BLASTX nr result
ID: Papaver27_contig00014582
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver27_contig00014582
(2143 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007220718.1| hypothetical protein PRUPE_ppa022673mg [Prun... 312 4e-82
gb|ABC94893.1| polyprotein [Oryza australiensis] 295 6e-77
emb|CAN69982.1| hypothetical protein VITISV_027150 [Vitis vinifera] 289 3e-75
ref|XP_007044250.1| DNA/RNA polymerases superfamily protein [The... 289 4e-75
prf||1510387A retrotransposon del1-46 285 6e-74
emb|CAH67121.1| H0502G05.12 [Oryza sativa Indica Group] 284 1e-73
gb|AAM93447.1| putative polyprotein [Oryza sativa Japonica Group... 283 2e-73
gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexic... 283 2e-73
emb|CAE02385.2| OSJNBb0080H08.11 [Oryza sativa Japonica Group] 283 3e-73
gb|ABG65986.1| retrotransposon protein, putative, Ty3-gypsy subc... 282 4e-73
gb|AAV31367.1| putative polyprotein [Oryza sativa Japonica Group] 282 4e-73
gb|AAT73656.1| unknown protein, similar to polyprotein [Oryza sa... 282 4e-73
gb|ABF95997.1| retrotransposon protein, putative, Ty3-gypsy subc... 282 5e-73
gb|AAT85792.1| reverse transcriptase (RNA-dependent DNA polymera... 282 5e-73
gb|ABF95991.1| retrotransposon protein, putative, Ty3-gypsy subc... 281 8e-73
gb|AAK13122.1|AC080019_14 Polyprotein [Oryza sativa Japonica Group] 281 1e-72
gb|ABB47441.1| retrotransposon protein, putative, Ty3-gypsy subc... 281 1e-72
gb|AAX96590.1| retrotransposon protein, putative, Ty3-gypsy sub-... 281 1e-72
gb|AAX95202.1| retrotransposon protein, putative, Ty3-gypsy sub-... 281 1e-72
emb|CAE05306.2| OSJNBa0056L23.4 [Oryza sativa Japonica Group] 281 1e-72
>ref|XP_007220718.1| hypothetical protein PRUPE_ppa022673mg [Prunus persica]
gi|462417180|gb|EMJ21917.1| hypothetical protein
PRUPE_ppa022673mg [Prunus persica]
Length = 1506
Score = 312 bits (799), Expect = 4e-82
Identities = 210/604 (34%), Positives = 307/604 (50%), Gaps = 38/604 (6%)
Frame = +3
Query: 444 VNIATFKLQGAARDWWESAELTESEPR------FTELFFQEFVSDVSRDRKRSEFVNIEQ 605
V +AT+ L AR WW+S + +P F F ++ ++ K EF+ +EQ
Sbjct: 131 VTLATYFLIKHARHWWDSVKRRYRDPLAITWQVFIAAFDSQYYPQAYQNLKMQEFLQLEQ 190
Query: 606 GQMSLAEFSNKYRSLARYVPEVASNDEVKDRRFIRALKPEISKQLAGFQVKTFQEALSRG 785
G M++ E+ K+ L++Y + ++ K + F LK I + ++ F + +
Sbjct: 191 GMMTVLEYEKKFHDLSKYCLPLVEDESKKCQLFTMGLKASIRDIVISQRLTNFGDVVMS- 249
Query: 786 FSXXXXXXXXXXXXXXXLKRVPKQLP-VRQDPAKR---LMTSMPGQTF--FRPSEQPWKM 947
+ L+R ++ Q +KR S G+++ +RP +
Sbjct: 250 -ASLIESSQMMARPRGELRRQQFEIGGPSQGSSKRGSYSSGSSSGRSYGGYRPG---FSS 305
Query: 948 GSASRPPSSSYTQPSVTRPDTLRTQG-QTFRPQGRFVRLQQVR----PTGSINLGHPTCF 1112
S SSS + V T R G Q GR R Q R +G G C+
Sbjct: 306 SGGSNQSSSSGNRSGV---GTARGAGRQLLSGSGRRSRPQCARCGRYHSGPCQQGTTGCY 362
Query: 1113 YCKESGYMKKDCPVLQG----------GTSSSQQGMVYSVTQEGTPTETV----SQEGEM 1250
YC + G+ +KDCP+ GT+SS G SV G+ + S+
Sbjct: 363 YCGQPGHFQKDCPLFPQTRETTDAPTPGTASSSGGAQTSVASHGSSQQRGRGGRSRATGR 422
Query: 1251 MYAVL*GDGSATNQVVEGNISLFYHLVHVLFDTGSTHSFIKSDIVDELELDVTDVGKRLS 1430
+Y + + A+ +V+ G + +F VL D G+THSF+ + ++ + L+
Sbjct: 423 VYNMSQQEAHASPEVITGILPVFGIPARVLIDPGATHSFVTPSFAHNANVRLSALQTELA 482
Query: 1431 LTSPLGGRTFPFQVCKSCVMIVDTQEMIADLVVLDMHGFDVILGMDWLSKYHASVDCYTK 1610
++ P G V + ++V ADL+ L M DVILGMDWL+++ ASVDC+ K
Sbjct: 483 ISVPTGEIFRVGTVYRDSTVLVGNVFFEADLIPLGMVDLDVILGMDWLARHRASVDCFRK 542
Query: 1611 TVHFHMPGKPPFTFVGV--VKPQ-----SWCQKLKGTGSLNGVGLLACVLDKSTSIETIP 1769
V F PG+P TF G V P ++L G + + D +E IP
Sbjct: 543 EVVFRSPGRPEVTFYGKRRVLPSYLISAMTAKRLLRKGCSGYIAHVIDTRDNELRLEDIP 602
Query: 1770 VVRDYGYVFPEVLPSLPPKRDIDFSIELLPGTSPISVSPYRMAPLEMKELKTQIKELIRL 1949
VV+D+ VFPE LP LPP R+I+F IEL PGT+ IS +PYRMAP E++ELKTQ++EL+
Sbjct: 603 VVQDFSDVFPEDLPGLPPHREIEFVIELAPGTNLISQAPYRMAPAELRELKTQLQELVDK 662
Query: 1950 GFTRPSFSPWGAPVLFVKKKDRSFRLCVDYKKLNKVTIKNNYPLPRIDDLFDQLKGSLYF 2129
GF RPSFSPWGA VLFVKKKD + RLC+DY++LNK+T++N YPLPRIDDLFDQLKG+ F
Sbjct: 663 GFIRPSFSPWGALVLFVKKKDGTMRLCIDYRQLNKITVQNRYPLPRIDDLFDQLKGAKVF 722
Query: 2130 SKTD 2141
SK D
Sbjct: 723 SKID 726
>gb|ABC94893.1| polyprotein [Oryza australiensis]
Length = 1469
Score = 295 bits (755), Expect = 6e-77
Identities = 208/594 (35%), Positives = 294/594 (49%), Gaps = 26/594 (4%)
Frame = +3
Query: 438 DWVNIATFKLQGAARDWWESAELTESEP-------RFTELFFQEFVSDVSRDRKRSEFVN 596
D V AT +L+G A DWW++ + T +E FT F + FV K++EF
Sbjct: 88 DRVVFATNQLEGPASDWWDTYKETRAEDAGEPTWEEFTAAFRENFVPAAVMRMKKNEFRR 147
Query: 597 IEQGQMSLAEFSNKYRSLARYVPEVASNDEVKDRRFIRALKPEISKQLAGFQVKTFQEAL 776
+ QG S+ E+ NK+ LARY +++E K +FI L E+ + G +FQ +
Sbjct: 148 LRQGNTSVQEYLNKFTQLARYATSDLADEEEKIDKFIEGLNDELRGPMIGQDHTSFQSLI 207
Query: 777 SRGFSXXXXXXXXXXXXXXXLKRVPKQLPVRQDPAKRLMTSMPGQ-TFFRP---SEQPWK 944
++ ++ Q V + +RL + P Q T RP + WK
Sbjct: 208 NK-----------------VVRLEHDQKVVDNNRKRRLAMARPFQGTPQRPKGATPSGWK 250
Query: 945 --MGSASRPPSSSYTQPSVTRPDTLRTQGQTFRPQGRFVRLQQVRPTGSINLGHPTCFYC 1118
+ + RP +S + S T LRT T GR + +CF C
Sbjct: 251 PNVPATGRPLASDHVNRSAT--PQLRTPTPTLAAPGR---------------RNVSCFNC 293
Query: 1119 KESGYMKKDCP------VLQGGTSSSQQGMVYSVTQEGT-----PTETVS--QEGEMMYA 1259
E G+ CP V G + +G G P E + + G++ +
Sbjct: 294 GEFGHYSNSCPKPRNTPVRTGANVTPVRGTPTPAAGRGLFRTPLPNEAATGFRRGQVNH- 352
Query: 1260 VL*GDGSATNQVVEGNISLFYHLVHVLFDTGSTHSFIKSDIVDELELDVTDVGKRLSLTS 1439
V + V+ G S+ LV VLFD+G++HSFI S + + L + + + + S
Sbjct: 353 VRAEEAQEDQSVLMGMFSINSTLVKVLFDSGASHSFISSQVSKQHHLHQVALKRPMLVHS 412
Query: 1440 PLGGRTFPFQVCKSCVMIVDTQEMIADLVVLDMHGFDVILGMDWLSKYHASVDCYTKTVH 1619
P G T P + I D +++L+VL DVILGMDWL+K + +DC + V
Sbjct: 413 PGGDITVPHACINVPIRIRDVV-FLSNLMVLSPQTIDVILGMDWLTKNNGIIDCSRREVT 471
Query: 1620 FHMPGKPPFTFVGVVKPQSWCQKLKGTGSLNGVGLLACVLDKSTSIETIPVVRDYGYVFP 1799
P P + P+ C++ G ++ +G +PVV++Y VFP
Sbjct: 472 VSTPWGSPMSITMDQNPKL-CEQAAGVFTMLPLG-------------GMPVVQEYPDVFP 517
Query: 1800 EVLPSLPPKRDIDFSIELLPGTSPISVSPYRMAPLEMKELKTQIKELIRLGFTRPSFSPW 1979
E LP +PP RDI+F I+L+PGT+PIS PYRM E++ELK QI+EL GF RPS SPW
Sbjct: 518 EELPGMPPDRDIEFIIDLMPGTAPISKRPYRMPANELEELKKQIRELQEKGFVRPSSSPW 577
Query: 1980 GAPVLFVKKKDRSFRLCVDYKKLNKVTIKNNYPLPRIDDLFDQLKGSLYFSKTD 2141
GAPVLFVKKKD S R+CVDY+ LN+VTIKN YPLPRIDDLFDQLKG+ FSK D
Sbjct: 578 GAPVLFVKKKDGSMRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLKGAQVFSKID 631
>emb|CAN69982.1| hypothetical protein VITISV_027150 [Vitis vinifera]
Length = 1495
Score = 289 bits (740), Expect = 3e-75
Identities = 157/293 (53%), Positives = 197/293 (67%), Gaps = 10/293 (3%)
Frame = +3
Query: 1293 VVEGNISLFYHLVHVLFDTGSTHSFIKSDIVDELELDVTDVGKRLSLTSPLGGRTFPFQV 1472
+VEG I ++ V VLFDTG+THSFI + + L L V L + SP+G + ++
Sbjct: 433 LVEGMILVYSTWVRVLFDTGATHSFISASCANALGLKSERVENLLLIESPMGTNSRVDRI 492
Query: 1473 CKSCVMIVDTQEMIADLVVLDMHGFDVILGMDWLSKYHASVDCYTKTVHFHMPGKPPFTF 1652
CK CV+ + + + DL +LDM G+DVILGMDWL+ Y A +DC+ + + F +P F
Sbjct: 493 CKGCVITLADRALNVDLRILDMTGYDVILGMDWLAVYRAVIDCHRRRIIFCLPEGFEVCF 552
Query: 1653 VG---VVKPQSWC----QKLKGTGSLNGVGLLACVLDKSTS---IETIPVVRDYGYVFPE 1802
VG V P S Q + GS+N LAC+ K + I IPVVR + VFP+
Sbjct: 553 VGGKCVSLPFSQSDPCYQYVLRKGSIN---FLACLRGKEKAQKDITEIPVVRKFQDVFPD 609
Query: 1803 VLPSLPPKRDIDFSIELLPGTSPISVSPYRMAPLEMKELKTQIKELIRLGFTRPSFSPWG 1982
LP LPP R+ DFSIE+ PGT PISVSPYRMAPLE+KELKTQ+ EL+ GF RPS SPWG
Sbjct: 610 ELPGLPPHREFDFSIEVYPGTDPISVSPYRMAPLELKELKTQLDELLGRGFIRPSTSPWG 669
Query: 1983 APVLFVKKKDRSFRLCVDYKKLNKVTIKNNYPLPRIDDLFDQLKGSLYFSKTD 2141
APVLFVKKKD + RLC+DY+KLN+VT+KN YPLPRIDDLFDQLKG+ YFSK D
Sbjct: 670 APVLFVKKKDGTLRLCIDYRKLNRVTVKNKYPLPRIDDLFDQLKGAKYFSKID 722
Score = 65.5 bits (158), Expect(2) = 4e-09
Identities = 35/118 (29%), Positives = 65/118 (55%), Gaps = 5/118 (4%)
Frame = +3
Query: 444 VNIATFKLQGAARDWWESAE-LTESE----PRFTELFFQEFVSDVSRDRKRSEFVNIEQG 608
V +AT+ L A WWES + + ++E F +F ++ +V++ KR EF ++ QG
Sbjct: 159 VGLATYMLVDKADFWWESMKRVYDTEVMTWEEFERIFLGKYFGEVAKHAKRMEFEHLIQG 218
Query: 609 QMSLAEFSNKYRSLARYVPEVASNDEVKDRRFIRALKPEISKQLAGFQVKTFQEALSR 782
MS+ E+ +++ L+R+ + S + K RRF + L+P I +L ++ + E + R
Sbjct: 219 TMSVLEYESRFSELSRFALGMISEEGEKARRFQQGLRPAIRNRLVPLAIRDYSELVKR 276
Score = 24.6 bits (52), Expect(2) = 4e-09
Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 4/103 (3%)
Frame = +1
Query: 97 LNVGGNNTSDKETDIKRMEDISKRMGEFNAEIRDICERHGWHGVE----TRTDPPVAPVA 264
L + G + + +E + + + E E+R+ E G T+ + +
Sbjct: 40 LEMAGRTRGGRSERNEELETVREELREVRRELRETVELMRGQGSRRAGGTQGHEGIPGHS 99
Query: 265 HQSNVVQNSGHDHDNDLLTRFLKLAPNEFSGVAQDPDVAENWV 393
H+ + + + + RF+ + P F+G + AE+W+
Sbjct: 100 HRRSRTERPVMSQ-MEAMKRFMVMQPPSFNGEPSAAEAAEHWL 141
>ref|XP_007044250.1| DNA/RNA polymerases superfamily protein [Theobroma cacao]
gi|508708185|gb|EOY00082.1| DNA/RNA polymerases
superfamily protein [Theobroma cacao]
Length = 1515
Score = 289 bits (739), Expect = 4e-75
Identities = 190/599 (31%), Positives = 304/599 (50%), Gaps = 40/599 (6%)
Frame = +3
Query: 465 LQGAARDWWESAELTESEPRFTELFFQEFVSDV----SRDRKRSEFVNIEQGQMSLAEFS 632
++ AR WW S + + P+ F +EF + K+ EF++++QG +++ E+
Sbjct: 82 IEKRARTWWNSVKSRFATPQTWSDFLREFDGQYFTYFHQKEKKREFLSLKQGNLTVEEYE 141
Query: 633 NKYRSLARYVPEVASNDEVKDRRFIRALKPEISKQLAGFQVKTFQEALSRGFSXXXXXXX 812
++ L YVP++ +++ + F L+ EI +++ + +E +
Sbjct: 142 TRFNELMLYVPDLVKSEQDQASYFEEGLRNEIRERMTVNGREPHKEVVQMALRAEKLAIE 201
Query: 813 XXXXXXXXLKRVPKQLPVRQDPAKRLMTSMPGQTFFRPSEQPWKMGSASRPP-SSSYTQP 989
KR + Q + +++ G T P RPP S +P
Sbjct: 202 NRRIRIEFAKRRNPGMSSSQPVKRGKDSAISGSTTSVSVTSP-------RPPFPPSQQRP 254
Query: 990 SVTRPDTLRTQGQTFRPQGRFVRLQQVRPTGSINLG---HPT-CFYCKESGYMKKDCPVL 1157
S + G++F R R G+ + G PT CF C ++G+++ +CP L
Sbjct: 255 SRFSRSDMTGSGKSFGGSDR------CRNCGNYHSGLCREPTRCFQCGQTGHIRSNCPRL 308
Query: 1158 QGGT---SSS----------------QQGM-----VYSVTQEGTPTETVSQEGEMMYAVL 1265
T SSS +QG+ V S T P+ ++ ++AV
Sbjct: 309 GRATVVASSSPARTDIQRRDSSGLPPRQGVAIPSGVESNTPAHPPSRPQTRTSTRVFAVT 368
Query: 1266 *GDGSATNQVVEGNISLFYHLVHVLFDTGSTHSFIKSDIVDELELDVTDVGKRLSLTSPL 1445
+ V G +SLF +VL D+GS S++ + V ++ +++ + + + + +PL
Sbjct: 369 EDEAQVRPGAVTGTMSLFDKDAYVLIDSGSDRSYVSTTFVSIVDRNLSPLEEEIVIHTPL 428
Query: 1446 GGRTFPFQVCKSCVMIVDTQEMIADLVVLDMHGFDVILGMDWLSKYHASVDCYTKTVHFH 1625
G + + C + V +E DL+ L++ FD+ILGMDWL+ + A+VDC+ K +
Sbjct: 429 GEKLVRNSCYRDCGVRVGEEEFRGDLIPLEILDFDLILGMDWLTAHRANVDCFRKEIVLR 488
Query: 1626 MPGKPPFTFVGV--VKPQSWCQKLKGTGSLNG--VGLLACVLDKSTS---IETIPVVRDY 1784
FVG V P +K + + LA V+D S +E + +V ++
Sbjct: 489 NSEGAEIVFVGKRRVLPSCVISAIKASKLVQKGYSTYLAYVIDTSKGEPKLEDVSIVSEF 548
Query: 1785 GYVFPEVLPSLPPKRDIDFSIELLPGTSPISVSPYRMAPLEMKELKTQIKELIRLGFTRP 1964
VFP+ LP LPP R+++F I+LLPGT+PIS+ PYRMAP E+KELK Q++EL+ GF RP
Sbjct: 549 PDVFPDDLPGLPPDRELEFPIDLLPGTAPISIPPYRMAPTELKELKVQLQELVDKGFIRP 608
Query: 1965 SFSPWGAPVLFVKKKDRSFRLCVDYKKLNKVTIKNNYPLPRIDDLFDQLKGSLYFSKTD 2141
S SPWGAP+LFVKKKD + RLC+D ++LN++TIKN YPLPRIDDLFDQL+G+ FSK D
Sbjct: 609 SISPWGAPILFVKKKDGTLRLCIDCRQLNRMTIKNKYPLPRIDDLFDQLQGATVFSKVD 667
>prf||1510387A retrotransposon del1-46
Length = 1443
Score = 285 bits (729), Expect = 6e-74
Identities = 146/295 (49%), Positives = 199/295 (67%)
Frame = +3
Query: 1257 AVL*GDGSATNQVVEGNISLFYHLVHVLFDTGSTHSFIKSDIVDELELDVTDVGKRLSLT 1436
A++ D + ++ +S+F L HVL DTGSTHSFI I+ LE+ V +G LS+
Sbjct: 322 ALIAQDPGVSGTMIRSILSIFSSLCHVLIDTGSTHSFITPRIIKMLEIPVQPLGYILSVI 381
Query: 1437 SPLGGRTFPFQVCKSCVMIVDTQEMIADLVVLDMHGFDVILGMDWLSKYHASVDCYTKTV 1616
SP+G TF QVCK C++ + QE+ DL++LD+ D++LGMDWL+ YH +DC++K V
Sbjct: 382 SPIGTSTFVNQVCKGCMITIGNQELTVDLIILDLEDPDILLGMDWLAAYHVVLDCFSKKV 441
Query: 1617 HFHMPGKPPFTFVGVVKPQSWCQKLKGTGSLNGVGLLACVLDKSTSIETIPVVRDYGYVF 1796
FH+PG P F F G + ++ +L+ + LA ++ + S + +VR+Y VF
Sbjct: 442 TFHLPGIPEFHFHGETQ-HTFFPTFTHQPNLSYLASLASEINITPSTDLSLIVREYINVF 500
Query: 1797 PEVLPSLPPKRDIDFSIELLPGTSPISVSPYRMAPLEMKELKTQIKELIRLGFTRPSFSP 1976
P+ LP LPP R+I+F I LLPGTSPIS++PY MAP E++ELK Q+++L+ GF R S SP
Sbjct: 501 PDDLPGLPPPREIEFQINLLPGTSPISITPYHMAPSELQELKEQLEDLLNKGFIRGSTSP 560
Query: 1977 WGAPVLFVKKKDRSFRLCVDYKKLNKVTIKNNYPLPRIDDLFDQLKGSLYFSKTD 2141
WGA VLF KKD S R+C+DY KLN VT+KN YPLPRIDDLFDQL G+ YFSK D
Sbjct: 561 WGAHVLFDPKKDDSKRMCIDY-KLNSVTVKNKYPLPRIDDLFDQLNGA-YFSKID 613
Score = 73.9 bits (180), Expect = 3e-10
Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 7/140 (5%)
Frame = +3
Query: 393 RNAECILKRVGGTTFDWVNIATFKLQGAARDWWESAELTESEP-------RFTELFFQEF 551
R+ IL +G T V +A+F+LQG A WW++ + + F E+F ++F
Sbjct: 82 RHVTKILDTLGVTDEQKVILASFQLQGEAEFWWDAKVRSREDDTTQIKWDEFVEVFTEKF 141
Query: 552 VSDVSRDRKRSEFVNIEQGQMSLAEFSNKYRSLARYVPEVASNDEVKDRRFIRALKPEIS 731
D RD F+ + QG +++A++ K+ L+RY P + K +RF + LK I+
Sbjct: 142 FPDTVRD-DLERFMTLVQGSLTVAQYEAKFEELSRYAPYQVDINIRKVKRFEQGLKLSIT 200
Query: 732 KQLAGFQVKTFQEALSRGFS 791
KQL+ +K ++E ++R S
Sbjct: 201 KQLSSHLIKDYREVITRALS 220
>emb|CAH67121.1| H0502G05.12 [Oryza sativa Indica Group]
Length = 1877
Score = 284 bits (726), Expect = 1e-73
Identities = 192/587 (32%), Positives = 278/587 (47%), Gaps = 24/587 (4%)
Frame = +3
Query: 453 ATFKLQGAARDWWESAELTESEP------RFTELFFQEFVSDVSRDRKRSEFVNIEQGQM 614
A+ +L+G A DWWE+ EP F F V + + D K+ EF ++QG
Sbjct: 489 ASHQLRGPAADWWENYCNAHPEPTNIAWDEFATAFRAAHVPESTIDMKKEEFNRLKQGNS 548
Query: 615 SLAEFSNKYRSLARYVPEVASNDEVKDRRFIRALKPEISKQLAGFQVKTFQEALSRGFSX 794
S+ E+ +++ LARY PE D+ K R+F++ + + QL TFQ +++
Sbjct: 549 SINEYLSQFNKLARYAPEEVDTDKKKIRKFLKGIAVGMRLQLLAHDFPTFQHMINKAL-- 606
Query: 795 XXXXXXXXXXXXXXLKRVPKQLPVRQDPAKRLMTSMPGQTFFRPSEQPWKMGSASRPPSS 974
+ K+ Q + R P + +P + + A+R P
Sbjct: 607 -----LLEDARKEATEEYKKRKSNHQGNSSR---GAPRPRYGQPMQYHQSVTQANRQPGY 658
Query: 975 SYTQPSVTRPDTLRTQGQTFRPQGRFVRLQQVRPTGSINLGHPTCFYCKESGYMKKDCPV 1154
+ +P + RP Q Q P G CF C + G+ + CP
Sbjct: 659 A-PRPQINRP---APQPQQRAPSGNTAPNSVTSFKSPQGPSAVQCFRCNQMGHYARQCPQ 714
Query: 1155 LQGGTSSSQQGMVYSVTQEGTPTETVSQEGEMMYAVL*GDGSATN--------------- 1289
T+S + + TPT +Q A G ++ N
Sbjct: 715 NPPNTNSGHA----NGSTARTPTPAATQSRPSSQASGQGSRASNNFGRGRVNHIQAETAQ 770
Query: 1290 ---QVVEGNISLFYHLVHVLFDTGSTHSFIKSDIVDELELDVTDVGKRLSLTSPLGGRTF 1460
VV G S+ VLFD+G++HSFI V ++ + + SP G
Sbjct: 771 DAPDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSP-GRNIR 829
Query: 1461 PFQVCKSCVMIVDTQEMIADLVVLDMHGFDVILGMDWLSKYHASVDCYTKTVHFHMPGKP 1640
Q+C + ++ + +A +VLD D+ILGMDWL+K+ +DC KT+ PG
Sbjct: 830 ATQICPEVNLRIEEVDFLAKPIVLDSQSLDIILGMDWLAKHKGQIDCAEKTITLQGPGGK 889
Query: 1641 PFTFVGVVKPQSWCQKLKGTGSLNGVGLLACVLDKSTSIETIPVVRDYGYVFPEVLPSLP 1820
F S +L C+ + TS+E++P+V +Y VFPE L S+P
Sbjct: 890 QVRFTPNTPTVSR-------------SILTCL--QVTSLESVPIVCEYPDVFPEELTSMP 934
Query: 1821 PKRDIDFSIELLPGTSPISVSPYRMAPLEMKELKTQIKELIRLGFTRPSFSPWGAPVLFV 2000
P R+I+F+IEL PGT+PI+ PYRMA E+ E+K QI+EL G+ RPS SPWGAPVL V
Sbjct: 935 PDREIEFAIELAPGTAPIAKRPYRMAANELAEIKRQIEELESKGYVRPSSSPWGAPVLLV 994
Query: 2001 KKKDRSFRLCVDYKKLNKVTIKNNYPLPRIDDLFDQLKGSLYFSKTD 2141
KKKD S R+ +DY+ LN+VTIKN YPLPRIDDLFDQLKG+ FSK D
Sbjct: 995 KKKDGSERMVIDYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKID 1041
>gb|AAM93447.1| putative polyprotein [Oryza sativa Japonica Group]
gi|78708018|gb|ABB46993.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1499
Score = 283 bits (725), Expect = 2e-73
Identities = 195/583 (33%), Positives = 289/583 (49%), Gaps = 17/583 (2%)
Frame = +3
Query: 444 VNIATFKLQGAARDWWESAELTESE------PRFTELFFQEFVSDVSRDRKRSEFVNIEQ 605
V A +LQG A WW+ + T+ E RFT F + V K+ EF ++Q
Sbjct: 117 VIFAAHQLQGPASLWWDHFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKKEFRELKQ 176
Query: 606 GQMSLAEFSNKYRSLARYVPEVASNDEVKDRRFIRALKPEISKQLAGFQVKTFQEALSRG 785
G S+ E+ +++ +LARY PE DE K +F+ + PE+S +L FQ + +
Sbjct: 177 GNRSVMEYLHEFNNLARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKS 236
Query: 786 FSXXXXXXXXXXXXXXXLKRVPKQLPVRQDPAKRLMTSMPGQTFFRPSEQPWKMGSASRP 965
L+ K+L + + R + P+ GS+S+
Sbjct: 237 IR---------------LEAKHKELELHKRRLANFRNQQGANQRVRYTN-PYPGGSSSQQ 280
Query: 966 PSSSYTQPS--------VTRPDTLRTQGQTFRPQGRFVRLQQVRPTGSINLGHPTCFYCK 1121
+P+ V +P + Q T P+ +Q V+ + CF C
Sbjct: 281 QQQQQPRPAPRPQFVVRVPQPQQQQNQQGTRAPRPPTPTVQPVQGRRDASGPQRLCFNCF 340
Query: 1122 ESGYMKKDCPVLQGGTSSSQQGMVYSVTQEGTPTETVSQEGEMMYAVL*GDGSATNQVVE 1301
E G+ CP QQG + G + VS+ G + + D T V+
Sbjct: 341 EPGHFADKCP-----KPRRQQGQAPPRSNNGG--KDVSR-GRVNHVTA-EDVLTTPDVIV 391
Query: 1302 GNISLFYHLVHVLFDTGSTHSFIKSDIVDELELDVTDVGKRLSLTSPLGGRTFPFQVCKS 1481
G + +LFD+G++HSFI V + +L V + L +T+P G T + S
Sbjct: 392 GTFLVHSIPATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYY---S 448
Query: 1482 CVMIVDTQEMI--ADLVVLDMHGFDVILGMDWLSKYHASVDCYTKTVHFHM-PGKPPFTF 1652
+ ++ Q + +DL++LD DVILGM+WL+++ VDC +TV + P +P F
Sbjct: 449 PAVPIEIQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPEQPVVVF 508
Query: 1653 VGVVKPQSWCQKLKGTGSLNGVGLLACVLDKSTSIETIPVVRDYGYVFPEVLPSLPPKRD 1832
+S L+ +GL IP+VR++G VFPE LP +PPKR+
Sbjct: 509 APPTSVRS--------SELHQIGL-----------SEIPIVREFGDVFPEELPGMPPKRE 549
Query: 1833 IDFSIELLPGTSPISVSPYRMAPLEMKELKTQIKELIRLGFTRPSFSPWGAPVLFVKKKD 2012
I+F I+L PGT+P+ PYRMA E+ E+K Q++EL G+ RPS SPWGAPV+FV+KKD
Sbjct: 550 IEFRIDLAPGTTPLHKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKD 609
Query: 2013 RSFRLCVDYKKLNKVTIKNNYPLPRIDDLFDQLKGSLYFSKTD 2141
++ R+CVDY+ LN+VTIKN YPLPRIDDLFDQLKG+ FSK D
Sbjct: 610 KTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKID 652
>gb|AEJ07934.1| Xilon1 gag-pol polyprotein [Zea mays subsp. mexicana]
Length = 1604
Score = 283 bits (724), Expect = 2e-73
Identities = 192/589 (32%), Positives = 285/589 (48%), Gaps = 30/589 (5%)
Frame = +3
Query: 465 LQGAARDWWESAELTESEP------RFTELFFQEFVSDVSRDRKRSEFVNIEQGQMSLAE 626
L+GAA+ WWES T + P F F Q V K+ EF+ ++QG S++E
Sbjct: 209 LRGAAQSWWESYLATHANPDTITWEEFRGSFRQYHVPAGLMTLKKEEFLALKQGSSSVSE 268
Query: 627 FSNKYRSLARYVPEVASNDEVKDRRFIRALKPEISKQLAGFQVKTFQEALSRGFSXXXXX 806
+ +++ L+RY PE + D + RF+R L + QL TFQ + R
Sbjct: 269 YRDRFLQLSRYAPEDVNTDAKRQYRFLRGLVDPLQYQLMNHTFPTFQHLIDRAIMT---- 324
Query: 807 XXXXXXXXXXLKRVPKQLPVRQDPAKRLMTSMPGQTFFRP---SEQPWKMGSASRPPSS- 974
+R K++ +D +++ PG + RP QP + RPP
Sbjct: 325 -----------ERKRKEM---EDRKRKISGPQPGSSS-RPRFSGNQPQQFRQNQRPPQQH 369
Query: 975 ----SYTQPSVTRPDTLRTQGQTFRPQGRFVRLQQVRP------------TGSINLGHPT 1106
Y Q P Q+ + G+F + Q P +G+
Sbjct: 370 QQRQQYQQFQRQYPQHQYQNRQSNQSGGQFQKQNQQAPRLPAPTNQQNSQAAPAQVGNRA 429
Query: 1107 CFYCKESGYMKKDCPVLQGGTSSSQQGMV-YSVTQEGTPTETVSQEGEMMYAVL*GDG-S 1280
CF+C E G+ CP S +V+Q G + L +
Sbjct: 430 CFHCGEQGHWVMQCPKKAAQQQSGPNAPAKQNVSQPGAGNRPQPRYNHGRLNHLEAEAVQ 489
Query: 1281 ATNQVVEGNISLFYHLVHVLFDTGSTHSFIKSDIVDELELDVTDVGKRLSLTSPLGGRTF 1460
T ++ G + H+ VLFDTG+THSFI + V+ L +T + + + S GGR
Sbjct: 490 ETPDMIVGTFPVDSHIAEVLFDTGATHSFITASWVEAHNLPITTMSTPIQIDSA-GGRIR 548
Query: 1461 PFQVCKSCVMIVDTQEMIADLVVLDMHGFDVILGMDWLSKYHASVDCYTKTVHFHMP-GK 1637
+C + + + A+L+V+ G DVILGM+WL KY A + C +T+ P G+
Sbjct: 549 ADSICLNVSVEIRGIAFPANLIVMGTQGIDVILGMNWLDKYQAVISCDKRTIKLVSPLGE 608
Query: 1638 PPFTFVGVVKPQSW-CQKLKGTGSLNGVGLLACVLDKSTSIETIPVVRDYGYVFPEVLPS 1814
T + +P+ C ++ S ++ IE+I VV ++ VFP+ LP
Sbjct: 609 EVVTELVPPEPKKGSCYQMAVDSS------------EADPIESIKVVSEFPDVFPKDLPG 656
Query: 1815 LPPKRDIDFSIELLPGTSPISVSPYRMAPLEMKELKTQIKELIRLGFTRPSFSPWGAPVL 1994
+PP+R ++F+IELLPGT+PIS YR++ E+ ELK QI EL G+ RPS SPW AP L
Sbjct: 657 MPPERKVEFAIELLPGTAPISKRAYRISGPELVELKKQIDELSEKGYIRPSTSPWAAPAL 716
Query: 1995 FVKKKDRSFRLCVDYKKLNKVTIKNNYPLPRIDDLFDQLKGSLYFSKTD 2141
FV+KKD + R+C+DY+ LN+VTIKN YPLPRI+DLFDQL+G+ FSK D
Sbjct: 717 FVEKKDGTKRMCIDYRALNEVTIKNKYPLPRIEDLFDQLRGASVFSKID 765
>emb|CAE02385.2| OSJNBb0080H08.11 [Oryza sativa Japonica Group]
Length = 1809
Score = 283 bits (723), Expect = 3e-73
Identities = 193/574 (33%), Positives = 279/574 (48%), Gaps = 8/574 (1%)
Frame = +3
Query: 444 VNIATFKLQGAARDWWESAELTESE------PRFTELFFQEFVSDVSRDRKRSEFVNIEQ 605
V A +LQG A WW+ + T+ E RFT F + V K+ EF ++Q
Sbjct: 439 VIFAAHQLQGPASLWWDHFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQ 498
Query: 606 GQMSLAEFSNKYRSLARYVPEVASNDEVKDRRFIRALKPEISKQLAGFQVKTFQEALSRG 785
G S+ E+ +++ +LARY PE DE K +F+ + PE+S +L FQ + +
Sbjct: 499 GNRSVMEYLHEFNNLARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKS 558
Query: 786 FSXXXXXXXXXXXXXXXLKRVPKQLPVRQDPAKRLMTSMPGQTFFRPSEQPWKMGSASRP 965
L Q Q R PG + + +Q + SA RP
Sbjct: 559 IRLEDKHKELESHKRR-LANFRNQQGANQ--RVRYTNPYPGGSSSQQEQQQQQPRSAPRP 615
Query: 966 PSSSYTQPSVTRPDTLRTQGQTFRPQGRFVRLQQVRPTGSINLGHPTCFYCKESGYMKKD 1145
V +P ++Q T P+ +Q + CF C E G+
Sbjct: 616 QFVV----RVPQPQQQQSQQGTRAPRPPMPTVQPGQSRRDAQGPQRLCFNCFEPGHFADK 671
Query: 1146 CPVLQGGTSSSQQGMVYSVTQEGTPTETVSQEGEMMYAVL*GDGSATNQVVEGNISLFYH 1325
CP L+ QQG + G + + D T V+ G +
Sbjct: 672 CPKLR-----RQQGQAPPRSNNGGKDVIRGRVNHVTAE----DVLTTPDVIVGTFLIHSI 722
Query: 1326 LVHVLFDTGSTHSFIKSDIVDELELDVTDVGKRLSLTSPLGGRTFPFQVCKSCVMIVDTQ 1505
+LFD+G++HSFI V +L V + L +T+P G T + S + ++ Q
Sbjct: 723 PATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYY---SPAVPIEIQ 779
Query: 1506 EMI--ADLVVLDMHGFDVILGMDWLSKYHASVDCYTKTVHFHMPGKPPFTFVGVVKPQSW 1679
+ +DL++LD DVILGM+WL+++ VDC +TV + + P F S
Sbjct: 780 GIPFPSDLILLDTKSLDVILGMNWLAQFQGVVDCARRTVTLYPGPEQPVVFFAPPTSVS- 838
Query: 1680 CQKLKGTGSLNGVGLLACVLDKSTSIETIPVVRDYGYVFPEVLPSLPPKRDIDFSIELLP 1859
+ L+ +GL IP+VR++G VFPE LP +PPKR+I+F I+L P
Sbjct: 839 ------SSELHQIGL-----------SEIPIVREFGDVFPEELPGMPPKREIEFRIDLAP 881
Query: 1860 GTSPISVSPYRMAPLEMKELKTQIKELIRLGFTRPSFSPWGAPVLFVKKKDRSFRLCVDY 2039
GT+P+ PYRMA E+ E+K Q++EL G+ RPS SPWGAPV+FV+KKD++ R+CVDY
Sbjct: 882 GTTPLYKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDY 941
Query: 2040 KKLNKVTIKNNYPLPRIDDLFDQLKGSLYFSKTD 2141
+ LN+VTIKN YPLPRIDDLFDQLKG+ FSK D
Sbjct: 942 RALNEVTIKNKYPLPRIDDLFDQLKGATVFSKID 975
>gb|ABG65986.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1840
Score = 282 bits (722), Expect = 4e-73
Identities = 194/574 (33%), Positives = 279/574 (48%), Gaps = 8/574 (1%)
Frame = +3
Query: 444 VNIATFKLQGAARDWWESAELTESE------PRFTELFFQEFVSDVSRDRKRSEFVNIEQ 605
V A +LQG A WW+ + T+ E RFT F + V K+ EF ++Q
Sbjct: 457 VIFAAHQLQGPASLWWDHFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQ 516
Query: 606 GQMSLAEFSNKYRSLARYVPEVASNDEVKDRRFIRALKPEISKQLAGFQVKTFQEALSRG 785
G S+ E+ +++ +LARY PE DE K +F+ + PE+S +L FQ + +
Sbjct: 517 GNRSVMEYLHEFNNLARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKS 576
Query: 786 FSXXXXXXXXXXXXXXXLKRVPKQLPVRQDPAKRLMTSMPGQTFFRPSEQPWKMGSASRP 965
L Q Q R PG + + +Q + SA RP
Sbjct: 577 IRLEAKHKELESHKRR-LANFRNQQGANQ--RVRYTNPYPGGSSSQQQQQQQQSRSAPRP 633
Query: 966 PSSSYTQPSVTRPDTLRTQGQTFRPQGRFVRLQQVRPTGSINLGHPTCFYCKESGYMKKD 1145
V +P + Q T P+ +Q V+ CF C E G+
Sbjct: 634 QFVV----RVPQPQQQQNQQGTRAPRPPTPAVQPVQGRRDAQGQQRLCFNCFEPGHFADK 689
Query: 1146 CPVLQGGTSSSQQGMVYSVTQEGTPTETVSQEGEMMYAVL*GDGSATNQVVEGNISLFYH 1325
CP QQG + G + + D T V+ G +
Sbjct: 690 CP-----KPRRQQGQAPPRSNNGGKDVIRGRVNHVTAE----DELTTPDVIVGTFLVHSI 740
Query: 1326 LVHVLFDTGSTHSFIKSDIVDELELDVTDVGKRLSLTSPLGGRTFPFQVCKSCVMIVDTQ 1505
+LFD+G++HSFI V + +L V + L +T+P G T + S + ++ Q
Sbjct: 741 PATILFDSGASHSFISVPFVGKNQLGVERLRNPLLITTPGGVMTAKYY---SPAVPIEIQ 797
Query: 1506 EMI--ADLVVLDMHGFDVILGMDWLSKYHASVDCYTKTVHFHMPGKPPFTFVGVVKPQSW 1679
+ +DL++LD DVILGM+WL+++ VDC +TV + + P F P S
Sbjct: 798 GIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPEQPVVFFA--PPTS- 854
Query: 1680 CQKLKGTGSLNGVGLLACVLDKSTSIETIPVVRDYGYVFPEVLPSLPPKRDIDFSIELLP 1859
+ L+ +GL IP+VR++G VFPE LP +PPKR+I+F I+L P
Sbjct: 855 ----VRSSELHQIGL-----------SEIPIVREFGDVFPEELPGMPPKREIEFRIDLAP 899
Query: 1860 GTSPISVSPYRMAPLEMKELKTQIKELIRLGFTRPSFSPWGAPVLFVKKKDRSFRLCVDY 2039
GT+P+ PYRMA E+ E+K Q++EL G+ RPS SPWGAPV+FV+KKD++ R+CVDY
Sbjct: 900 GTTPLHKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDY 959
Query: 2040 KKLNKVTIKNNYPLPRIDDLFDQLKGSLYFSKTD 2141
+ LN+VTIKN YPLPRIDDLFDQLKG+ FSK D
Sbjct: 960 RALNEVTIKNKYPLPRIDDLFDQLKGATVFSKID 993
>gb|AAV31367.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1611
Score = 282 bits (722), Expect = 4e-73
Identities = 190/568 (33%), Positives = 281/568 (49%), Gaps = 8/568 (1%)
Frame = +3
Query: 462 KLQGAARDWWESAELTESE------PRFTELFFQEFVSDVSRDRKRSEFVNIEQGQMSLA 623
+LQG A WW+ + T+ E RFT F++ V K+ EF ++QG S+
Sbjct: 372 QLQGPASLWWDHFQATQPEGQPTTWARFTAAFWRTHVPAGVMALKKREFRELKQGNCSVM 431
Query: 624 EFSNKYRSLARYVPEVASNDEVKDRRFIRALKPEISKQLAGFQVKTFQEALSRGFSXXXX 803
E+ +++ +LARY PE DE K +F+ + PE+S +L FQ + +
Sbjct: 432 EYLHEFNNLARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQHLVDKSI----- 486
Query: 804 XXXXXXXXXXXLKRVPKQLPVRQDPAKRLMTSMPGQTFFRPSEQPWKMGSASRPPSSSYT 983
R+ + R+ +RL Q + +Q + SA RP
Sbjct: 487 -------------RLEAKHKERESHKRRLANFRNQQGANQRQQQQQQPRSAPRPQFVV-- 531
Query: 984 QPSVTRPDTLRTQGQTFRPQGRFVRLQQVRPTGSINLGHPTCFYCKESGYMKKDCPVLQG 1163
V +P ++Q T P+ +Q + + CF C E G+ CP
Sbjct: 532 --RVPQPQQQQSQQGTRAPRPPTPAVQPSQGRRDVQGQQRLCFNCFEPGHFADKCP---- 585
Query: 1164 GTSSSQQGMVYSVTQEGTPTETVSQEGEMMYAVL*GDGSATNQVVEGNISLFYHLVHVLF 1343
QQG + G + + D T V+ G + +LF
Sbjct: 586 -KPRRQQGQAPPHSNNGGKDVIRGRVNHVTAE----DVLTTPDVIVGTFLIHSIPATILF 640
Query: 1344 DTGSTHSFIKSDIVDELELDVTDVGKRLSLTSPLGGRTFPFQVCKSCVMIVDTQEMI--A 1517
D+G++HSFI V +L V + L +T+P G T + S V+ ++ Q + +
Sbjct: 641 DSGASHSFIYVPFVGRNQLGVERLRNPLLITTPGGVMTAKYY---SPVVPIEIQGIPFPS 697
Query: 1518 DLVVLDMHGFDVILGMDWLSKYHASVDCYTKTVHFHMPGKPPFTFVGVVKPQSWCQKLKG 1697
DL++LD DVILGM+WL+++ VDC +TV + + P F P S G
Sbjct: 698 DLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPEQPVVFFA--PPTS-----VG 750
Query: 1698 TGSLNGVGLLACVLDKSTSIETIPVVRDYGYVFPEVLPSLPPKRDIDFSIELLPGTSPIS 1877
+ L+ +GL IP+VR +G VFPE LP +PPKR+I+F I+L PGT+P
Sbjct: 751 SSELHQIGL-----------SEIPIVRGFGDVFPEELPGMPPKREIEFRIDLAPGTTPQY 799
Query: 1878 VSPYRMAPLEMKELKTQIKELIRLGFTRPSFSPWGAPVLFVKKKDRSFRLCVDYKKLNKV 2057
PYRMA E+ ++K Q++EL G+ RPS SPWGAPV+FV+KKD++ R+C+DY+ LN+V
Sbjct: 800 KRPYRMAANELAKVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCIDYRALNEV 859
Query: 2058 TIKNNYPLPRIDDLFDQLKGSLYFSKTD 2141
TIKN YPLPRIDDLFDQLKG++ FSK D
Sbjct: 860 TIKNKYPLPRIDDLFDQLKGAIVFSKID 887
>gb|AAT73656.1| unknown protein, similar to polyprotein [Oryza sativa Japonica Group]
Length = 917
Score = 282 bits (722), Expect = 4e-73
Identities = 190/568 (33%), Positives = 281/568 (49%), Gaps = 8/568 (1%)
Frame = +3
Query: 462 KLQGAARDWWESAELTESE------PRFTELFFQEFVSDVSRDRKRSEFVNIEQGQMSLA 623
+LQG A WW+ + T+ E RFT F++ V K+ EF ++QG S+
Sbjct: 372 QLQGPASLWWDHFQATQPEGQPTTWARFTAAFWRTHVPAGVMALKKREFRELKQGNCSVM 431
Query: 624 EFSNKYRSLARYVPEVASNDEVKDRRFIRALKPEISKQLAGFQVKTFQEALSRGFSXXXX 803
E+ +++ +LARY PE DE K +F+ + PE+S +L FQ + +
Sbjct: 432 EYLHEFNNLARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQHLVDKSI----- 486
Query: 804 XXXXXXXXXXXLKRVPKQLPVRQDPAKRLMTSMPGQTFFRPSEQPWKMGSASRPPSSSYT 983
R+ + R+ +RL Q + +Q + SA RP
Sbjct: 487 -------------RLEAKHKERESHKRRLANFRNQQGANQRQQQQQQPRSAPRPQFVV-- 531
Query: 984 QPSVTRPDTLRTQGQTFRPQGRFVRLQQVRPTGSINLGHPTCFYCKESGYMKKDCPVLQG 1163
V +P ++Q T P+ +Q + + CF C E G+ CP
Sbjct: 532 --RVPQPQQQQSQQGTRAPRPPTPAVQPSQGRRDVQGQQRLCFNCFEPGHFADKCP---- 585
Query: 1164 GTSSSQQGMVYSVTQEGTPTETVSQEGEMMYAVL*GDGSATNQVVEGNISLFYHLVHVLF 1343
QQG + G + + D T V+ G + +LF
Sbjct: 586 -KPRRQQGQAPPHSNNGGKDVIRGRVNHVTAE----DVLTTPDVIVGTFLIHSIPATILF 640
Query: 1344 DTGSTHSFIKSDIVDELELDVTDVGKRLSLTSPLGGRTFPFQVCKSCVMIVDTQEMI--A 1517
D+G++HSFI V +L V + L +T+P G T + S V+ ++ Q + +
Sbjct: 641 DSGASHSFIYVPFVGRNQLGVERLRNPLLITTPGGVMTAKYY---SPVVPIEIQGIPFPS 697
Query: 1518 DLVVLDMHGFDVILGMDWLSKYHASVDCYTKTVHFHMPGKPPFTFVGVVKPQSWCQKLKG 1697
DL++LD DVILGM+WL+++ VDC +TV + + P F P S G
Sbjct: 698 DLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPEQPVVFFA--PPTS-----VG 750
Query: 1698 TGSLNGVGLLACVLDKSTSIETIPVVRDYGYVFPEVLPSLPPKRDIDFSIELLPGTSPIS 1877
+ L+ +GL IP+VR +G VFPE LP +PPKR+I+F I+L PGT+P
Sbjct: 751 SSELHQIGL-----------SEIPIVRGFGDVFPEELPGMPPKREIEFRIDLAPGTTPQY 799
Query: 1878 VSPYRMAPLEMKELKTQIKELIRLGFTRPSFSPWGAPVLFVKKKDRSFRLCVDYKKLNKV 2057
PYRMA E+ ++K Q++EL G+ RPS SPWGAPV+FV+KKD++ R+C+DY+ LN+V
Sbjct: 800 KRPYRMAANELAKVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCIDYRALNEV 859
Query: 2058 TIKNNYPLPRIDDLFDQLKGSLYFSKTD 2141
TIKN YPLPRIDDLFDQLKG++ FSK D
Sbjct: 860 TIKNKYPLPRIDDLFDQLKGAIVFSKID 887
>gb|ABF95997.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1764
Score = 282 bits (721), Expect = 5e-73
Identities = 194/574 (33%), Positives = 279/574 (48%), Gaps = 8/574 (1%)
Frame = +3
Query: 444 VNIATFKLQGAARDWWESAELTESE------PRFTELFFQEFVSDVSRDRKRSEFVNIEQ 605
V A +LQG A WW+ + T+ E RFT F + V K+ EF ++Q
Sbjct: 381 VIFAAHQLQGPASLWWDHFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQ 440
Query: 606 GQMSLAEFSNKYRSLARYVPEVASNDEVKDRRFIRALKPEISKQLAGFQVKTFQEALSRG 785
G S+ E+ +++ +LARY PE DE K +F+ + PE+S +L + FQ + +
Sbjct: 441 GNRSVMEYLHEFNNLARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYQDFQRLVDKS 500
Query: 786 FSXXXXXXXXXXXXXXXLKRVPKQLPVRQDPAKRLMTSMPGQTFFRPSEQPWKMGSASRP 965
L Q Q R PG + + +Q + SA RP
Sbjct: 501 IRLEAKHKELESHKRR-LANFRNQQGANQ--RVRYTNPYPGGSSSQQQQQQQQSRSAPRP 557
Query: 966 PSSSYTQPSVTRPDTLRTQGQTFRPQGRFVRLQQVRPTGSINLGHPTCFYCKESGYMKKD 1145
V +P + Q T P+ +Q V+ CF C E G+
Sbjct: 558 QFVV----RVPQPQQQQNQQGTRAPRPPTPTVQPVQGRRDAQGQQRLCFNCFEPGHFADK 613
Query: 1146 CPVLQGGTSSSQQGMVYSVTQEGTPTETVSQEGEMMYAVL*GDGSATNQVVEGNISLFYH 1325
CP QQG + G + + D T V+ G +
Sbjct: 614 CP-----KPRRQQGQAPPRSNNGGKDVIRGRVNHVTAE----DVLTTPDVIVGTFLIHSI 664
Query: 1326 LVHVLFDTGSTHSFIKSDIVDELELDVTDVGKRLSLTSPLGGRTFPFQVCKSCVMIVDTQ 1505
+LFD+G++HSFI V + +L V + L +T+P G T + S + ++ Q
Sbjct: 665 PATILFDSGASHSFISVPFVGKSQLGVERLRNPLLITTPGGVMTAKYY---SPAVPIEIQ 721
Query: 1506 EM--IADLVVLDMHGFDVILGMDWLSKYHASVDCYTKTVHFHMPGKPPFTFVGVVKPQSW 1679
+ +DL++LD DVILGM+WL+++ VDC +TV + + P F P S
Sbjct: 722 GIPFSSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPEQPVVFFA--PPTS- 778
Query: 1680 CQKLKGTGSLNGVGLLACVLDKSTSIETIPVVRDYGYVFPEVLPSLPPKRDIDFSIELLP 1859
+ L+ +GL IP+VR++G VFPE LP +PPKR+I+F I+L P
Sbjct: 779 ----VRSSELHQIGL-----------SEIPIVREFGDVFPEELPGMPPKREIEFRIDLAP 823
Query: 1860 GTSPISVSPYRMAPLEMKELKTQIKELIRLGFTRPSFSPWGAPVLFVKKKDRSFRLCVDY 2039
GT+P+ PYRMA E+ E+K Q++EL G+ RPS SPWGAPV FV+KKD++ R+CVDY
Sbjct: 824 GTTPLHKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPWGAPVNFVEKKDKTKRMCVDY 883
Query: 2040 KKLNKVTIKNNYPLPRIDDLFDQLKGSLYFSKTD 2141
+ LN+VTIKN YPLPRIDDLFDQLKG+ FSK D
Sbjct: 884 RALNEVTIKNKYPLPRIDDLFDQLKGATVFSKID 917
>gb|AAT85792.1| reverse transcriptase (RNA-dependent DNA polymerase) family protein
[Oryza sativa Japonica Group] gi|108709088|gb|ABF96883.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1708
Score = 282 bits (721), Expect = 5e-73
Identities = 198/576 (34%), Positives = 284/576 (49%), Gaps = 10/576 (1%)
Frame = +3
Query: 444 VNIATFKLQGAARDWWESAELTESE------PRFTELFFQEFVSDVSRDRKRSEFVNIEQ 605
V A +LQG A WW+ + T+ E RFT F + V K+ EF ++Q
Sbjct: 439 VIFAAHQLQGPASLWWDHFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQ 498
Query: 606 GQMSLAEFSNKYRSLARYVPEVASNDEVKDRRFIRALKPEISKQLAGFQVKTFQEALSRG 785
G S+ E+ +++ +LARY PE DE K +F+ + PE+S +L FQ + +
Sbjct: 499 GNRSVMEYLHEFNNLARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKS 558
Query: 786 FSXXXXXXXXXXXXXXXLKRVPKQLPVRQDPAKRLMTSMPGQTFF--RPSEQPWKMGSAS 959
L+ K+L + KR + + Q RP +Q + G+ +
Sbjct: 559 IR---------------LEAKHKEL----ESHKRRLANFRNQQGANQRPQQQQSQQGTRA 599
Query: 960 RPPSSSYTQPSVTRPDTLRTQGQTFRPQGRFVRLQQVRPTGSINLGHPTCFYCKESGYMK 1139
P + QPS R D QG PQ RL CF C E G+
Sbjct: 600 PRPPTPAVQPSQGRRDA---QG----PQ----RL---------------CFNCFEPGHFA 633
Query: 1140 KDCPVLQGGTSSSQQGMVYSVTQEGTPTETVSQEGEMMYAVL*GDGSATNQVVEGNISLF 1319
CP QQG G + + D T V+ G ++
Sbjct: 634 DKCP-----KPRRQQGQAPPRPNNGGKDVIRGRVNHVTAE----DVLTTPDVIVGTFLIY 684
Query: 1320 YHLVHVLFDTGSTHSFIKSDIVDELELDVTDVGKRLSLTSPLGGRTFPFQVCKSCVMIVD 1499
+LFD+G++HSFI V ++L V + L +T+P G T + S + ++
Sbjct: 685 SIPATILFDSGASHSFISVPFVGRIQLGVERLRNPLLITTPGGVMTAKYY---SPAVPIE 741
Query: 1500 TQEMI--ADLVVLDMHGFDVILGMDWLSKYHASVDCYTKTVHFHMPGKPPFTFVGVVKPQ 1673
Q + +DL++LD DVILGM+WL+++ VDC +TV + + P F P
Sbjct: 742 IQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPEQPVVFFA--PPT 799
Query: 1674 SWCQKLKGTGSLNGVGLLACVLDKSTSIETIPVVRDYGYVFPEVLPSLPPKRDIDFSIEL 1853
S + L+ +GL IP+VR++G VFPE LP +PPKR+I+F I+L
Sbjct: 800 S-----VRSSELHQIGL-----------SEIPIVREFGDVFPEELPGMPPKREIEFRIDL 843
Query: 1854 LPGTSPISVSPYRMAPLEMKELKTQIKELIRLGFTRPSFSPWGAPVLFVKKKDRSFRLCV 2033
PGT+P+ PYRMA E+ E+K Q++EL G+ RPS SPWGAPV+FV+KKD++ R+CV
Sbjct: 844 APGTAPLYKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCV 903
Query: 2034 DYKKLNKVTIKNNYPLPRIDDLFDQLKGSLYFSKTD 2141
DY+ LN+VTIKN YPLPRIDDLFDQLKG+ FSK D
Sbjct: 904 DYRALNEVTIKNKYPLPRIDDLFDQLKGATIFSKID 939
>gb|ABF95991.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1748
Score = 281 bits (719), Expect = 8e-73
Identities = 194/574 (33%), Positives = 277/574 (48%), Gaps = 8/574 (1%)
Frame = +3
Query: 444 VNIATFKLQGAARDWWESAELTESE------PRFTELFFQEFVSDVSRDRKRSEFVNIEQ 605
V A +LQG A WW+ + T+ E RFT F + V K+ EF ++Q
Sbjct: 365 VIFAAHQLQGPASLWWDHFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQ 424
Query: 606 GQMSLAEFSNKYRSLARYVPEVASNDEVKDRRFIRALKPEISKQLAGFQVKTFQEALSRG 785
G S+ E+ +++ +LARY PE DE K +F+ + PE+S +L FQ + +
Sbjct: 425 GNRSVMEYLHEFNNLARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKS 484
Query: 786 FSXXXXXXXXXXXXXXXLKRVPKQLPVRQDPAKRLMTSMPGQTFFRPSEQPWKMGSASRP 965
L Q Q R PG + + +QP + SA RP
Sbjct: 485 IRLEAKHKELESHKRR-LANFRNQQGANQ--RVRYTNPYPGGSSSQQQQQPQQSRSAPRP 541
Query: 966 PSSSYTQPSVTRPDTLRTQGQTFRPQGRFVRLQQVRPTGSINLGHPTCFYCKESGYMKKD 1145
V +P + Q T P+ +Q + CF C E G+
Sbjct: 542 QFVV----RVPQPQQQQNQQGTRAPRPPTPTVQPGQGRRDAQGQQRLCFNCFEPGHFADK 597
Query: 1146 CPVLQGGTSSSQQGMVYSVTQEGTPTETVSQEGEMMYAVL*GDGSATNQVVEGNISLFYH 1325
CP QQG G + + D T V+ G +
Sbjct: 598 CP-----KPRRQQGQAPPRPNNGGKDVIRGRVNHVTAE----DVLTTPDVIVGTFLIHSI 648
Query: 1326 LVHVLFDTGSTHSFIKSDIVDELELDVTDVGKRLSLTSPLGGRTFPFQVCKSCVMIVDTQ 1505
+LFD+G++HSFI V +L V + L +T+P G T + S + ++ Q
Sbjct: 649 PATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYY---SPAVPIEIQ 705
Query: 1506 EMI--ADLVVLDMHGFDVILGMDWLSKYHASVDCYTKTVHFHMPGKPPFTFVGVVKPQSW 1679
+ +DL++LD DVILGM+WL+++ VDC +TV + + P F P S
Sbjct: 706 GIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPEQPVVFFA--PPTS- 762
Query: 1680 CQKLKGTGSLNGVGLLACVLDKSTSIETIPVVRDYGYVFPEVLPSLPPKRDIDFSIELLP 1859
+ L+ +GL IP+VR++G VFPE LP +PPKR+I+F I+L P
Sbjct: 763 ----VRSSELHQIGLAE-----------IPIVREFGDVFPEELPGMPPKREIEFRIDLAP 807
Query: 1860 GTSPISVSPYRMAPLEMKELKTQIKELIRLGFTRPSFSPWGAPVLFVKKKDRSFRLCVDY 2039
GT+P+ PYRMA E+ E+K Q++EL G+ RPS SPWGAPV+FV+KKD++ R+CVDY
Sbjct: 808 GTTPLHKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDY 867
Query: 2040 KKLNKVTIKNNYPLPRIDDLFDQLKGSLYFSKTD 2141
+ LN+VTIKN YPLPRIDDLFDQLKG+ FSK D
Sbjct: 868 RALNEVTIKNKYPLPRIDDLFDQLKGATIFSKID 901
>gb|AAK13122.1|AC080019_14 Polyprotein [Oryza sativa Japonica Group]
Length = 2017
Score = 281 bits (718), Expect = 1e-72
Identities = 192/575 (33%), Positives = 279/575 (48%), Gaps = 9/575 (1%)
Frame = +3
Query: 444 VNIATFKLQGAARDWWESAELTESE------PRFTELFFQEFVSDVSRDRKRSEFVNIEQ 605
V A +LQG A WW+ + T+ E RFT F + V K+ EF ++Q
Sbjct: 693 VIFAAHQLQGPASLWWDHFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQ 752
Query: 606 GQMSLAEFSNKYRSLARYVPEVASNDEVKDRRFIRALKPEISKQLAGFQVKTFQEALSRG 785
G S+ E+ +++ +LARY PE DE K +F+ + PE+S +L FQ + +
Sbjct: 753 GNRSVMEYLHEFNNLARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYLDFQRLVDKS 812
Query: 786 FSXXXXXXXXXXXXXXXLKRVPKQLPVRQDPAKRLMTSMPGQTFFRPSEQPWKMGSASRP 965
L Q Q R PG + + +Q + SA RP
Sbjct: 813 IRLEAKHKELESHKRR-LANFRNQQGANQ--RVRYTNPYPGGSSSQQQQQQQQPRSAPRP 869
Query: 966 PSSSYTQPSVTRPDTLRTQGQTFRPQGRFVRLQQVRPTGSINLGHPTCFYCKESGYMKKD 1145
V +P ++Q T P+ +Q + + CF C E G+
Sbjct: 870 QFVV----RVPQPQQQQSQQGTRAPRPPTPTVQPGQGRRDASGPQRLCFNCFEPGHFADK 925
Query: 1146 CPVLQGGTSSSQQGMVYSVTQEGTPTETVSQEGEMMYAVL*GDGSATNQVVEGNISLFYH 1325
CP QQG + G + + D T V+ G +
Sbjct: 926 CP-----KPRHQQGQAPPCSNNGGKDVIRGRVNHVTAE----DVLTTPDVIVGTFLIHSI 976
Query: 1326 LVHVLFDTGSTHSFIKSDIVDELELDVTDVGKRLSLTSPLGGRTFPFQVCKSCVMIVDTQ 1505
+LFD+G++HSFI + +L + + L +T+P G T + S + ++ Q
Sbjct: 977 PATILFDSGASHSFISVPFMGRNQLGIERLRNPLLITTPGGVMTAKYY---SPAVPIEIQ 1033
Query: 1506 EMI--ADLVVLDMHGFDVILGMDWLSKYHASVDCYTKTVHFHM-PGKPPFTFVGVVKPQS 1676
+ +DL++LD DVILGM+WL+++ VDC +TV + PG+P F S
Sbjct: 1034 GIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPGQPVVFFAPPTSVSS 1093
Query: 1677 WCQKLKGTGSLNGVGLLACVLDKSTSIETIPVVRDYGYVFPEVLPSLPPKRDIDFSIELL 1856
L+ +GL IP+VR++G VFPE LP +PPKR+I+F I+L
Sbjct: 1094 --------SELHQIGL-----------SEIPIVREFGDVFPEELPGMPPKREIEFQIDLA 1134
Query: 1857 PGTSPISVSPYRMAPLEMKELKTQIKELIRLGFTRPSFSPWGAPVLFVKKKDRSFRLCVD 2036
PGT+P+ PYRMA E+ E+K Q++EL G+ RPS SPWGAPV+FV+KKD++ R+CVD
Sbjct: 1135 PGTTPLCKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVD 1194
Query: 2037 YKKLNKVTIKNNYPLPRIDDLFDQLKGSLYFSKTD 2141
Y+ LN+VTIKN YPLPRIDDLFDQLKG+ FSK D
Sbjct: 1195 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKID 1229
>gb|ABB47441.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1802
Score = 281 bits (718), Expect = 1e-72
Identities = 192/575 (33%), Positives = 279/575 (48%), Gaps = 9/575 (1%)
Frame = +3
Query: 444 VNIATFKLQGAARDWWESAELTESE------PRFTELFFQEFVSDVSRDRKRSEFVNIEQ 605
V A +LQG A WW+ + T+ E RFT F + V K+ EF ++Q
Sbjct: 453 VIFAAHQLQGPASLWWDHFQATQPEGQPITWARFTAAFRRTHVPAGVVALKKREFRELKQ 512
Query: 606 GQMSLAEFSNKYRSLARYVPEVASNDEVKDRRFIRALKPEISKQLAGFQVKTFQEALSRG 785
G S+ E+ +++ +LARY PE DE K +F+ + PE+S +L FQ + +
Sbjct: 513 GNRSVMEYLHEFNNLARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYLDFQRLVDKS 572
Query: 786 FSXXXXXXXXXXXXXXXLKRVPKQLPVRQDPAKRLMTSMPGQTFFRPSEQPWKMGSASRP 965
L Q Q R PG + + +Q + SA RP
Sbjct: 573 IRLEAKHKELESHKRR-LANFRNQQGANQ--RVRYTNPYPGGSSSQQQQQQQQPRSAPRP 629
Query: 966 PSSSYTQPSVTRPDTLRTQGQTFRPQGRFVRLQQVRPTGSINLGHPTCFYCKESGYMKKD 1145
V +P ++Q T P+ +Q + + CF C E G+
Sbjct: 630 QFVV----RVPQPQQQQSQQGTRAPRPPTPTVQPGQGRRDASGPQRLCFNCFEPGHFADK 685
Query: 1146 CPVLQGGTSSSQQGMVYSVTQEGTPTETVSQEGEMMYAVL*GDGSATNQVVEGNISLFYH 1325
CP QQG + G + + D T V+ G +
Sbjct: 686 CP-----KPRHQQGQAPPCSNNGGKDVIRGRVNHVTAE----DVLTTPDVIVGTFLIHSI 736
Query: 1326 LVHVLFDTGSTHSFIKSDIVDELELDVTDVGKRLSLTSPLGGRTFPFQVCKSCVMIVDTQ 1505
+LFD+G++HSFI + +L + + L +T+P G T + S + ++ Q
Sbjct: 737 PATILFDSGASHSFISVPFMGRNQLGIERLRNPLLITTPGGVMTAKYY---SPAVPIEIQ 793
Query: 1506 EMI--ADLVVLDMHGFDVILGMDWLSKYHASVDCYTKTVHFHM-PGKPPFTFVGVVKPQS 1676
+ +DL++LD DVILGM+WL+++ VDC +TV + PG+P F S
Sbjct: 794 GIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPGQPVVFFAPPTSVSS 853
Query: 1677 WCQKLKGTGSLNGVGLLACVLDKSTSIETIPVVRDYGYVFPEVLPSLPPKRDIDFSIELL 1856
L+ +GL IP+VR++G VFPE LP +PPKR+I+F I+L
Sbjct: 854 --------SELHQIGL-----------SEIPIVREFGDVFPEELPGMPPKREIEFQIDLA 894
Query: 1857 PGTSPISVSPYRMAPLEMKELKTQIKELIRLGFTRPSFSPWGAPVLFVKKKDRSFRLCVD 2036
PGT+P+ PYRMA E+ E+K Q++EL G+ RPS SPWGAPV+FV+KKD++ R+CVD
Sbjct: 895 PGTTPLCKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCVD 954
Query: 2037 YKKLNKVTIKNNYPLPRIDDLFDQLKGSLYFSKTD 2141
Y+ LN+VTIKN YPLPRIDDLFDQLKG+ FSK D
Sbjct: 955 YRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKID 989
>gb|AAX96590.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|77550403|gb|ABA93200.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1640
Score = 281 bits (718), Expect = 1e-72
Identities = 186/577 (32%), Positives = 279/577 (48%), Gaps = 11/577 (1%)
Frame = +3
Query: 444 VNIATFKLQGAARDWWESAELTESEPRFTELFFQEFVSDVSRDR--------KRSEFVNI 599
V+ A+ +L G A +WW+ +E + +QEF + + K+ EF +
Sbjct: 418 VSFASHQLHGPAAEWWDHFRQNRAEG--DPITWQEFTAAFKKTHIPLGVVALKKREFRAL 475
Query: 600 EQGQMSLAEFSNKYRSLARYVPEVASNDEVKDRRFIRALKPEISKQLAGFQVKTFQEALS 779
QG S+ E+ + + LARY PE DE + +F+ L E+S L + FQ+ +
Sbjct: 476 NQGSHSVTEYLHDFNHLARYAPEDVLTDEERQEKFLEGLNDELSYALMSTDYQDFQQLVD 535
Query: 780 RGFSXXXXXXXXXXXXXXXLKRVPKQLPVRQDPAKRLMTSMPGQTFFRPSEQPWKMG--- 950
+ KR Q +Q ++R ++ P P+ G
Sbjct: 536 KAIRQEDKYNRMEQK-----KRRAAQFKAQQGSSQRPRIALG------PQAAPYPQGGFS 584
Query: 951 SASRPPSSSYTQPSVTRPDTLRTQGQTFRPQGRFVRLQQVRPTGSINLGHPTCFYCKESG 1130
S +RP Y + R + R RP + Q +R LG CF C + G
Sbjct: 585 SVTRPQRQFYNNNTGNRSNDNRNV--VARPVAAPTQNQPIRKEQGSKLG--VCFNCGDPG 640
Query: 1131 YMKKDCPVLQGGTSSSQQGMVYSVTQEGTPTETVSQEGEMMYAVL*GDGSATNQVVEGNI 1310
+ CP + + V + + P V+ V + VV G
Sbjct: 641 HYADKCPKPR----CVKNAPVQNNSNAPAPKARVNH-------VAVAEAQNAPDVVLGTF 689
Query: 1311 SLFYHLVHVLFDTGSTHSFIKSDIVDELELDVTDVGKRLSLTSPLGGRTFPFQVCKSCVM 1490
+ VLFD+G+THSF+ ++V +G+ L + +P G + Q C S +
Sbjct: 690 PVNSIPAFVLFDSGATHSFLSKSFASNHGMEVISLGRPLLVNTP-GNQVSSTQYCPSVTI 748
Query: 1491 IVDTQEMIADLVVLDMHGFDVILGMDWLSKYHASVDCYTKTVHFHMPGKPPFTFVGVVKP 1670
++ + L++L+ DVILGMDWLS++ +DC + V +F V P
Sbjct: 749 EIEEIPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTSSNGETVSFF-VSSP 807
Query: 1671 QSWCQKLKGTGSLNGVGLLACVLDKSTSIETIPVVRDYGYVFPEVLPSLPPKRDIDFSIE 1850
+S +G+ L +++ IP+VRDY VFPE LP +PPKRDI+F I+
Sbjct: 808 KS-----------HGLTL------NQVALQEIPIVRDYPDVFPEDLPGMPPKRDIEFRID 850
Query: 1851 LLPGTSPISVSPYRMAPLEMKELKTQIKELIRLGFTRPSFSPWGAPVLFVKKKDRSFRLC 2030
L+PGT+PI PYRMA E+ E+K Q+ +L++ G+ RPS SPWGAPV+FV+KKD + R+C
Sbjct: 851 LVPGTNPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMC 910
Query: 2031 VDYKKLNKVTIKNNYPLPRIDDLFDQLKGSLYFSKTD 2141
VDY LN+VTIKN YPLPRIDDLFDQL+G+ +FSK D
Sbjct: 911 VDYHALNEVTIKNKYPLPRIDDLFDQLEGATFFSKID 947
>gb|AAX95202.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|77549495|gb|ABA92292.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1795
Score = 281 bits (718), Expect = 1e-72
Identities = 196/576 (34%), Positives = 281/576 (48%), Gaps = 10/576 (1%)
Frame = +3
Query: 444 VNIATFKLQGAARDWWESAELTESE------PRFTELFFQEFVSDVSRDRKRSEFVNIEQ 605
V A +LQG A WW+ + T+ E RFT F + V K+ EF ++Q
Sbjct: 412 VVFAAHQLQGPASLWWDHFQATQPEGQPITWTRFTAAFRRTHVPAGVVALKKREFRELKQ 471
Query: 606 GQMSLAEFSNKYRSLARYVPEVASNDEVKDRRFIRALKPEISKQLAGFQVKTFQEALSRG 785
G S+ E+ +++ +LARY PE DE K +F+ + PE+S +L FQ + +
Sbjct: 472 GNRSVMEYLHEFNNLARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKS 531
Query: 786 FSXXXXXXXXXXXXXXXLKRVPKQLPVRQDPAKRLMTSMPGQTFFRPSEQPWKMGSASRP 965
L Q Q R PG + + +Q + SA RP
Sbjct: 532 IRLEAKHKELESHKRR-LANFRNQQGANQ--RVRYTNPYPGGSSSQQQQQQQQPRSAPRP 588
Query: 966 PSSSYTQPSVTRPDTLRTQGQ--TFRPQGRFVRLQQVRPTGSINLGHPTCFYCKESGYMK 1139
Q V P + Q Q T P+ +Q V+ + CF C E G+
Sbjct: 589 ------QFVVRVPQQQQQQNQQGTRAPRPPTPTVQPVQGRRDASGPQRLCFNCFEPGHFA 642
Query: 1140 KDCPVLQGGTSSSQQGMVYSVTQEGTPTETVSQEGEMMYAVL*GDGSATNQVVEGNISLF 1319
CP QQG + G + + D T V+ G +
Sbjct: 643 DKCP-----KPRRQQGQAPPRSNNGGKDVIRGRVNHVTAE----DVLTTPDVIVGTFLVH 693
Query: 1320 YHLVHVLFDTGSTHSFIKSDIVDELELDVTDVGKRLSLTSPLGGRTFPFQVCKSCVMIVD 1499
+LFD+G++HSFI V +L V + L +T+P G T + S + ++
Sbjct: 694 SIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYY---SPAVPIE 750
Query: 1500 TQEMI--ADLVVLDMHGFDVILGMDWLSKYHASVDCYTKTVHFHMPGKPPFTFVGVVKPQ 1673
Q + +DL++LD DVILGM+WL+++ VDC +TV + + P F P
Sbjct: 751 IQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPEQPVVFFA--PPT 808
Query: 1674 SWCQKLKGTGSLNGVGLLACVLDKSTSIETIPVVRDYGYVFPEVLPSLPPKRDIDFSIEL 1853
S + L+ +GL IP+VR++G VFPE LP +PPKR+I+F I+L
Sbjct: 809 S-----VRSSELHQIGL-----------SEIPIVREFGDVFPEELPGMPPKREIEFRIDL 852
Query: 1854 LPGTSPISVSPYRMAPLEMKELKTQIKELIRLGFTRPSFSPWGAPVLFVKKKDRSFRLCV 2033
+PGT+P+ PYRMA E+ E+K Q++EL G+ RPS SPWGAPV+FV+KKD++ R+CV
Sbjct: 853 VPGTTPLHKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCV 912
Query: 2034 DYKKLNKVTIKNNYPLPRIDDLFDQLKGSLYFSKTD 2141
DY+ LN+VTIKN YPLPRIDDLFDQLKG+ FSK D
Sbjct: 913 DYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKID 948
>emb|CAE05306.2| OSJNBa0056L23.4 [Oryza sativa Japonica Group]
Length = 1785
Score = 281 bits (718), Expect = 1e-72
Identities = 196/576 (34%), Positives = 280/576 (48%), Gaps = 10/576 (1%)
Frame = +3
Query: 444 VNIATFKLQGAARDWWESAELTESE------PRFTELFFQEFVSDVSRDRKRSEFVNIEQ 605
V A +LQG A WW+ + T+ E RFT F + V K+ EF ++Q
Sbjct: 402 VTFAAHQLQGPASLWWDHFQATQPEGQPITWTRFTAAFRRTHVPAGVVALKKREFRELKQ 461
Query: 606 GQMSLAEFSNKYRSLARYVPEVASNDEVKDRRFIRALKPEISKQLAGFQVKTFQEALSRG 785
G S+ E+ +++ +LARY PE DE K +F+ + PE+S +L FQ + +
Sbjct: 462 GNRSVMEYLHEFNNLARYAPEDVREDEEKQEKFLAGMDPELSVRLVSGDYPDFQRLVDKS 521
Query: 786 FSXXXXXXXXXXXXXXXLKRVPKQLPVRQDPAKRLMTSMPGQTFFRPSEQPWKMGSASRP 965
L Q Q R PG + + +Q + SA RP
Sbjct: 522 IRLEAKHKELESHKRR-LANFRNQQGANQ--RVRYTNPYPGGSSSQQQQQQQQPRSAPRP 578
Query: 966 PSSSYTQPSVTRPDTLRTQGQ--TFRPQGRFVRLQQVRPTGSINLGHPTCFYCKESGYMK 1139
Q V P + Q Q T P+ +Q V+ + CF C E G+
Sbjct: 579 ------QFVVRVPQQQQQQNQQGTRAPRPPTPTVQPVQGRRDASGPQRLCFNCFEPGHFA 632
Query: 1140 KDCPVLQGGTSSSQQGMVYSVTQEGTPTETVSQEGEMMYAVL*GDGSATNQVVEGNISLF 1319
CP QQG + G + + D T V+ G +
Sbjct: 633 DKCP-----KPRRQQGQAPPRSNNGGKDVIRGRVNHVTAE----DVLTTPDVIVGTFLVH 683
Query: 1320 YHLVHVLFDTGSTHSFIKSDIVDELELDVTDVGKRLSLTSPLGGRTFPFQVCKSCVMIVD 1499
+LFD+G++HSFI V +L V + L +T+P G T + S + ++
Sbjct: 684 SIPATILFDSGASHSFISVPFVGRNQLGVERLRNPLLITTPGGVMTAKYY---SPAVPIE 740
Query: 1500 TQEMI--ADLVVLDMHGFDVILGMDWLSKYHASVDCYTKTVHFHMPGKPPFTFVGVVKPQ 1673
Q + +DL++LD DVILGM+WL+++ VDC +TV + + P F P
Sbjct: 741 IQGIPFPSDLILLDTKNLDVILGMNWLAQFQGVVDCARRTVTLYRGPEQPVVFFA--PPT 798
Query: 1674 SWCQKLKGTGSLNGVGLLACVLDKSTSIETIPVVRDYGYVFPEVLPSLPPKRDIDFSIEL 1853
S + L+ +GL IP+VR++G VFPE LP +PPKR+I+F I+L
Sbjct: 799 S-----VRSSELHQIGL-----------SEIPIVREFGDVFPEELPGMPPKREIEFRIDL 842
Query: 1854 LPGTSPISVSPYRMAPLEMKELKTQIKELIRLGFTRPSFSPWGAPVLFVKKKDRSFRLCV 2033
PGT+P+ PYRMA E+ E+K Q++EL G+ RPS SPWGAPV+FV+KKD++ R+CV
Sbjct: 843 APGTTPLYKRPYRMAANELAEVKKQLEELKEKGYIRPSTSPWGAPVIFVEKKDKTKRMCV 902
Query: 2034 DYKKLNKVTIKNNYPLPRIDDLFDQLKGSLYFSKTD 2141
DY+ LN+VTIKN YPLPRIDDLFDQLKG+ FSK D
Sbjct: 903 DYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKID 938