BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00014568
         (1488 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,...   515   e-143
ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ...   515   e-143
ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prun...   511   e-142
ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao] g...   509   e-141
ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,...   505   e-140
gb|EXB72455.1| RNA polymerase sigma factor rpoD [Morus notabilis]     503   e-140
gb|EYU19623.1| hypothetical protein MIMGU_mgv1a020453mg [Mimulus...   502   e-139
ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,...   502   e-139
ref|XP_006376620.1| RNA polymerase sigma subunit SigE family pro...   495   e-137
ref|XP_006593758.1| PREDICTED: RNA polymerase sigma factor sigE,...   489   e-135
ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor sigE,...   489   e-135
ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [...   488   e-135
dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila]     484   e-134
ref|XP_004234180.1| PREDICTED: RNA polymerase sigma factor sigE,...   482   e-133
ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,...   480   e-133
ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citr...   479   e-132
ref|NP_001254001.1| RNA polymerase sigma factor rpoD-like [Glyci...   478   e-132
ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,...   477   e-132
ref|NP_197800.1| RNA polymerase sigma factor 5 [Arabidopsis thal...   473   e-130
ref|XP_006287402.1| hypothetical protein CARUB_v10000608mg, part...   473   e-130

>ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 516

 Score =  515 bits (1326), Expect = e-143
 Identities = 265/392 (67%), Positives = 308/392 (78%), Gaps = 4/392 (1%)
 Frame = -1

Query: 1488 RRRYRKKAGEGNKEDGREVNDFVVRNPEKKAKRLNLANRIAS-RRKXXXXXESVSSQGYK 1312
            R R RK+  EG++E  +EV D VV+N  K +KRLNL  RIA  + K      S   +  K
Sbjct: 125  RPRTRKRIVEGDEEAKKEVADNVVKNRRKTSKRLNLDQRIALLKNKEGEMVASSERRKLK 184

Query: 1311 DSVEQRNVNRLIREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKDML 1132
            +  E   +++L+REYS ATD  S+DWKKMKIPPVLP+SEH WLFKLMQPMKA+L+ K+ L
Sbjct: 185  EDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHVWLFKLMQPMKAILQVKENL 244

Query: 1131 HKDIGKEPTSNELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFANG 952
              D+G+EPT  E+A A NM + ELRK L VGRAARNKLIKHNLRLVLF +NKYFQ+FANG
Sbjct: 245  QNDLGREPTDGEVAEATNMDASELRKKLEVGRAARNKLIKHNLRLVLFVMNKYFQDFANG 304

Query: 951  AKFQDLCQAGAKGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLESV 772
            ++FQDLCQAG KGLI AIDRFEP RK +LSTYGLFWIRHAI+RSMT SSFT+V +GLES+
Sbjct: 305  SRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRSMTTSSFTKVPFGLESI 364

Query: 771  RVEIQKTKLQLMFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEEFI 592
            RVEIQK KL+L+FEL RIP +EEI  ++G+S ERYHEVM+ S+ V SLHAR+ TTQEE I
Sbjct: 365  RVEIQKAKLELLFELQRIPTDEEIIRRVGLSPERYHEVMKVSKPVSSLHARNKTTQEELI 424

Query: 591  NGITD---FDGDKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAGNL 421
            NGITD    DGDKR QP             LKPKE+LVIRQRYGLDGKGDRTLGEIAGNL
Sbjct: 425  NGITDVDGVDGDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNL 484

Query: 420  NISREMVRKHEVKALMKLKHPTRVDYLRRHIF 325
            NISREMVRKHEVKALMKLKHPTRVDY+RR+IF
Sbjct: 485  NISREMVRKHEVKALMKLKHPTRVDYVRRYIF 516


>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|302143685|emb|CBI22546.3| unnamed protein product
            [Vitis vinifera]
          Length = 518

 Score =  515 bits (1326), Expect = e-143
 Identities = 271/392 (69%), Positives = 315/392 (80%), Gaps = 5/392 (1%)
 Frame = -1

Query: 1485 RRYRKKAGEGNKEDGREVNDFVVRNPEKKAKRLNLANRIA-SRRKXXXXXESVSSQGYKD 1309
            R+ RK+    + +  +EV+D VVR   KK KRL+L  RIA S+ K      S+  +  +D
Sbjct: 129  RQRRKRVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALSKMKQEKAVASIQKK--RD 186

Query: 1308 SV-EQRNVNRLIREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKDML 1132
            S  E  N++ L+REYS +TD VS+DWKKMKIPPVLP SEHAWLFKLMQPMK LLE KD L
Sbjct: 187  SKNEDENIDVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGLLEVKDNL 246

Query: 1131 HKDIGKEPTSNELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFANG 952
             KD+G+EPT  ELA A++MS+V++R+H+ VG+AARNKLIKHNLRLVLF INKYFQEFANG
Sbjct: 247  QKDLGREPTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKYFQEFANG 306

Query: 951  AKFQDLCQAGAKGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLESV 772
             KFQDLCQAG KGLI AIDRFEPKR  +LSTYGLFWIRHAIMRSMTLSSFTRVS+GLESV
Sbjct: 307  PKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRVSFGLESV 366

Query: 771  RVEIQKTKLQLMFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEEFI 592
            RVEIQ+ KL+L+F+L R+P EEEI EK+GIS ERYHEVMRAS+ V+SLHARH TTQEE+I
Sbjct: 367  RVEIQRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEEYI 426

Query: 591  NGITDFD---GDKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAGNL 421
            NGITD +   GD+  Q              LKPKE+LV+RQRYGLDGKGDRTLGEIAGNL
Sbjct: 427  NGITDVEGVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLGEIAGNL 486

Query: 420  NISREMVRKHEVKALMKLKHPTRVDYLRRHIF 325
            +ISREMVRKHEVKALMKLKHP RVDYLR++IF
Sbjct: 487  SISREMVRKHEVKALMKLKHPARVDYLRQYIF 518


>ref|XP_007219010.1| hypothetical protein PRUPE_ppa004259mg [Prunus persica]
            gi|462415472|gb|EMJ20209.1| hypothetical protein
            PRUPE_ppa004259mg [Prunus persica]
          Length = 519

 Score =  511 bits (1316), Expect = e-142
 Identities = 266/391 (68%), Positives = 305/391 (78%), Gaps = 5/391 (1%)
 Frame = -1

Query: 1485 RRYRKKAGEGNKE-DGREVNDFVVRNPEKKAKRLNLANRIASR-RKXXXXXESVSSQGYK 1312
            R+ RKK  E + + D    ++ VVRN  KKAKRL+L  R+A +  K      S+  +   
Sbjct: 128  RKRRKKTSESDADKDENRTSNTVVRNRTKKAKRLSLNKRVALKWNKDEKVISSIVRKRKS 187

Query: 1311 DSVEQRNVNRLIREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKDML 1132
               E   +  L+REYS +TD VS+DWKKMKIPPVL +SEHAWLFKLMQPMK LLE K+ L
Sbjct: 188  RKNENEKIEELVREYSTSTDLVSLDWKKMKIPPVLTSSEHAWLFKLMQPMKGLLEVKENL 247

Query: 1131 HKDIGKEPTSNELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFANG 952
             KD+G+EPT+ ELA A NMS V+++KHL VGRAAR+KLIKHNLRLVLF +NKYFQ+FANG
Sbjct: 248  QKDLGREPTNGELAEATNMSVVQVKKHLEVGRAARSKLIKHNLRLVLFVMNKYFQDFANG 307

Query: 951  AKFQDLCQAGAKGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLESV 772
             KFQDLCQAG KGLI AIDRFEPKR  +LSTYGLFWIRHAI+RSMTLSSFTRVS+GLESV
Sbjct: 308  PKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESV 367

Query: 771  RVEIQKTKLQLMFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEEFI 592
            R EIQK KL ++F L R+P E+EI EK+GIS ERYHEVMRAS+ V SLH+RH TTQEEFI
Sbjct: 368  RAEIQKAKLGMLFALKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLHSRHTTTQEEFI 427

Query: 591  NGITDFD---GDKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAGNL 421
            NGITD D   GD R +P             LKPKE+LVIRQRYGLDGKGDRTLGEIAGNL
Sbjct: 428  NGITDVDGVEGDNRQKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNL 487

Query: 420  NISREMVRKHEVKALMKLKHPTRVDYLRRHI 328
            NISREMVRKHEVKALMKLKHP RVDYLRR++
Sbjct: 488  NISREMVRKHEVKALMKLKHPARVDYLRRYV 518


>ref|XP_007038959.1| Sigma factor E isoform 1 [Theobroma cacao]
            gi|590673674|ref|XP_007038960.1| Sigma factor E isoform 1
            [Theobroma cacao] gi|508776204|gb|EOY23460.1| Sigma
            factor E isoform 1 [Theobroma cacao]
            gi|508776205|gb|EOY23461.1| Sigma factor E isoform 1
            [Theobroma cacao]
          Length = 516

 Score =  509 bits (1311), Expect = e-141
 Identities = 261/390 (66%), Positives = 308/390 (78%), Gaps = 4/390 (1%)
 Frame = -1

Query: 1485 RRYRKKAGEGNKEDGREVND-FVVRNPEKKAKRLNLANRIASRRKXXXXXESVSSQGYKD 1309
            RR R+K  + + E G   ND  VVRN   + KRL+L NRIA ++           +    
Sbjct: 126  RRQRRKRSKESDEKGVNSNDQIVVRNQTNRIKRLSLDNRIALKKNREEKPVVSVRRKKSS 185

Query: 1308 SVEQRNVNRLIREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKDMLH 1129
              E   ++RL+R+YS +TD VS+DW+KMKIPPVLP+ EH WLFKLMQPMKALL++K+ L 
Sbjct: 186  ENESEKIDRLVRDYSASTDLVSLDWRKMKIPPVLPSIEHTWLFKLMQPMKALLQAKENLQ 245

Query: 1128 KDIGKEPTSNELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFANGA 949
            KD+G++PT +ELA A NMS+ ++RKHL VG+AARNKLIKHNLRLVLF+INKYFQ+FANG 
Sbjct: 246  KDLGRDPTEDELAEATNMSAAQVRKHLEVGQAARNKLIKHNLRLVLFSINKYFQDFANGP 305

Query: 948  KFQDLCQAGAKGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLESVR 769
            +FQDLCQAG KGLI AIDRFEP+R+ +LSTY LFWIRHAI+RSMTLSSFTRVS+GLESVR
Sbjct: 306  RFQDLCQAGVKGLITAIDRFEPRRRFRLSTYSLFWIRHAIIRSMTLSSFTRVSFGLESVR 365

Query: 768  VEIQKTKLQLMFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEEFIN 589
            VEIQ+ KL+L+FEL+R P EEEI +K+GIS ERY EVMRAS+ V SLH+RH+ TQEEFIN
Sbjct: 366  VEIQRAKLELLFELHREPTEEEIIKKVGISPERYQEVMRASKPVASLHSRHSVTQEEFIN 425

Query: 588  GITDFD---GDKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAGNLN 418
            GITD D   GD R QP             LKPKE+LVIRQRYGLDGKGDRTLGEIAGNLN
Sbjct: 426  GITDIDGVGGDHRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLN 485

Query: 417  ISREMVRKHEVKALMKLKHPTRVDYLRRHI 328
            ISREMVRKHEVKALMKLKHP RVDYLRR++
Sbjct: 486  ISREMVRKHEVKALMKLKHPARVDYLRRYV 515


>ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform 1 [Solanum
            lycopersicum]
          Length = 516

 Score =  505 bits (1301), Expect = e-140
 Identities = 259/392 (66%), Positives = 304/392 (77%), Gaps = 4/392 (1%)
 Frame = -1

Query: 1488 RRRYRKKAGEGNKEDGREVNDFVVRNPEKKAKRLNLANRIAS-RRKXXXXXESVSSQGYK 1312
            R R RK+  E ++E  +EV D VV+N  KK+KRLNL  RIA  + K      S   +   
Sbjct: 125  RPRTRKRIVESDEEAKKEVVDNVVKNRRKKSKRLNLDQRIALLKNKEGKMLASSERRKLN 184

Query: 1311 DSVEQRNVNRLIREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKDML 1132
            +  E   +++L+REYS ATD  S+DWKKMKIPPVLP+SEH WLFKLMQPMKA+L+ K+ L
Sbjct: 185  EDTEDEKIDKLVREYSGATDLASLDWKKMKIPPVLPSSEHTWLFKLMQPMKAILQVKENL 244

Query: 1131 HKDIGKEPTSNELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFANG 952
              D+G+EPT  E+A A NM + ELRK L  GRAARNKLIKHNLRLVLF +NKYFQ+FAN 
Sbjct: 245  QNDLGREPTDGEVAEATNMDASELRKKLEAGRAARNKLIKHNLRLVLFVMNKYFQDFANA 304

Query: 951  AKFQDLCQAGAKGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLESV 772
            ++FQDLCQAG KGLI AIDRFEP RK +LSTYGLFWIRHAI+R MT SSFT+V +GLES+
Sbjct: 305  SRFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRYMTTSSFTKVPFGLESI 364

Query: 771  RVEIQKTKLQLMFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEEFI 592
            RVEIQK KL+L+FEL RIP ++EI +++G S ERYHEVM+ S+ + SLHAR+ TTQEE I
Sbjct: 365  RVEIQKAKLELLFELQRIPTDDEIIKRVGFSPERYHEVMKVSKPIFSLHARNKTTQEELI 424

Query: 591  NGITD---FDGDKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAGNL 421
            NGITD    DGDKR QP             LKPKE+LVIRQRYGLDGKGDRTLGEIAGNL
Sbjct: 425  NGITDVDGVDGDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNL 484

Query: 420  NISREMVRKHEVKALMKLKHPTRVDYLRRHIF 325
            NISREMVRKHEVKALMKLKHPTRVDY+RR+IF
Sbjct: 485  NISREMVRKHEVKALMKLKHPTRVDYVRRYIF 516


>gb|EXB72455.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 517

 Score =  503 bits (1295), Expect = e-140
 Identities = 260/393 (66%), Positives = 309/393 (78%), Gaps = 6/393 (1%)
 Frame = -1

Query: 1488 RRRYRKKAGEGNKEDGRE--VNDFVVRNPEKKAKRLNLANRIASRRKXXXXXESVSSQGY 1315
            RRR  K  GE ++  G++   +D VVRN +KKAKRL+L  R+  +R        V  +  
Sbjct: 124  RRRRSKVIGESDERAGKKSTTSDTVVRNRKKKAKRLSLHKRVELKRDKEENVAVVLVRKR 183

Query: 1314 KDSV-EQRNVNRLIREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKD 1138
            ++S+ E+  + +L+REYS +TD VS+DWKKMKIPPVLP+SEH WLFKLMQP+K L +  +
Sbjct: 184  RESLNEEEKIEKLVREYSASTDLVSLDWKKMKIPPVLPSSEHTWLFKLMQPLKQLFQVGE 243

Query: 1137 MLHKDIGKEPTSNELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFA 958
             L K +G+EPT NELA A N+S V++++HL  GRAARNKLIKHNLRLVLF +NKYFQ+F 
Sbjct: 244  DLQKTLGREPTENELAEATNISVVQVKRHLEAGRAARNKLIKHNLRLVLFVMNKYFQDFT 303

Query: 957  NGAKFQDLCQAGAKGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLE 778
            NG KFQDLCQAG +GLI AIDRFEPKR+ +LSTYGLFWIRHAI+RSMT+SSFTRVS+GLE
Sbjct: 304  NGPKFQDLCQAGVRGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVSFGLE 363

Query: 777  SVRVEIQKTKLQLMFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEE 598
            SVR EIQK K++L FEL R+P EEEI EK+GIS ERYHEVMRAS+ VISL++RH TTQEE
Sbjct: 364  SVRAEIQKAKIELTFELKRLPTEEEIIEKVGISPERYHEVMRASKPVISLNSRHVTTQEE 423

Query: 597  FINGITD---FDGDKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAG 427
            FIN ITD    DGD R +P             LKPKE+LVIRQRYGLDGKGDRTLGEIAG
Sbjct: 424  FINAITDVDGVDGDDRRKPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAG 483

Query: 426  NLNISREMVRKHEVKALMKLKHPTRVDYLRRHI 328
            NLNISREMVRKHEVKALMKLKHP RVDYLRR++
Sbjct: 484  NLNISREMVRKHEVKALMKLKHPARVDYLRRYM 516


>gb|EYU19623.1| hypothetical protein MIMGU_mgv1a020453mg [Mimulus guttatus]
          Length = 515

 Score =  502 bits (1293), Expect = e-139
 Identities = 256/394 (64%), Positives = 312/394 (79%), Gaps = 6/394 (1%)
 Frame = -1

Query: 1488 RRRYRKKAGEGNKEDGREVNDFVVRNPEKKAKRLNLANRIASRRKXXXXXESVSSQ---G 1318
            RR+ RK+      ++  ++ D VVR+   K +RLNL  RIA R K      ++  +   G
Sbjct: 125  RRQPRKRTEYA--DEAEKIADNVVRSRRSKDRRLNLEKRIALRTKKEDESTAIFQRRKTG 182

Query: 1317 YKDSVEQRNVNRLIREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKD 1138
              D  E   ++RL+R+YS ++D VS+DWKKMKIPPVLP++EH WLFKLMQP+KA+L+ K+
Sbjct: 183  KND--EDEKIDRLVRDYSASSDLVSLDWKKMKIPPVLPSAEHVWLFKLMQPVKAILDVKE 240

Query: 1137 MLHKDIGKEPTSNELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFA 958
             +  ++G+EPT  +LA A+NM +V+LRK L +GRAARNKLIKHNLRLVLF +NKYFQ+F+
Sbjct: 241  TIENNLGREPTDEKLATAINMDTVQLRKQLEIGRAARNKLIKHNLRLVLFVMNKYFQDFS 300

Query: 957  NGAKFQDLCQAGAKGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLE 778
            NG++FQDLCQAGAKGLI AIDRFEPKRK +LSTYGLFWIRH+I+RSMTLSSFT+VS+GLE
Sbjct: 301  NGSRFQDLCQAGAKGLITAIDRFEPKRKLRLSTYGLFWIRHSIIRSMTLSSFTKVSFGLE 360

Query: 777  SVRVEIQKTKLQLMFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEE 598
            SVRVEI+K KL+LMFEL R+P +EEI  ++GIS ERYHEVMR S+ +ISLHARH+ TQEE
Sbjct: 361  SVRVEIRKAKLELMFELKRLPTDEEIVGRVGISQERYHEVMRVSKPIISLHARHSVTQEE 420

Query: 597  FINGITDFD---GDKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAG 427
            FINGITD D   GD+R QP             LKPKENLVIRQRYGLDGKGDRTLGEIAG
Sbjct: 421  FINGITDVDGVEGDRRKQPALLRLALDDVLDSLKPKENLVIRQRYGLDGKGDRTLGEIAG 480

Query: 426  NLNISREMVRKHEVKALMKLKHPTRVDYLRRHIF 325
            NLNISREMVRK+EVKALMKLKH  RVDYLRR++F
Sbjct: 481  NLNISREMVRKYEVKALMKLKHRARVDYLRRYVF 514


>ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Fragaria vesca subsp.
            vesca]
          Length = 520

 Score =  502 bits (1292), Expect = e-139
 Identities = 262/391 (67%), Positives = 306/391 (78%), Gaps = 5/391 (1%)
 Frame = -1

Query: 1485 RRYRKKAGE-GNKEDGREVNDFVVRNPEKKAKRLNLANRIASR-RKXXXXXESVSSQGYK 1312
            R+ RKK  E  +K + R  +D VVR+  KKAKRL+L  R+A +  K      SV  +   
Sbjct: 129  RKRRKKISEVDDKVEKRTSDDIVVRSVTKKAKRLSLDKRVALKWNKDEKVAASVVRKRKD 188

Query: 1311 DSVEQRNVNRLIREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKDML 1132
               E   +  L+REYS +TD VS+DWKKM+IPPVL +SEH WLFKLMQPMK LLE K++L
Sbjct: 189  KRSENEMMEELVREYSASTDLVSLDWKKMRIPPVLSSSEHTWLFKLMQPMKGLLEVKEIL 248

Query: 1131 HKDIGKEPTSNELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFANG 952
             KD+G+EP   ELA A NM+ V++++HL VGRAARNKLIKHNLRLVLF INKYFQ+FANG
Sbjct: 249  QKDLGREPNKGELAEATNMTVVQVKRHLEVGRAARNKLIKHNLRLVLFVINKYFQDFANG 308

Query: 951  AKFQDLCQAGAKGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLESV 772
             KFQDLCQAG KGLI AIDRFEP+R+ +LSTYGLFWIRHAI+RSMTLSSFTRVS+GLESV
Sbjct: 309  PKFQDLCQAGVKGLITAIDRFEPQRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESV 368

Query: 771  RVEIQKTKLQLMFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEEFI 592
            R EIQK KL+++ +L R+P E+EI EK+GIS ERYHEVMRAS+ V SL++RH+ TQEEFI
Sbjct: 369  RAEIQKAKLEMLVQLKRMPTEDEIIEKVGISPERYHEVMRASKPVFSLNSRHSVTQEEFI 428

Query: 591  NGITD---FDGDKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAGNL 421
            NGITD    DGD R +P             LKPKE+LVIRQRYGLDGKGDRTLGEIAGNL
Sbjct: 429  NGITDVDGVDGDNRRKPALLRLAIDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNL 488

Query: 420  NISREMVRKHEVKALMKLKHPTRVDYLRRHI 328
            NISREMVRKHEVKALMKLKHP RVDYLRR+I
Sbjct: 489  NISREMVRKHEVKALMKLKHPARVDYLRRYI 519


>ref|XP_006376620.1| RNA polymerase sigma subunit SigE family protein [Populus
            trichocarpa] gi|550326141|gb|ERP54417.1| RNA polymerase
            sigma subunit SigE family protein [Populus trichocarpa]
          Length = 512

 Score =  495 bits (1274), Expect = e-137
 Identities = 256/387 (66%), Positives = 297/387 (76%), Gaps = 1/387 (0%)
 Frame = -1

Query: 1485 RRYRKKAGEGNKEDGREVNDFVVRNPEKKAKRLNLANRIASRRKXXXXXESVSSQGYKDS 1306
            R+ ++K  EG+KE        +VRN  KKAKRL+L  RI+ R K      S + +     
Sbjct: 125  RQRKRKISEGDKETEDRTGKIIVRNRAKKAKRLSLEKRISLRIKNEEKLVSSAGKRKDRK 184

Query: 1305 VEQRNVNRLIREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKDMLHK 1126
             E   ++ L+REYS +TD VS+DWKKMKIPPVL +SEH WLFKLMQPMKALL+ K+ L +
Sbjct: 185  NENEKIDDLVREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQVKEHLQE 244

Query: 1125 DIGKEPTSNELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFANGAK 946
            ++G EPT  ELA A NM  +++RK + VGRAARNKLIKHNLRLVLF I KYFQ+FANG K
Sbjct: 245  NLGGEPTDVELAKATNMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQDFANGTK 304

Query: 945  FQDLCQAGAKGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLESVRV 766
            FQD CQAG KGLI AIDRFEPKR+ +LSTYGLFWIRHAI+RSMTLSSFTRVS+GLES+R 
Sbjct: 305  FQDFCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESIRS 364

Query: 765  EIQKTKLQLMFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEEFING 586
            EIQK KL+L F+L R P E+EI EK+ IS ERYHEV RAS+ V+SLH+RH TTQEEFI G
Sbjct: 365  EIQKAKLELWFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTTQEEFIGG 424

Query: 585  ITDFD-GDKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAGNLNISR 409
            I D D GD R Q              LKPKE+LV+RQRYGLDGKGDRTLGEIAGNLNISR
Sbjct: 425  IADVDGGDDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGEIAGNLNISR 484

Query: 408  EMVRKHEVKALMKLKHPTRVDYLRRHI 328
            EMVRKHEVKALMKLKHPTRVDYLRR++
Sbjct: 485  EMVRKHEVKALMKLKHPTRVDYLRRYV 511


>ref|XP_006593758.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X3 [Glycine max]
          Length = 488

 Score =  489 bits (1259), Expect = e-135
 Identities = 258/388 (66%), Positives = 304/388 (78%), Gaps = 3/388 (0%)
 Frame = -1

Query: 1482 RYRKKAGEGNKEDGREVNDFVVRNPEKKAKRLNLANRIASRRKXXXXXESVSSQGYKDSV 1303
            R RKK  E  ++DG    D VVRN  KKAKRL+L  RIA +          + +      
Sbjct: 104  RRRKKVSE-ERDDGN--CDNVVRNQNKKAKRLSLDKRIALKNNAKEEVIDQTQKKRNVKN 160

Query: 1302 EQRNVNRLIREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKDMLHKD 1123
              +N++ LIR+YS +TD VSMDWKKMKIPPVLP+SEHAWLFKLMQPMKALL++K+ L K+
Sbjct: 161  RVQNIDVLIRDYSASTDLVSMDWKKMKIPPVLPSSEHAWLFKLMQPMKALLQAKEDL-KE 219

Query: 1122 IGKEPTSNELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFANGAKF 943
            + KE T  ELA A NMS +++RK + VGRAARNKLIKHNLRLVLF INKYFQ+FA+G +F
Sbjct: 220  VDKEITGGELADATNMSIIQVRKAIEVGRAARNKLIKHNLRLVLFVINKYFQDFASGPRF 279

Query: 942  QDLCQAGAKGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLESVRVE 763
            QDLCQAG KGLI AIDRFEPKR+ QLSTY LFWIRH+I+RS+TLSSFTRV +GLE VRV+
Sbjct: 280  QDLCQAGVKGLITAIDRFEPKRRLQLSTYSLFWIRHSIVRSITLSSFTRVPFGLERVRVD 339

Query: 762  IQKTKLQLMFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEEFINGI 583
            IQ+TKL+L FEL R P EEE+ E++GISLERYHEVM+AS+ ++SLH+RH TTQEE+INGI
Sbjct: 340  IQRTKLKLTFELQRSPTEEELVERIGISLERYHEVMKASKPILSLHSRHITTQEEYINGI 399

Query: 582  TDFD---GDKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAGNLNIS 412
            TD D   GD R Q              LKPKE+LVIRQRYGLDGKGDRTLGEIAGNLNIS
Sbjct: 400  TDVDGVNGDNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNIS 459

Query: 411  REMVRKHEVKALMKLKHPTRVDYLRRHI 328
            RE+VRKHEVKALMKLKHP R+DYLRR++
Sbjct: 460  REIVRKHEVKALMKLKHPARLDYLRRYV 487


>ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X1 [Glycine max]
            gi|571496981|ref|XP_006593757.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Glycine max]
          Length = 512

 Score =  489 bits (1259), Expect = e-135
 Identities = 258/388 (66%), Positives = 304/388 (78%), Gaps = 3/388 (0%)
 Frame = -1

Query: 1482 RYRKKAGEGNKEDGREVNDFVVRNPEKKAKRLNLANRIASRRKXXXXXESVSSQGYKDSV 1303
            R RKK  E  ++DG    D VVRN  KKAKRL+L  RIA +          + +      
Sbjct: 128  RRRKKVSE-ERDDGN--CDNVVRNQNKKAKRLSLDKRIALKNNAKEEVIDQTQKKRNVKN 184

Query: 1302 EQRNVNRLIREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKDMLHKD 1123
              +N++ LIR+YS +TD VSMDWKKMKIPPVLP+SEHAWLFKLMQPMKALL++K+ L K+
Sbjct: 185  RVQNIDVLIRDYSASTDLVSMDWKKMKIPPVLPSSEHAWLFKLMQPMKALLQAKEDL-KE 243

Query: 1122 IGKEPTSNELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFANGAKF 943
            + KE T  ELA A NMS +++RK + VGRAARNKLIKHNLRLVLF INKYFQ+FA+G +F
Sbjct: 244  VDKEITGGELADATNMSIIQVRKAIEVGRAARNKLIKHNLRLVLFVINKYFQDFASGPRF 303

Query: 942  QDLCQAGAKGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLESVRVE 763
            QDLCQAG KGLI AIDRFEPKR+ QLSTY LFWIRH+I+RS+TLSSFTRV +GLE VRV+
Sbjct: 304  QDLCQAGVKGLITAIDRFEPKRRLQLSTYSLFWIRHSIVRSITLSSFTRVPFGLERVRVD 363

Query: 762  IQKTKLQLMFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEEFINGI 583
            IQ+TKL+L FEL R P EEE+ E++GISLERYHEVM+AS+ ++SLH+RH TTQEE+INGI
Sbjct: 364  IQRTKLKLTFELQRSPTEEELVERIGISLERYHEVMKASKPILSLHSRHITTQEEYINGI 423

Query: 582  TDFD---GDKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAGNLNIS 412
            TD D   GD R Q              LKPKE+LVIRQRYGLDGKGDRTLGEIAGNLNIS
Sbjct: 424  TDVDGVNGDNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNIS 483

Query: 411  REMVRKHEVKALMKLKHPTRVDYLRRHI 328
            RE+VRKHEVKALMKLKHP R+DYLRR++
Sbjct: 484  REIVRKHEVKALMKLKHPARLDYLRRYV 511


>ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223547495|gb|EEF48990.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 501

 Score =  488 bits (1257), Expect = e-135
 Identities = 248/387 (64%), Positives = 297/387 (76%), Gaps = 1/387 (0%)
 Frame = -1

Query: 1485 RRYRKKAGEGNKEDGREVNDFVVRNPEKKAKRLNLANRIASRRKXXXXXESVSSQGYKDS 1306
            R+ ++K GEG+++     +  +VRN  KK KRL+L  RIA ++           +     
Sbjct: 114  RQRKRKTGEGDEKAENRTSRTIVRNRAKKTKRLSLDKRIALKKNEEEEVVGPIRKKKDSK 173

Query: 1305 VEQRNVNRLIREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKDMLHK 1126
             +   +  L+R YS +T+ VS+DW+KMKIPPVLP++EHAWLFKLMQPMK LL  K  L K
Sbjct: 174  DDNEKIEELVRTYSASTNLVSLDWRKMKIPPVLPSTEHAWLFKLMQPMKTLLPVKADLQK 233

Query: 1125 DIGKEPTSNELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFANGAK 946
            ++G++PT  ELA A NM+  ++RK L VGRAARNKLIKHNLRLV+F +NKYFQ+FANG +
Sbjct: 234  NLGRDPTDGELAEATNMNVEKVRKQLEVGRAARNKLIKHNLRLVMFVMNKYFQDFANGPR 293

Query: 945  FQDLCQAGAKGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLESVRV 766
            FQDLCQAG KGLI AIDRFEP+R+ QLSTY LFWIRHAI+RSMTLSSFT+VS+GLESVR 
Sbjct: 294  FQDLCQAGVKGLITAIDRFEPQRRFQLSTYSLFWIRHAIIRSMTLSSFTKVSFGLESVRT 353

Query: 765  EIQKTKLQLMFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEEFING 586
            EIQK KL+L+ EL R P EEEI E++GIS ERYHEV+RA++  +SLHARH  TQEEFING
Sbjct: 354  EIQKAKLELLIELQRRPTEEEIIERVGISAERYHEVIRAAKPALSLHARHAVTQEEFING 413

Query: 585  ITDFD-GDKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAGNLNISR 409
            ITD D GD R QP             LKPKE+LVIRQRYGLDGKGDRTLGEIAGNLNISR
Sbjct: 414  ITDIDGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISR 473

Query: 408  EMVRKHEVKALMKLKHPTRVDYLRRHI 328
            EMVRK+EVKALMKLKHP RVDYLRR++
Sbjct: 474  EMVRKYEVKALMKLKHPARVDYLRRYV 500


>dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila]
          Length = 511

 Score =  484 bits (1246), Expect = e-134
 Identities = 251/392 (64%), Positives = 299/392 (76%), Gaps = 5/392 (1%)
 Frame = -1

Query: 1488 RRRYRKKAGEGNKEDGREVNDFVVRNPEKKAKRLNLANRIASRRKXXXXXESVSSQGY-- 1315
            RRR RK+ GE  K         VVRN   K KRL+L  RIA +R         S+Q    
Sbjct: 127  RRRRRKEGGEEKK--------VVVRNNGMKEKRLSLDKRIALKRNIQEKPLVPSAQKKVT 178

Query: 1314 KDSVEQRNVNRLIREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKDM 1135
            K   E+  + RL+R+YS + D VS+DWKKMKIPPVLP++EHAWLFKLMQPMKALL+ KD 
Sbjct: 179  KKQQEEEKIERLVRDYSASHDIVSLDWKKMKIPPVLPSTEHAWLFKLMQPMKALLQVKDE 238

Query: 1134 LHKDIGKEPTSNELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFAN 955
            L K +G+EP   E+A  +NMS+ E+++ + +GRAARNKLIKHNLRLVLF +NKYFQ+F N
Sbjct: 239  LQKSLGREPRETEIAGEINMSAAEVKRKIEIGRAARNKLIKHNLRLVLFVMNKYFQDFTN 298

Query: 954  GAKFQDLCQAGAKGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLES 775
            G KFQDLCQAG +GLI AIDRFEPKRK +LSTYGLFWIRHAI+RSMT S+FTRV +GLES
Sbjct: 299  GPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLES 358

Query: 774  VRVEIQKTKLQLMFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEEF 595
            VRVEI KTK++L+FEL R+P E+E+ E++ IS ERY EV+RA++ V SL+++H+ TQEEF
Sbjct: 359  VRVEIYKTKMELLFELGRLPTEDEVVERLKISPERYREVLRAAKPVFSLNSKHSVTQEEF 418

Query: 594  INGITDFDG---DKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAGN 424
            INGITD DG   D R QP             LKPKE+LVIRQRYGLDGKGDRTLGEIAGN
Sbjct: 419  INGITDVDGVGADNRRQPAILRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGN 478

Query: 423  LNISREMVRKHEVKALMKLKHPTRVDYLRRHI 328
            LNISREMVRKHEVKALMKLKH  RVDYLR++I
Sbjct: 479  LNISREMVRKHEVKALMKLKHQARVDYLRQYI 510


>ref|XP_004234180.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform 2 [Solanum
            lycopersicum]
          Length = 487

 Score =  482 bits (1241), Expect = e-133
 Identities = 252/391 (64%), Positives = 292/391 (74%), Gaps = 3/391 (0%)
 Frame = -1

Query: 1488 RRRYRKKAGEGNKEDGREVNDFVVRNPEKKAKRLNLANRIASRRKXXXXXESVSSQGYKD 1309
            R R RK+  E ++E  +EV D VV+N  KK+KRLNL  RIA                   
Sbjct: 125  RPRTRKRIVESDEEAKKEVVDNVVKNRRKKSKRLNLDQRIA------------------- 165

Query: 1308 SVEQRNVNRLIREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKDMLH 1129
                     L++    ATD  S+DWKKMKIPPVLP+SEH WLFKLMQPMKA+L+ K+ L 
Sbjct: 166  ---------LLKNKEGATDLASLDWKKMKIPPVLPSSEHTWLFKLMQPMKAILQVKENLQ 216

Query: 1128 KDIGKEPTSNELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFANGA 949
             D+G+EPT  E+A A NM + ELRK L  GRAARNKLIKHNLRLVLF +NKYFQ+FAN +
Sbjct: 217  NDLGREPTDGEVAEATNMDASELRKKLEAGRAARNKLIKHNLRLVLFVMNKYFQDFANAS 276

Query: 948  KFQDLCQAGAKGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLESVR 769
            +FQDLCQAG KGLI AIDRFEP RK +LSTYGLFWIRHAI+R MT SSFT+V +GLES+R
Sbjct: 277  RFQDLCQAGVKGLITAIDRFEPNRKFRLSTYGLFWIRHAIIRYMTTSSFTKVPFGLESIR 336

Query: 768  VEIQKTKLQLMFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEEFIN 589
            VEIQK KL+L+FEL RIP ++EI +++G S ERYHEVM+ S+ + SLHAR+ TTQEE IN
Sbjct: 337  VEIQKAKLELLFELQRIPTDDEIIKRVGFSPERYHEVMKVSKPIFSLHARNKTTQEELIN 396

Query: 588  GITD---FDGDKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAGNLN 418
            GITD    DGDKR QP             LKPKE+LVIRQRYGLDGKGDRTLGEIAGNLN
Sbjct: 397  GITDVDGVDGDKRKQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLN 456

Query: 417  ISREMVRKHEVKALMKLKHPTRVDYLRRHIF 325
            ISREMVRKHEVKALMKLKHPTRVDY+RR+IF
Sbjct: 457  ISREMVRKHEVKALMKLKHPTRVDYVRRYIF 487


>ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 514

 Score =  480 bits (1235), Expect = e-133
 Identities = 247/390 (63%), Positives = 301/390 (77%), Gaps = 8/390 (2%)
 Frame = -1

Query: 1473 KKAGEGNKEDGREVNDFVVRNPEKKAKRLNLANRIASRRKXXXXXESV-----SSQGYKD 1309
            K+  + +K+      D +VRN  K+ KRL+L  RIA + K      ++      ++   D
Sbjct: 124  KRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKNEAD 183

Query: 1308 SVEQRNVNRLIREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKDMLH 1129
             ++   ++RL+R+YS +TD VS+DWKKMKIPPVLP+SEH  LFKL+QPMKAL+E ++ L 
Sbjct: 184  EIDDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQ 243

Query: 1128 KDIGKEPTSNELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFANGA 949
            K +G+EPT  ELA A NM+ +++R+ L VGRAARNKLIKHNLRLVLF INKYF++FA+G 
Sbjct: 244  KGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGP 303

Query: 948  KFQDLCQAGAKGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLESVR 769
            KFQDLCQAG KGLI AIDRFEPKRK +LSTY LFWIRHAI+RSMTLSSFTRVS+GL+SVR
Sbjct: 304  KFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVR 363

Query: 768  VEIQKTKLQLMFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEEFIN 589
            VEIQ+ KL+L+ EL+R+P E EI  K+GIS ERY EVMRA++ V SLH+RH+TT EE IN
Sbjct: 364  VEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEELIN 423

Query: 588  GITDFD---GDKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAGNLN 418
            GITD +   GD R QP             LKPKE+LVIRQRYGLDGKG+RTLGEIAGNLN
Sbjct: 424  GITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLN 483

Query: 417  ISREMVRKHEVKALMKLKHPTRVDYLRRHI 328
            ISREMVRKHEVKALMKLKHP RVDYLRR++
Sbjct: 484  ISREMVRKHEVKALMKLKHPARVDYLRRYL 513


>ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citrus clementina]
            gi|567858878|ref|XP_006422122.1| hypothetical protein
            CICLE_v10004760mg [Citrus clementina]
            gi|568874930|ref|XP_006490565.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X1 [Citrus
            sinensis] gi|568874932|ref|XP_006490566.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X2 [Citrus
            sinensis] gi|568874934|ref|XP_006490567.1| PREDICTED: RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like isoform X3 [Citrus
            sinensis] gi|557523994|gb|ESR35361.1| hypothetical
            protein CICLE_v10004760mg [Citrus clementina]
            gi|557523995|gb|ESR35362.1| hypothetical protein
            CICLE_v10004760mg [Citrus clementina]
          Length = 513

 Score =  479 bits (1234), Expect = e-132
 Identities = 247/389 (63%), Positives = 295/389 (75%), Gaps = 3/389 (0%)
 Frame = -1

Query: 1485 RRYRKKAGEGNKEDGREVNDFVVRNPEKKAKRLNLANRIASRRKXXXXXESVSSQGYKDS 1306
            R+ RK+ GE  K+        VVRN  K+ KRL+L  RI   RK         ++     
Sbjct: 125  RQRRKRIGEVEKKSDDVSGKPVVRNQVKRPKRLSLDKRI-ELRKNEDEKVVTKTRKTDSK 183

Query: 1305 VEQRNVNRLIREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKDMLHK 1126
             E   + +L+REYS +TD VS+DWKKMKIPPVL ++EH WLFKLMQPMK  ++ K+ L K
Sbjct: 184  DEHEKIEKLVREYSYSTDLVSLDWKKMKIPPVLSSTEHTWLFKLMQPMKVFVQVKEQLQK 243

Query: 1125 DIGKEPTSNELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFANGAK 946
            D+G+EPT  ELA A NMS+ +++K L VGRAARNKLIKHNLRLVLF I KYFQ+FANG +
Sbjct: 244  DLGREPTDVELAEATNMSAAQVKKCLEVGRAARNKLIKHNLRLVLFVIKKYFQDFANGPR 303

Query: 945  FQDLCQAGAKGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLESVRV 766
            FQDLCQAG KGLI AIDRFEPKR+ +LSTYGLFWIRHAI+RSMT+SSFTRV +GLESVR 
Sbjct: 304  FQDLCQAGVKGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTVSSFTRVPFGLESVRG 363

Query: 765  EIQKTKLQLMFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEEFING 586
            EIQ+ KL+L+FEL R+P +EEI + + IS ERY EVM+AS+ ++SLH+RH  TQEEFING
Sbjct: 364  EIQRAKLELLFELKRVPTDEEIIQGVNISPERYREVMKASKPILSLHSRHGVTQEEFING 423

Query: 585  ITDFDG---DKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAGNLNI 415
            ITD DG   + + QP             LKPKE+LVIRQR+GLDGKGDRTLGEIAGNLNI
Sbjct: 424  ITDVDGVENENQRQPALLRLALDDVLDSLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNI 483

Query: 414  SREMVRKHEVKALMKLKHPTRVDYLRRHI 328
            SREMVRKHEVK LMKLKHPTRVDYLR+H+
Sbjct: 484  SREMVRKHEVKGLMKLKHPTRVDYLRQHM 512


>ref|NP_001254001.1| RNA polymerase sigma factor rpoD-like [Glycine max]
            gi|382365028|dbj|BAM05477.1| sigma-like factor 5A
            [Glycine max]
          Length = 512

 Score =  478 bits (1229), Expect = e-132
 Identities = 250/380 (65%), Positives = 296/380 (77%), Gaps = 3/380 (0%)
 Frame = -1

Query: 1458 GNKEDGREVNDFVVRNPEKKAKRLNLANRIASRRKXXXXXESVSSQGYKDSVEQRNVNRL 1279
            GN+ D     D VVRN  KKAKRL+L  RI  +          + +        +N++ L
Sbjct: 134  GNEHDDENC-DIVVRNQNKKAKRLSLDKRITLKNNAKEEVIDQTQKIRNVKNRVQNIDVL 192

Query: 1278 IREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKDMLHKDIGKEPTSN 1099
            IR+YS +TD VSMDWKKMKIP VLP+SEHAWLFKLMQPMKALL++K+ L + +GKE T  
Sbjct: 193  IRDYSASTDLVSMDWKKMKIPAVLPSSEHAWLFKLMQPMKALLQAKEDL-QSVGKEITDG 251

Query: 1098 ELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFANGAKFQDLCQAGA 919
            ELA A NMS +++RK + VGRAARNKLIKHNLRLVLF I+KYFQ+FA+G +FQDLCQAG 
Sbjct: 252  ELADATNMSIIQVRKAIEVGRAARNKLIKHNLRLVLFVISKYFQDFASGRRFQDLCQAGV 311

Query: 918  KGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLESVRVEIQKTKLQL 739
            KGLI AIDRFEPKR+ QLSTY LFWIRH+I+RS+TLSSFTRV +GLE VRV+IQ+TKL+L
Sbjct: 312  KGLITAIDRFEPKRRLQLSTYSLFWIRHSIVRSITLSSFTRVPFGLERVRVDIQRTKLKL 371

Query: 738  MFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEEFINGITDFD---G 568
             FEL R P EEE+ E++GIS ERY+EVM+AS+ ++SLH+RH TTQEE+INGITD D   G
Sbjct: 372  TFELQRSPTEEELVERIGISPERYYEVMKASKPILSLHSRHITTQEEYINGITDVDGVNG 431

Query: 567  DKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHE 388
            D R Q              LKPKE+LVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHE
Sbjct: 432  DNRRQLAVLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHE 491

Query: 387  VKALMKLKHPTRVDYLRRHI 328
            VKALMKLKHP R+DYLRR++
Sbjct: 492  VKALMKLKHPARLDYLRRYV 511


>ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 515

 Score =  477 bits (1227), Expect = e-132
 Identities = 250/391 (63%), Positives = 302/391 (77%), Gaps = 9/391 (2%)
 Frame = -1

Query: 1473 KKAGEGNKEDGREVNDFVVRNPEKKAKRLNLANRIA--SRRKXXXXXESVSSQGYKDSVE 1300
            K+  + +K+      D +VRN  K+ KRL+L  RIA  ++RK     E  +    +   E
Sbjct: 124  KRGQKRSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKRKAKRNKEGKAVPSLRKQKE 183

Query: 1299 QRN----VNRLIREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKDML 1132
             +N    ++RL+R+YS +TD VS+DWKKMKIPPVLP+SEH  LFKL+QPMKAL+E ++ L
Sbjct: 184  TKNEDDEIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEEL 243

Query: 1131 HKDIGKEPTSNELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFANG 952
             K +G+EPT  ELA A NM+ +++R+ L VGRAARNKLIKHNLRLVLF INKYF++FA+G
Sbjct: 244  QKGLGREPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASG 303

Query: 951  AKFQDLCQAGAKGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLESV 772
             KFQDLCQAG KGLI AIDRFEPKRK +LSTY LFWIRHAI+RSMTLSSFTRVS+GL+SV
Sbjct: 304  PKFQDLCQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSV 363

Query: 771  RVEIQKTKLQLMFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEEFI 592
            RVEIQ+ KL+L+ EL+R+P E EI  K+GIS ERY EVMRA++ V SLH+RH+TT EE I
Sbjct: 364  RVEIQRAKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEELI 423

Query: 591  NGITDFD---GDKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAGNL 421
            NGITD +   GD R QP             LKPKE+LVIRQRYGLDGKG+RTLGEIAGNL
Sbjct: 424  NGITDVEGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNL 483

Query: 420  NISREMVRKHEVKALMKLKHPTRVDYLRRHI 328
            NISREMVRKHEVKALMKLKHP RVDYLRR++
Sbjct: 484  NISREMVRKHEVKALMKLKHPARVDYLRRYL 514


>ref|NP_197800.1| RNA polymerase sigma factor 5 [Arabidopsis thaliana]
            gi|75267675|sp|Q9ZNX9.1|SIGE_ARATH RecName: Full=RNA
            polymerase sigma factor sigE,
            chloroplastic/mitochondrial; Short=Sigma factor E;
            Short=Sigma-E; AltName: Full=RNA polymerase sigma factor
            sig5; Short=Atsig5; Short=Sigma factor 5; Flags:
            Precursor gi|4033838|emb|CAA77213.1| sigma-like factor
            [Arabidopsis thaliana] gi|4972299|dbj|BAA78109.1| RNA
            polymerase sigma subunit SigE [Arabidopsis thaliana]
            gi|10178160|dbj|BAB11572.1| sigma-like factor
            [Arabidopsis thaliana] gi|222423237|dbj|BAH19595.1|
            AT5G24120 [Arabidopsis thaliana]
            gi|332005876|gb|AED93259.1| RNA polymerase sigma factor 5
            [Arabidopsis thaliana]
          Length = 517

 Score =  473 bits (1216), Expect = e-130
 Identities = 246/392 (62%), Positives = 297/392 (75%), Gaps = 5/392 (1%)
 Frame = -1

Query: 1488 RRRYRKKAGEGNKEDGREVNDFVVRNPEKKAKRLNLANRIASRR--KXXXXXESVSSQGY 1315
            RRR RK++GE  K         VVRN  KK KR++L  RIA +R  +      SV  +  
Sbjct: 133  RRRKRKESGEEKK--------VVVRNNVKKEKRMSLDKRIALKRNVQEKPVVASVDKKVT 184

Query: 1314 KDSVEQRNVNRLIREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKDM 1135
            K   E+  + RL+R+YS + D VS+DWKKMKIPPVL ++EHAWLFKLMQPMKALLE KD+
Sbjct: 185  KRQQEEEKIERLVRDYSASNDIVSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLEVKDV 244

Query: 1134 LHKDIGKEPTSNELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFAN 955
            L K +G+EP   E+A  +NM++ E++K + +GRAARNKLIKHNLRLVLF +NKYF EF N
Sbjct: 245  LQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFHEFTN 304

Query: 954  GAKFQDLCQAGAKGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLES 775
            G KFQDLCQAG +GLI AIDRFEPKRK +LSTYGLFWIRHAI+RSMT S+FTRV +GLES
Sbjct: 305  GPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLES 364

Query: 774  VRVEIQKTKLQLMFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEEF 595
            VRVEI K K +L FE+ R P E+E+ E++ I+ ERY EV+RA++ V+SL+++H+ TQEEF
Sbjct: 365  VRVEIYKAKTELWFEMGRPPTEDEVVERLKITPERYREVLRAAKPVLSLNSKHSVTQEEF 424

Query: 594  INGITDFDG---DKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAGN 424
            INGITD DG   +   QP             LKPKE+LVIRQRYGLDGKGDRTLGEIAGN
Sbjct: 425  INGITDVDGVGANNSRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGN 484

Query: 423  LNISREMVRKHEVKALMKLKHPTRVDYLRRHI 328
            LNISREMVRKHEVKALMKLKH  RVDYLR++I
Sbjct: 485  LNISREMVRKHEVKALMKLKHQARVDYLRQYI 516


>ref|XP_006287402.1| hypothetical protein CARUB_v10000608mg, partial [Capsella rubella]
            gi|482556108|gb|EOA20300.1| hypothetical protein
            CARUB_v10000608mg, partial [Capsella rubella]
          Length = 557

 Score =  473 bits (1216), Expect = e-130
 Identities = 247/391 (63%), Positives = 296/391 (75%), Gaps = 5/391 (1%)
 Frame = -1

Query: 1485 RRYRKKAGEGNKEDGREVNDFVVRNPEKKAKRLNLANRIASRRKXXXXXESVSSQGY--K 1312
            RR RK+ GE  K         VVRN  KK KRL+L  RIA +R         S++    K
Sbjct: 174  RRKRKQRGEEKK--------VVVRNNVKKDKRLSLDKRIALKRNCQEKPFVASAEKKVTK 225

Query: 1311 DSVEQRNVNRLIREYSVATDHVSMDWKKMKIPPVLPASEHAWLFKLMQPMKALLESKDML 1132
               E+  ++ L+R+YSV+ D +S+DWKKMKIPPVL ++EHAWLFKLMQPMKALLE KD L
Sbjct: 226  KQQEEEKIDMLVRDYSVSNDILSLDWKKMKIPPVLSSTEHAWLFKLMQPMKALLEVKDEL 285

Query: 1131 HKDIGKEPTSNELAAAVNMSSVELRKHLRVGRAARNKLIKHNLRLVLFAINKYFQEFANG 952
             K +G+EP   E+A  + M++ E++K + +GRAARNKLIKHNLRLVLF +NKYFQEF NG
Sbjct: 286  QKSLGREPREAEIAGEIKMTTGEVKKKIEIGRAARNKLIKHNLRLVLFVMNKYFQEFTNG 345

Query: 951  AKFQDLCQAGAKGLIVAIDRFEPKRKSQLSTYGLFWIRHAIMRSMTLSSFTRVSYGLESV 772
             KFQDLCQAG KGLI AIDRFEPKRK +LSTYGLFWIRHAI+RSMT S+FTRV +GLESV
Sbjct: 346  PKFQDLCQAGMKGLITAIDRFEPKRKFRLSTYGLFWIRHAIIRSMTTSNFTRVPFGLESV 405

Query: 771  RVEIQKTKLQLMFELNRIPKEEEIAEKMGISLERYHEVMRASQGVISLHARHNTTQEEFI 592
            RVEI K K++L+FEL R+P E+E+ +++ I+ ERY EV+RA++ V SL+++H  TQEEFI
Sbjct: 406  RVEIYKAKMELLFELGRLPTEDEVIKRLKITPERYREVLRAAKPVFSLNSKHAVTQEEFI 465

Query: 591  NGITDFDG---DKRSQPXXXXXXXXXXXXXLKPKENLVIRQRYGLDGKGDRTLGEIAGNL 421
            NGITD DG   D R QP             LKPKE+LVIRQRYGLDGKGDRTLGEIAGNL
Sbjct: 466  NGITDVDGVGADNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNL 525

Query: 420  NISREMVRKHEVKALMKLKHPTRVDYLRRHI 328
            NISREMVRKHEVKALMKLKH  RVDYLR++I
Sbjct: 526  NISREMVRKHEVKALMKLKHQARVDYLRQYI 556