTKRTFVSRNVTFDETSFPF 536
            GC+C+P+L  Y   KL  +S +C FLGY+TL KG+KC DP T R ++SR+V FDET+FPF
Sbjct: 683  GCACWPHLRPYNTHKLQFRSKQCTFLGYSTLHKGFKCLDPSTGRVYISRDVIFDETNFPF 742

Query: 537  SK 542
            +K
Sbjct: 743  AK 744


>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 900

 Score =  254 bits (649), Expect(2) = 5e-78
 Identities = 130/259 (50%), Positives = 172/259 (66%)
 Frame = +2

Query: 1103 LAA*GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVF 1282
            L A G  Q+ GID  +TFSPVVK +TIR VL++ +S+   +RQLDV NAFLHG L E+V+
Sbjct: 448  LVAKGFKQRYGIDYEDTFSPVVKAATIRLVLSIAMSQGWSLRQLDVQNAFLHGYLDEEVY 507

Query: 1283 MRHPKGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFIYKS 1462
            MR P GFED   P F+C L K LYGLKQAPRA + +    L + GF  S  DTS+F Y  
Sbjct: 508  MRQPPGFEDARQPHFLCKLDKALYGLKQAPRAWYSRLSKKLQELGFSSSKADTSLFFYNK 567

Query: 1463 GSSMLLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLLL 1642
            G   + +L+YVDDII+  SS   +++ +  L K+ ++KDLGDLH+FLGIE  RT  TLLL
Sbjct: 568  GHHKMFVLVYVDDIIVASSSSPAVNALLKDLEKDFALKDLGDLHYFLGIEVKRTPQTLLL 627

Query: 1643 SQKKYVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTLT 1822
            SQ++Y   LL++ +M  C P +T +++  ++S   G  L   D   YR +VG LQYLTLT
Sbjct: 628  SQERYTTELLERVNMTSCKPVSTPLSTAEKLSVEIGDELGPSDVTQYRSIVGALQYLTLT 687

Query: 1823 RPDLCFVVNYVCQFMHIPT 1879
            RPD+ + VN VCQF+  PT
Sbjct: 688  RPDISYSVNKVCQFLQTPT 706



 Score = 66.2 bits (160), Expect(2) = 5e-78
 Identities = 33/68 (48%), Positives = 42/68 (61%)
 Frame = +3

Query: 900  EPKNYXXXXXXXXXXXSMRTENNALRENDTWDLVPYVEGMNVLGSKWVYKIKYNSDGTIE 1079
            EP +            +M  E +AL  N TW LVP V+G N++ SKWVYKIK  +DGTI+
Sbjct: 383  EPSSLQEALSSANWKQAMDKEFSALLHNKTWHLVPPVKGKNIIDSKWVYKIKKKADGTID 442

Query: 1080 RYKSRLGA 1103
            RYK+RL A
Sbjct: 443  RYKARLVA 450



 Score =  159 bits (403), Expect = 3e-36
 Identities = 78/164 (47%), Positives = 108/164 (65%)
 Frame = +3

Query: 51  GGAYELTKGQFKNFLDSTGIILRISCPHTQPQNGIAERKHSHETEVGKTLSFKACLPKKF 230
           GG Y+    +  +F    GI   +SCPH   QNG AERKH H  EVG +L   A +P KF
Sbjct: 18  GGEYQ----RLNSFFQRIGISHHVSCPHAHQQNGSAERKHRHIVEVGLSLLAHASMPLKF 73

Query: 231 WFVAFLTATFLINKTPAKVLNFRSSFEVLYNDLPDYSLLRVFGCSCYPNLIAY*HDKLSP 410
           W  AFLTAT+LIN+TP K++++ +    L+ + PDY+ LR FGC+C+PNL  Y   KL+ 
Sbjct: 74  WDEAFLTATYLINRTPMKIIHYDTP-AYLFEEQPDYNALRTFGCACWPNLRPYNTHKLAF 132

Query: 411 KSSRCVFLGYNTLCKGYKCQDPLTKRTFVSRNVTFDETSFPFSK 542
           +S +CVFLGY+ L KG+KC +  + R ++SR+V FDE  FPF++
Sbjct: 133 RSKQCVFLGYSPLHKGFKCLEVNSGRVYISRDVVFDENIFPFAQ 176


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  244 bits (624), Expect(2) = 2e-77
 Identities = 124/259 (47%), Positives = 173/259 (66%)
 Frame = +2

Query: 1103 LAA*GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVF 1282
            L A G  Q+ GID  +TFSPVVK +TIR +L++ +SR   +RQLDV NAFLHG L E+V+
Sbjct: 992  LVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVY 1051

Query: 1283 MRHPKGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFIYKS 1462
            M+ P GFE    P++VC L K LYGLKQAPRA + +    L + GF  S  DTS+F    
Sbjct: 1052 MQQPPGFESFSKPNYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNK 1111

Query: 1463 GSSMLLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLLL 1642
            G  ++ +L+YVDDII+  S+     + +  L+KE ++KDLGDLH+FLGIE T+  + ++L
Sbjct: 1112 GGIIMFVLVYVDDIIIASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVPNGIVL 1171

Query: 1643 SQKKYVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTLT 1822
            +Q+KY   LL++ +M  C P +T ++   +++ + G  L   DA  YR +VG LQYLTLT
Sbjct: 1172 TQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLT 1231

Query: 1823 RPDLCFVVNYVCQFMHIPT 1879
            RPD+ + VN VCQF+H PT
Sbjct: 1232 RPDIAYSVNKVCQFLHAPT 1250



 Score = 74.3 bits (181), Expect(2) = 2e-77
 Identities = 35/68 (51%), Positives = 45/68 (66%)
 Frame = +3

Query: 900  EPKNYXXXXXXXXXXXSMRTENNALRENDTWDLVPYVEGMNVLGSKWVYKIKYNSDGTIE 1079
            EP+N            +M  E +AL +NDTW LVPY +G NV+G KWVYKIK  +DGT++
Sbjct: 927  EPQNDKEALGDKNWKAAMEAEYDALIKNDTWHLVPYEKGQNVIGCKWVYKIKRKADGTLD 986

Query: 1080 RYKSRLGA 1103
            RYK+RL A
Sbjct: 987  RYKARLVA 994



 Score =  161 bits (407), Expect = 1e-36
 Identities = 84/181 (46%), Positives = 111/181 (61%), Gaps = 2/181 (1%)
 Frame = +3

Query: 3    AVNENFLSTTILAFQC--GGAYELTKGQFKNFLDSTGIILRISCPHTQPQNGIAERKHSH 176
            A+ E      I+A Q   GG Y+    +  +F    GI   +SCPHT  QNG AERKH H
Sbjct: 567  ALVERMFDRKIIAMQTDWGGEYQ----KLNSFFAKIGIDHHVSCPHTHQQNGSAERKHRH 622

Query: 177  ETEVGKTLSFKACLPKKFWFVAFLTATFLINKTPAKVLNFRSSFEVLYNDLPDYSLLRVF 356
              EVG +L   A +P KFW  AF+ AT+LIN+ P+K +   +  E L+N  PDY  LRVF
Sbjct: 623  IIEVGLSLLSYASMPLKFWDEAFVAATYLINRVPSKTIQNSTPLEKLFNQKPDYLSLRVF 682

Query: 357  GCSCYPNLIAY*HDKLSPKSSRCVFLGYNTLCKGYKCQDPLTKRTFVSRNVTFDETSFPF 536
            GC+C+P+L  Y   KL  +S +CVFLG++T  KG+KC D  + R ++SR+V FDE  FPF
Sbjct: 683  GCACWPHLRPYNTHKLQFRSKQCVFLGFSTHHKGFKCLDVSSGRVYISRDVVFDENIFPF 742

Query: 537  S 539
            S
Sbjct: 743  S 743


>emb|CAN83285.1| hypothetical protein VITISV_004139 [Vitis vinifera]
          Length = 1556

 Score =  262 bits (670), Expect(2) = 3e-77
 Identities = 138/259 (53%), Positives = 179/259 (69%)
 Frame = +2

Query: 1103 LAA*GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVF 1282
            + A G  Q  G+D  ETFSPV+K  TIR VLT+ L +  PIRQLDV NAFLHG ++ED+ 
Sbjct: 1069 VVAKGYHQVDGLDYTETFSPVIKPGTIRMVLTIALVKKWPIRQLDVKNAFLHGLISEDIH 1128

Query: 1283 MRHPKGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFIYKS 1462
            M  P G  D  HP  VC L+K LYGLKQAPRA F++F  FL ++GF  S+ D S+FI+ S
Sbjct: 1129 MEQPPGMADLEHPTHVCKLQKALYGLKQAPRAWFDRFSAFLLKYGFFCSLADPSLFIFHS 1188

Query: 1463 GSSMLLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLLL 1642
                L++LLYVDDI+LTGSS  L+ +FI LLS E +MKDLG +H+FLGIE ++TAD L L
Sbjct: 1189 NLGSLILLLYVDDILLTGSSTALVSTFIQLLSSEFAMKDLGQIHYFLGIEISQTADGLHL 1248

Query: 1643 SQKKYVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTLT 1822
            SQ  Y   +L++A+M+ C P +T + +  + +  + V+L D    ++R LVG LQYLTLT
Sbjct: 1249 SQSHYAFTILERANMVDCKPMSTPLEAKTK-TLPNSVLLEDPS--YFRGLVGALQYLTLT 1305

Query: 1823 RPDLCFVVNYVCQFMHIPT 1879
            RPDL + VNY  QFMH PT
Sbjct: 1306 RPDLSYSVNYASQFMHAPT 1324



 Score = 55.5 bits (132), Expect(2) = 3e-77
 Identities = 28/68 (41%), Positives = 37/68 (54%)
 Frame = +3

Query: 900  EPKNYXXXXXXXXXXXSMRTENNALRENDTWDLVPYVEGMNVLGSKWVYKIKYNSDGTIE 1079
            EP N            +M  E  AL  N TW LVP    M+V+GSKWV+K K   DG+++
Sbjct: 1004 EPHNIRDALAHPGWKAAMDEELQALHTNKTWVLVPRTSNMHVIGSKWVFKPKLKPDGSLD 1063

Query: 1080 RYKSRLGA 1103
            R K+R+ A
Sbjct: 1064 RLKARVVA 1071



 Score = 89.4 bits (220), Expect = 5e-15
 Identities = 51/138 (36%), Positives = 68/138 (49%)
 Frame = +3

Query: 6    VNENFLSTTILAFQCGGAYELTKGQFKNFLDSTGIILRISCPHTQPQNGIAERKHSHETE 185
            VN  F +  I  F   G  E    +  +   STGII ++SCP+T  Q    ER+H    E
Sbjct: 782  VNXQF-NKKIKVFHSDGGGEFINFKLSSHFLSTGIIHQVSCPYTPEQTXXVERRHXIIRE 840

Query: 186  VGKTLSFKACLPKKFWFVAFLTATFLINKTPAKVLNFRSSFEVLYNDLPDYSLLRVFGCS 365
            +G T+ F    P   W  AF TA +LIN  P+  LN  + +  L+   P+Y+ LRVFG  
Sbjct: 841  LGMTMLFHXGAPLFLWVXAFSTAVYLINXLPSSALNSETPYFALHGTHPBYTSLRVFGSK 900

Query: 366  CYPNLIAY*HDKLSPKSS 419
            C+P        K  PKSS
Sbjct: 901  CFPYTWDTRQHKFDPKSS 918



 Score = 68.2 bits (165), Expect = 1e-08
 Identities = 45/138 (32%), Positives = 70/138 (50%)
 Frame = +2

Query: 1211 RNCPIRQLDVSNAFLHGNLTEDVFMRHPKGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEK 1390
            R+  + Q+DV NAFLHG+  E+V+M+ P  F                +  ++ P     K
Sbjct: 102  RHWSLHQMDVQNAFLHGDFLEEVYMQLPPSF----------------HRQEETPM----K 141

Query: 1391 FGGFLTQHGFVRSVCDTSMFIYKSGSSMLLMLLYVDDIILTGSSLGLLHSFITLLSKELS 1570
            F   + Q GF +S  D S+F    G+S   +L+YVDDII+T +   ++ +    L  +  
Sbjct: 142  FYTTIQQDGFHQSRVDYSLFTKIFGNSFTDVLIYVDDIIITDNYENVIAALKKSLHTKFR 201

Query: 1571 MKDLGDLHFFLGIECTRT 1624
            +KDL  L +FL IE  R+
Sbjct: 202  IKDLVQLRYFLSIEIARS 219


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score =  259 bits (663), Expect(2) = 4e-77
 Identities = 129/259 (49%), Positives = 176/259 (67%)
 Frame = +2

Query: 1103 LAA*GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVF 1282
            L A G  Q+ GID  +TFSPVVK +TIR +L++ +SR   +RQLDV NAFLHG L E+V+
Sbjct: 812  LVAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWTLRQLDVQNAFLHGILEEEVY 871

Query: 1283 MRHPKGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFIYKS 1462
            M+ P G+ED +HPD+VC L K LYGLKQAPRA + K    L   GF  S  DTS+F Y  
Sbjct: 872  MKQPPGYEDKVHPDYVCKLDKALYGLKQAPRAWYAKLSQKLQHLGFQGSKADTSLFFYNK 931

Query: 1463 GSSMLLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLLL 1642
            G  ++ +L+YVDDII+  S    + + +  L K+ ++KDLGDLH+FLGIE  + +  ++L
Sbjct: 932  GGLIIFVLVYVDDIIVASSRQDAVPALLKDLQKDFALKDLGDLHYFLGIEVNKASSGIVL 991

Query: 1643 SQKKYVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTLT 1822
            +Q+KYV  LL++  M  C P +T +++  +++ H G +L   DA  YR +VG LQYLTLT
Sbjct: 992  TQEKYVTDLLRRVGMTDCKPVSTPLSTSEKLTLHEGDLLGPNDASNYRSVVGALQYLTLT 1051

Query: 1823 RPDLCFVVNYVCQFMHIPT 1879
            RPD+ F VN VCQF+H PT
Sbjct: 1052 RPDIYFPVNKVCQFLHAPT 1070



 Score = 58.2 bits (139), Expect(2) = 4e-77
 Identities = 28/68 (41%), Positives = 39/68 (57%)
 Frame = +3

Query: 900  EPKNYXXXXXXXXXXXSMRTENNALRENDTWDLVPYVEGMNVLGSKWVYKIKYNSDGTIE 1079
            EP++            +M  +  AL  N TW LVP  +G N++  KWVYKIK   DG+++
Sbjct: 747  EPRDLHDALHDTNWKHAMDAKFTALLHNKTWHLVPPQKGRNIIDYKWVYKIKRKQDGSLD 806

Query: 1080 RYKSRLGA 1103
            RYK+RL A
Sbjct: 807  RYKARLVA 814



 Score =  161 bits (408), Expect = 8e-37
 Identities = 80/179 (44%), Positives = 108/179 (60%), Gaps = 2/179 (1%)
 Frame = +3

Query: 12  ENFLSTTILAFQC--GGAYELTKGQFKNFLDSTGIILRISCPHTQPQNGIAERKHSHETE 185
           E   +  I++ Q   GG Y+    +   F +  GI   +SCPHT  QNG AERKH H  E
Sbjct: 399 ERMFNRKIISMQTDWGGEYQ----KLNTFFNKIGITHHVSCPHTHQQNGSAERKHRHIVE 454

Query: 186 VGKTLSFKACLPKKFWFVAFLTATFLINKTPAKVLNFRSSFEVLYNDLPDYSLLRVFGCS 365
           VG +L   A LP KFW  A+ +  +LIN+ P KVL + S  E L+   PDY  LR FGC+
Sbjct: 455 VGLSLLAHASLPLKFWDEAYQSGVYLINRMPTKVLGYSSPLECLFKQTPDYQALRTFGCA 514

Query: 366 CYPNLIAY*HDKLSPKSSRCVFLGYNTLCKGYKCQDPLTKRTFVSRNVTFDETSFPFSK 542
           C+P+L  Y   K+  +S RC FLGY+ L KG++C D  T R ++SR+V FDE+ FPF++
Sbjct: 515 CWPDLRPYNSHKMHFRSKRCTFLGYSPLHKGFRCLDSSTGRIYISRDVVFDESVFPFAE 573


>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
            gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
            Japonica Group]
          Length = 821

 Score =  256 bits (654), Expect(2) = 4e-77
 Identities = 130/259 (50%), Positives = 174/259 (67%)
 Frame = +2

Query: 1103 LAA*GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVF 1282
            L A G  Q+ GID  +TFSPVVK +TIR VL+L +SR   +RQLDV NAFLHG L E+V+
Sbjct: 371  LVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVY 430

Query: 1283 MRHPKGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFIYKS 1462
            M  P G+E    P++VC L K LYGLKQAPRA + +    L++ GFV S  DTS+F YK 
Sbjct: 431  MEQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKK 490

Query: 1463 GSSMLLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLLL 1642
            G   + +L+YVDDII+  S      + +  LSK+ ++KDLGDLH+FLGIE  +  D L+L
Sbjct: 491  GQVSIFLLIYVDDIIMASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLML 550

Query: 1643 SQKKYVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTLT 1822
            SQ+KY   LL++  M  C P +T +++  ++S + G +L   D+  YR +VG LQYLTLT
Sbjct: 551  SQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLT 610

Query: 1823 RPDLCFVVNYVCQFMHIPT 1879
            RPD+ F +N VCQF+H PT
Sbjct: 611  RPDISFSINKVCQFLHAPT 629



 Score = 61.6 bits (148), Expect(2) = 4e-77
 Identities = 31/71 (43%), Positives = 42/71 (59%)
 Frame = +3

Query: 891  SEVEPKNYXXXXXXXXXXXSMRTENNALRENDTWDLVPYVEGMNVLGSKWVYKIKYNSDG 1070
            S  EP++            +M  E  AL EN TW LVP  +G NV+  KWVYK+K  +DG
Sbjct: 303  SSGEPQSLEEAVNNKHWKEAMDAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADG 362

Query: 1071 TIERYKSRLGA 1103
            +++RYK+RL A
Sbjct: 363  SLDRYKARLVA 373



 Score =  125 bits (313), Expect = 9e-26
 Identities = 58/109 (53%), Positives = 79/109 (72%)
 Frame = +3

Query: 216 LPKKFWFVAFLTATFLINKTPAKVLNFRSSFEVLYNDLPDYSLLRVFGCSCYPNLIAY*H 395
           +P KFW  A L A +LIN+TP+KV+NF    E L+ + P+Y+ LR+FGC+ +PNL  Y  
Sbjct: 1   MPIKFWDEAVLAAAYLINRTPSKVINFACPLEQLFKEKPNYTALRIFGCAVWPNLRPYNK 60

Query: 396 DKLSPKSSRCVFLGYNTLCKGYKCQDPLTKRTFVSRNVTFDETSFPFSK 542
            KL+ +S RCVFLGY+ L KG+KC +  T R +VSR+VTFDE+ FPFS+
Sbjct: 61  HKLAFRSKRCVFLGYSNLHKGFKCLEIATGRVYVSRDVTFDESIFPFSE 109


>gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1480

 Score =  260 bits (665), Expect(2) = 5e-77
 Identities = 138/254 (54%), Positives = 172/254 (67%)
 Frame = +2

Query: 1115 GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVFMRHP 1294
            G SQQ GID  ETFSPVVK +TI  VL++  SR+ PI QLDV NAFLHGNL E V+ + P
Sbjct: 1034 GYSQQHGIDYDETFSPVVKPATIHVVLSIAASRSWPIHQLDVKNAFLHGNLEETVYYQQP 1093

Query: 1295 KGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFIYKSGSSM 1474
             GF DP  P+ VC L+K LYGLKQAPRA +++F  ++ Q GF  S  +TS+F+YK G ++
Sbjct: 1094 SGFVDPSAPNAVCLLQKSLYGLKQAPRAWYQRFATYIRQLGFTSSASNTSLFVYKDGDNI 1153

Query: 1475 LLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLLLSQKK 1654
              +LLYVDDIILT SS  LLH     L  E +M DLGDLHFFLGI  TR++D L LSQ++
Sbjct: 1154 AYLLLYVDDIILTASSATLLHHITARLHSEFAMTDLGDLHFFLGISVTRSSDGLFLSQRQ 1213

Query: 1655 YVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTLTRPDL 1834
            YV+ LL++A M  C    T V +  ++S   G  ++D     YR LVG LQYLTLTRP+L
Sbjct: 1214 YVVDLLKRAGMSECHSTATPVDARSKLSATDGAPVSDPTE--YRSLVGALQYLTLTRPEL 1271

Query: 1835 CFVVNYVCQFMHIP 1876
             + V  VC FMH P
Sbjct: 1272 AYAVQQVCLFMHDP 1285



 Score = 57.0 bits (136), Expect(2) = 5e-77
 Identities = 26/64 (40%), Positives = 37/64 (57%)
 Frame = +3

Query: 903  PKNYXXXXXXXXXXXSMRTENNALRENDTWDLVPYVEGMNVLGSKWVYKIKYNSDGTIER 1082
            P NY           +   E  AL +N+TW LVP   G NV+  KW++K K++SDGT+ R
Sbjct: 966  PSNYRSALADPNWRAATANEYKALVDNNTWRLVPRPPGANVVTGKWIFKHKFHSDGTLAR 1025

Query: 1083 YKSR 1094
            +K+R
Sbjct: 1026 HKAR 1029



 Score =  152 bits (384), Expect = 5e-34
 Identities = 76/172 (44%), Positives = 107/172 (62%)
 Frame = +3

Query: 24   STTILAFQCGGAYELTKGQFKNFLDSTGIILRISCPHTQPQNGIAERKHSHETEVGKTLS 203
            S  I  FQ     +       +F  S GI+LR+SCP+T PQNG AER      +  +TL 
Sbjct: 604  SLPIRCFQADNGTKFVNHATTSFFASRGIVLRLSCPYTSPQNGKAERVLRTINKSIRTLL 663

Query: 204  FKACLPKKFWFVAFLTATFLINKTPAKVLNFRSSFEVLYNDLPDYSLLRVFGCSCYPNLI 383
             +A +P  +W  A  TAT+L+N+ P+  +     +++L+N LPDYS L+VFGC CYPNL 
Sbjct: 664  IQASMPPSYWAEALATATYLLNRRPSTSVRNSIPYQLLHNKLPDYSNLQVFGCLCYPNLS 723

Query: 384  AY*HDKLSPKSSRCVFLGYNTLCKGYKCQDPLTKRTFVSRNVTFDETSFPFS 539
            A    KLSP+S+  VFLGY+   KG++C D  T+R ++SR+V FDE +FPF+
Sbjct: 724  AMTSHKLSPRSAPYVFLGYSASHKGFRCLDISTRRLYISRHVVFDEKTFPFA 775


>ref|NP_001174286.1| Os05g0235100 [Oryza sativa Japonica Group]
            gi|255676152|dbj|BAH93014.1| Os05g0235100, partial [Oryza
            sativa Japonica Group]
          Length = 841

 Score =  260 bits (665), Expect(2) = 5e-77
 Identities = 138/254 (54%), Positives = 172/254 (67%)
 Frame = +2

Query: 1115 GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVFMRHP 1294
            G SQQ GID  ETFSPVVK +TI  VL++  SR+ PI QLDV NAFLHGNL E V+ + P
Sbjct: 395  GYSQQHGIDYDETFSPVVKPATIHVVLSIAASRSWPIHQLDVKNAFLHGNLEETVYYQQP 454

Query: 1295 KGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFIYKSGSSM 1474
             GF DP  P+ VC L+K LYGLKQAPRA +++F  ++ Q GF  S  +TS+F+YK G ++
Sbjct: 455  SGFVDPSAPNAVCLLQKSLYGLKQAPRAWYQRFATYIRQLGFTSSASNTSLFVYKDGDNI 514

Query: 1475 LLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLLLSQKK 1654
              +LLYVDDIILT SS  LLH     L  E +M DLGDLHFFLGI  TR++D L LSQ++
Sbjct: 515  AYLLLYVDDIILTASSATLLHHITARLHSEFAMTDLGDLHFFLGISVTRSSDGLFLSQRQ 574

Query: 1655 YVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTLTRPDL 1834
            YV+ LL++A M  C    T V +  ++S   G  ++D     YR LVG LQYLTLTRP+L
Sbjct: 575  YVVDLLKRAGMSECHSTATPVDARSKLSATDGAPVSDPTE--YRSLVGALQYLTLTRPEL 632

Query: 1835 CFVVNYVCQFMHIP 1876
             + V  VC FMH P
Sbjct: 633  AYAVQQVCLFMHDP 646



 Score = 57.0 bits (136), Expect(2) = 5e-77
 Identities = 26/64 (40%), Positives = 37/64 (57%)
 Frame = +3

Query: 903  PKNYXXXXXXXXXXXSMRTENNALRENDTWDLVPYVEGMNVLGSKWVYKIKYNSDGTIER 1082
            P NY           +   E  AL +N+TW LVP   G NV+  KW++K K++SDGT+ R
Sbjct: 327  PSNYRSALADPNWRAATANEYKALVDNNTWRLVPRPPGANVVTGKWIFKHKFHSDGTLAR 386

Query: 1083 YKSR 1094
            +K+R
Sbjct: 387  HKAR 390



 Score =  129 bits (325), Expect = 4e-27
 Identities = 63/136 (46%), Positives = 90/136 (66%)
 Frame = +3

Query: 132 HTQPQNGIAERKHSHETEVGKTLSFKACLPKKFWFVAFLTATFLINKTPAKVLNFRSSFE 311
           +T PQNG AER      +  +TL  +A +P  +W  A  TAT+L+N+ P+  +     ++
Sbjct: 1   YTSPQNGKAERVLRTINKSIRTLLIQASMPPSYWAEALATATYLLNRRPSTSVRNSIPYQ 60

Query: 312 VLYNDLPDYSLLRVFGCSCYPNLIAY*HDKLSPKSSRCVFLGYNTLCKGYKCQDPLTKRT 491
           +L+N LPDYS L+VFGC CYPNL A    KLSP+S+  VFLGY+   KG++C D  T+R 
Sbjct: 61  LLHNKLPDYSNLQVFGCLCYPNLSAMTSHKLSPRSAPYVFLGYSASHKGFRCLDISTRRL 120

Query: 492 FVSRNVTFDETSFPFS 539
           ++SR+V FDE +FPF+
Sbjct: 121 YISRHVVFDEKTFPFA 136


>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
          Length = 1448

 Score =  240 bits (612), Expect(2) = 6e-77
 Identities = 122/259 (47%), Positives = 172/259 (66%)
 Frame = +2

Query: 1103 LAA*GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVF 1282
            L A G  Q+ GID  +TFSPVVK +TIR +L++ +SR   +RQLDV N FL G L E+V+
Sbjct: 1004 LIAKGFKQRYGIDYEDTFSPVVKAATIRIILSIAVSRGWNLRQLDVQNDFLRGFLEEEVY 1063

Query: 1283 MRHPKGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFIYKS 1462
            M+ P GFE     D+VC L K LYGLKQAPRA + +    LT+ GF  S  DTS+F    
Sbjct: 1064 MQQPPGFESSSKRDYVCKLNKALYGLKQAPRAWYSRLSKKLTELGFEASKADTSLFFLNK 1123

Query: 1463 GSSMLLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLLL 1642
            G  ++ +L+YVDDII+  S+     + +  L+KE ++KDLGDLH+FLGIE T+ ++ ++L
Sbjct: 1124 GGIIMFVLVYVDDIIVASSTEKATTALLKDLNKEFTLKDLGDLHYFLGIEVTKVSNGVIL 1183

Query: 1643 SQKKYVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTLT 1822
            +Q+KY   +L++ +M  C P +T ++   +++ + G  L   DA  YR +VG LQYLTLT
Sbjct: 1184 TQEKYANDMLKRVNMSNCTPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLT 1243

Query: 1823 RPDLCFVVNYVCQFMHIPT 1879
            RPD+ + VN VCQF+H PT
Sbjct: 1244 RPDIAYSVNKVCQFLHAPT 1262



 Score = 77.0 bits (188), Expect(2) = 6e-77
 Identities = 34/66 (51%), Positives = 45/66 (68%)
 Frame = +3

Query: 900  EPKNYXXXXXXXXXXXSMRTENNALRENDTWDLVPYVEGMNVLGSKWVYKIKYNSDGTIE 1079
            EP+N            +M TE NAL +NDTW LVPY +G N++G KWVYK+K  +DGT++
Sbjct: 939  EPQNDKEALGDKNWRDAMETEYNALIKNDTWHLVPYEKGQNIIGCKWVYKVKRKADGTLD 998

Query: 1080 RYKSRL 1097
            RYK+RL
Sbjct: 999  RYKTRL 1004



 Score =  157 bits (396), Expect = 2e-35
 Identities = 83/181 (45%), Positives = 110/181 (60%), Gaps = 2/181 (1%)
 Frame = +3

Query: 3    AVNENFLSTTILAFQC--GGAYELTKGQFKNFLDSTGIILRISCPHTQPQNGIAERKHSH 176
            A+ E      I+A Q   GG Y+    +  +F    GI   +SCPHT  QNG AERKH H
Sbjct: 570  ALVERMFDRKIIAMQTDWGGEYQ----KLNSFFAQIGIDHHVSCPHTHQQNGSAERKHKH 625

Query: 177  ETEVGKTLSFKACLPKKFWFVAFLTATFLINKTPAKVLNFRSSFEVLYNDLPDYSLLRVF 356
              EVG +L   A +P KFW  AF+ AT+LIN+ P+K +   +  E L+N  PDYS LRVF
Sbjct: 626  IIEVGLSLLSYASMPLKFWDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYSSLRVF 685

Query: 357  GCSCYPNLIAY*HDKLSPKSSRCVFLGYNTLCKGYKCQDPLTKRTFVSRNVTFDETSFPF 536
             C+C+P+L  Y   KL  +S +CVFLG++T  KG+K  D  + R ++SR+V FDE  FPF
Sbjct: 686  SCTCWPHLHPYNTHKLQFRSKQCVFLGFSTHHKGFKFLDVSSGRVYISRDVVFDENVFPF 745

Query: 537  S 539
            S
Sbjct: 746  S 746


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  256 bits (655), Expect(2) = 6e-77
 Identities = 130/259 (50%), Positives = 175/259 (67%)
 Frame = +2

Query: 1103 LAA*GCSQQAGIDCFETFSPVVKISTIRCVLTLDLSRNCPIRQLDVSNAFLHGNLTEDVF 1282
            L A G  Q+ GID  +TFSPVVK +TIR VL+L +SR   +RQLDV NAFLHG L E+V+
Sbjct: 949  LVAKGFKQRYGIDYEDTFSPVVKAATIRIVLSLAVSRGWSLRQLDVKNAFLHGVLEEEVY 1008

Query: 1283 MRHPKGFEDPIHPDFVCHLKKVLYGLKQAPRA*FEKFGGFLTQHGFVRSVCDTSMFIYKS 1462
            M+ P G+E    P++VC L K LYGLKQAPRA + +    L++ GFV S  DTS+F YK 
Sbjct: 1009 MKQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKK 1068

Query: 1463 GSSMLLMLLYVDDIILTGSSLGLLHSFITLLSKELSMKDLGDLHFFLGIECTRTADTLLL 1642
            G   + +L+YVDDII+  S      + +  LSK+ ++KDLGDLH+FLGIE  +  D L+L
Sbjct: 1069 GQVSIFLLIYVDDIIVASSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLML 1128

Query: 1643 SQKKYVLHLLQKADMLLCGPATTRVTSGPRVSFHHGVVLADVDAIFYRKLVGGLQYLTLT 1822
            SQ+KY   LL++  M  C P +T +++  ++S + G +L   D+  YR +VG LQYLTLT
Sbjct: 1129 SQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLT 1188

Query: 1823 RPDLCFVVNYVCQFMHIPT 1879
            RPD+ F +N VCQF+H PT
Sbjct: 1189 RPDISFSINKVCQFLHAPT 1207



 Score = 60.5 bits (145), Expect(2) = 6e-77
 Identities = 28/52 (53%), Positives = 37/52 (71%)
 Frame = +3

Query: 948  SMRTENNALRENDTWDLVPYVEGMNVLGSKWVYKIKYNSDGTIERYKSRLGA 1103
            +M  E  AL EN TW LVP  +G NV+  KWVYK+K  +DG+++RYK+RL A
Sbjct: 900  AMDAEYMALIENKTWHLVPPQKGRNVIDCKWVYKVKRKADGSLDRYKARLVA 951



 Score =  166 bits (420), Expect = 3e-38
 Identities = 87/179 (48%), Positives = 112/179 (62%), Gaps = 2/179 (1%)
 Frame = +3

Query: 12   ENFLSTTILAFQC--GGAYELTKGQFKNFLDSTGIILRISCPHTQPQNGIAERKHSHETE 185
            E F    ILA Q   GG Y+    +   F    GI   +SCP+   QNG AERKH H  E
Sbjct: 532  ERFFGHKILAVQTDWGGEYQ----KLNTFFAKIGISHHVSCPYAHQQNGSAERKHRHLIE 587

Query: 186  VGKTLSFKACLPKKFWFVAFLTATFLINKTPAKVLNFRSSFEVLYNDLPDYSLLRVFGCS 365
            V  TL   A +P KFW  A L A +LIN+TP+KV+NF    E L+ + P+Y+ LR+FGC+
Sbjct: 588  VALTLLAHASMPIKFWDEAVLAAAYLINRTPSKVINFACPLEQLFKEKPNYTALRIFGCA 647

Query: 366  CYPNLIAY*HDKLSPKSSRCVFLGYNTLCKGYKCQDPLTKRTFVSRNVTFDETSFPFSK 542
             +PNL  Y   KL+ +S RCVFLGY+ L KG+KC +  T R +VSR+VTFDE+ FPFS+
Sbjct: 648  VWPNLRPYNKHKLAFRSKRCVFLGYSNLHKGFKCLEIATGRVYVSRDVTFDESIFPFSE 706