BLASTX nr result
ID: Papaver27_contig00011832
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver27_contig00011832
(876 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB82754.1| retrofit [Oryza longistaminata] 54 2e-19
emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group] 58 2e-18
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p... 52 3e-18
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 54 3e-18
ref|XP_003560110.1| PREDICTED: uncharacterized protein LOC100846... 61 4e-18
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group] 50 1e-17
emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera] 54 1e-17
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-... 57 1e-17
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 57 1e-17
ref|XP_002270154.1| PREDICTED: uncharacterized protein LOC100264... 57 2e-17
gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subc... 57 2e-17
emb|CAN65555.1| hypothetical protein VITISV_009833 [Vitis vinifera] 52 4e-17
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g... 53 2e-16
emb|CAE04319.3| OSJNBb0016D16.10 [Oryza sativa Japonica Group] 48 3e-16
gb|ABA95366.1| retrotransposon protein, putative, Ty1-copia subc... 55 3e-16
emb|CAN75351.1| hypothetical protein VITISV_031045 [Vitis vinifera] 49 3e-16
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz... 53 4e-16
gb|EEC76475.1| hypothetical protein OsI_14210 [Oryza sativa Indi... 53 4e-16
gb|ABA95065.1| retrotransposon protein, putative, Ty1-copia subc... 54 1e-15
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group... 47 5e-15
>gb|AAB82754.1| retrofit [Oryza longistaminata]
Length = 1445
Score = 54.3 bits (129), Expect(3) = 2e-19
Identities = 44/110 (40%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Frame = +1
Query: 235 DDVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDM--LEAALALV 408
+D S G LQYLTLTR D++++V V Q +HAPT SH VKR + L +L
Sbjct: 1222 NDAIQYRSIVGALQYLTLTRPDIAYSVN-KVCQFLHAPTTSHWIAVKRILRYLNQCTSLG 1280
Query: 409 LHCQLVNLMLLPPILIQTHWARCHD----TSGCCVFLG----SWSFRKSP 534
LH + L WA D T G VFLG SWS RK P
Sbjct: 1281 LHIH-KSASTLVHGYSDADWAGSIDDRKSTGGFAVFLGSNLVSWSARKQP 1329
Score = 47.8 bits (112), Expect(3) = 2e-19
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = +2
Query: 59 HYFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPVAQGPRFSL 208
HYF+G+E S V+L+Q+KY LL++ M NC P STP++ + +L
Sbjct: 1164 HYFLGIEVTKVSNGVILTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTL 1213
Score = 40.8 bits (94), Expect(3) = 2e-19
Identities = 21/46 (45%), Positives = 32/46 (69%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKSLAVTSAKMLRILYLLEELPTYFSPSCQNTW 662
K+PT+SRSS +AEYK++A T+A+++ + LL+EL SP W
Sbjct: 1327 KQPTVSRSSTEAEYKAVANTTAELIWVQTLLKELGIE-SPKAAKIW 1371
>emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]
Length = 1825
Score = 57.8 bits (138), Expect(3) = 2e-18
Identities = 43/110 (39%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Frame = +1
Query: 235 DDVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDM--LEAALALV 408
+D ++ S G LQYLTLTR D+SF+V V Q +H+PT H VKR + L+ L
Sbjct: 1109 NDATNYRSIVGALQYLTLTRPDISFSVN-KVCQYLHSPTTVHWAAVKRILRYLQQTSGLG 1167
Query: 409 LHCQLVNLMLLPPILIQTHWARCHD----TSGCCVFLG----SWSFRKSP 534
L + + +L+ WA C D T G V+LG SWS RK P
Sbjct: 1168 LKIRKSSSLLVSG-FSDADWAGCLDDRRSTGGFAVYLGPNLVSWSARKQP 1216
Score = 43.9 bits (102), Expect(3) = 2e-18
Identities = 20/50 (40%), Positives = 30/50 (60%)
Frame = +2
Query: 59 HYFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPVAQGPRFSL 208
HYF+G+E +LLSQ+KY LL++ M C P STP++ + S+
Sbjct: 1051 HYFLGIEATKVCDGILLSQEKYVKDLLKRINMDKCKPVSTPLSPTEKLSI 1100
Score = 37.7 bits (86), Expect(3) = 2e-18
Identities = 17/34 (50%), Positives = 28/34 (82%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKSLAVTSAKMLRILYLLEEL 626
K+PT+SRSS +AEYK+LA +A+++ + LL+E+
Sbjct: 1214 KQPTVSRSSTEAEYKALANVTAEIMWVQTLLKEI 1247
>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa Japonica Group]
Length = 1448
Score = 52.4 bits (124), Expect(3) = 3e-18
Identities = 42/109 (38%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Frame = +1
Query: 235 DDVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDM--LEAALALV 408
+D + S G LQYLTLTR D++++V V Q +HAPT SH VKR + L +L
Sbjct: 1225 NDATQYRSIVGALQYLTLTRPDIAYSVN-KVCQFLHAPTTSHWIAVKRILRYLNQCTSLG 1283
Query: 409 LHCQLVNLMLLPPILIQTHWARCHD---TSGCCVFLG----SWSFRKSP 534
LH L+ D T G VFLG SWS RK P
Sbjct: 1284 LHVHKSASTLVHGYSDADGAGSIDDRKSTGGFAVFLGSNLVSWSARKQP 1332
Score = 47.0 bits (110), Expect(3) = 3e-18
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +2
Query: 59 HYFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPVAQGPRFSL 208
HYF+G+E S V+L+Q+KY +L++ M NC P STP++ + +L
Sbjct: 1167 HYFLGIEVTKVSNGVILTQEKYANDMLKRVNMSNCKPVSTPLSVSEKLTL 1216
Score = 39.7 bits (91), Expect(3) = 3e-18
Identities = 20/46 (43%), Positives = 32/46 (69%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKSLAVTSAKMLRILYLLEELPTYFSPSCQNTW 662
K+PT+SRSS +AEYK++A T+A+++ + +L+EL SP W
Sbjct: 1330 KQPTVSRSSTEAEYKAVANTTAELIWVQTVLKELGIE-SPKAAKIW 1374
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 53.5 bits (127), Expect(3) = 3e-18
Identities = 42/114 (36%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Frame = +1
Query: 235 DDVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDMLEAALALVLH 414
+D + S G LQYLTLTR D++++V V Q +HAPT H VKR L +
Sbjct: 1213 NDATQYRSIVGALQYLTLTRPDIAYSVN-KVCQFLHAPTTDHWTAVKR-----ILRYLNQ 1266
Query: 415 CQLVNLMLLPPILIQTH------WARCHD----TSGCCVFLG----SWSFRKSP 534
C + L + H WA D T G VFLG SWS RK P
Sbjct: 1267 CTSLGLNIHKSASTLVHGYSDADWAGSVDDRKSTGGFAVFLGSNLVSWSARKQP 1320
Score = 45.1 bits (105), Expect(3) = 3e-18
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +2
Query: 59 HYFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPVAQGPRFSL 208
HYF+G+E ++L+Q+KY LL++ M NC P STP++ + +L
Sbjct: 1155 HYFLGIEVTKVPNGIVLTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTL 1204
Score = 40.0 bits (92), Expect(3) = 3e-18
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKSLAVTSAKMLRILYLLEELPTYFSPSCQNTW 662
K+PT+SRSS +AEYK++A T+A+++ + LL EL SP W
Sbjct: 1318 KQPTVSRSSTEAEYKAVANTTAELIWVQTLLREL-GIDSPKAAKIW 1362
>ref|XP_003560110.1| PREDICTED: uncharacterized protein LOC100846463 [Brachypodium
distachyon]
Length = 989
Score = 61.2 bits (147), Expect(3) = 4e-18
Identities = 47/111 (42%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Frame = +1
Query: 232 LDDVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDM--LEAALAL 405
L+D S GGLQYLTLTR DLSFAV V Q + PT +H ++VKR + ++ ++
Sbjct: 762 LEDSFKYRSLIGGLQYLTLTRPDLSFAVN-KVCQYLSQPTTAHYEVVKRILRFVKGIVST 820
Query: 406 VLHCQLVNLMLLPPILIQTHWARCHD----TSGCCVFLG----SWSFRKSP 534
L Q + L I WA C D T G VFLG SWS RK P
Sbjct: 821 GLRFQRSSSTRL-GIFTDADWAGCSDDRRSTGGFAVFLGPNLVSWSSRKQP 870
Score = 39.7 bits (91), Expect(3) = 4e-18
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +2
Query: 62 YFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPVAQGPRFS 205
YF+G+E S ++L Q KY L LL +A M C P +TP++ + +
Sbjct: 706 YFLGIEAAYSFEGMVLMQHKYALDLLHRANMEQCRPVTTPMSTSDKLT 753
Score = 37.4 bits (85), Expect(3) = 4e-18
Identities = 20/39 (51%), Positives = 28/39 (71%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKSLAVTSAKMLRILYLLEELPTYFS 641
K+PT+SRSS +AEYK LA +A+ + I +L+EL Y S
Sbjct: 868 KQPTVSRSSTEAEYKVLANGTAEAIWIQSVLKELGVYQS 906
>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
Length = 1448
Score = 49.7 bits (117), Expect(3) = 1e-17
Identities = 41/114 (35%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Frame = +1
Query: 235 DDVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDMLEAALALVLH 414
+D + S G LQYLTLTR D++++V V Q +HAPT SH VKR L +
Sbjct: 1225 NDATQYRSIVGALQYLTLTRPDIAYSVN-KVCQFLHAPTTSHWIAVKR-----ILRYLNQ 1278
Query: 415 CQLVNLMLLPPILIQTHWARCHD----------TSGCCVFLG----SWSFRKSP 534
C L + H D T G VFLG SWS RK P
Sbjct: 1279 CTSPGLHVHKSASTLVHGYSDADGAGSIDDRKSTGGFAVFLGSNLVSWSARKQP 1332
Score = 47.8 bits (112), Expect(3) = 1e-17
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +2
Query: 59 HYFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPVAQGPRFSL 208
HYF+G+E S V+L+Q+KY +L++ M NC P STP++ + +L
Sbjct: 1167 HYFLGIEVTKVSNGVILTQEKYANDMLKRVNMSNCTPVSTPLSVSEKLTL 1216
Score = 39.7 bits (91), Expect(3) = 1e-17
Identities = 20/46 (43%), Positives = 32/46 (69%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKSLAVTSAKMLRILYLLEELPTYFSPSCQNTW 662
K+PT+SRSS +AEYK++A T+A+++ + +L+EL SP W
Sbjct: 1330 KQPTVSRSSTEAEYKAVANTTAELIWVQTVLKELGIE-SPKAAKIW 1374
>emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera]
Length = 1361
Score = 54.3 bits (129), Expect(3) = 1e-17
Identities = 43/112 (38%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Frame = +1
Query: 229 LLDDVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDML----EAA 396
L D + S AG LQYLT+TR DLSF+V + Q +HAPT H + +KR + A
Sbjct: 1120 LFSDPTLFRSLAGALQYLTITRPDLSFSVN-SIFQFMHAPTEDHFRALKRILRYVKGTAH 1178
Query: 397 LALVLHCQLVNLMLLPPILIQTHWARCHD----TSGCCVFLG----SWSFRK 528
L LH Q +L WA C D T+G +F G SWS +K
Sbjct: 1179 HGLQLHKQSTRDLL---GYSDADWAGCPDTRRSTTGYAIFFGANLISWSSKK 1227
Score = 45.1 bits (105), Expect(3) = 1e-17
Identities = 22/49 (44%), Positives = 29/49 (59%)
Frame = +2
Query: 59 HYFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPVAQGPRFS 205
HYF+GVE + + LSQ KY L LL++A M++ P STP G S
Sbjct: 1067 HYFLGVEVQANEKGLFLSQTKYALDLLQRASMIDAKPISTPFVVGQHLS 1115
Score = 37.7 bits (86), Expect(3) = 1e-17
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKSLAVTSAKMLRILYLLEEL 626
K+ T+SRSS +AEY+SLAV +A + I+ LL +L
Sbjct: 1227 KQSTVSRSSAEAEYRSLAVATADIAWIIQLLRDL 1260
>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group]
Length = 1621
Score = 56.6 bits (135), Expect(3) = 1e-17
Identities = 43/112 (38%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Frame = +1
Query: 235 DDVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDMLEAALALVLH 414
+D SH S G LQYLTLTR D++F+V V Q +HAPT H VKR L +
Sbjct: 952 EDASHYRSVVGALQYLTLTRPDIAFSVN-KVCQFLHAPTTVHWIAVKR-----ILRYLKQ 1005
Query: 415 CQLVNLML------LPPILIQTHWARCHD----TSGCCVFLG----SWSFRK 528
C + L + L WA C D T G +FLG SW+ RK
Sbjct: 1006 CTRLGLEIHKSGSTLVSGFSDADWAGCLDDRRSTGGFAIFLGSNLVSWNARK 1057
Score = 45.8 bits (107), Expect(3) = 1e-17
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +2
Query: 59 HYFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPVAQGPRFSL 208
HYF+G+E ++L+Q KY LL+K M++C PA+TP++ + SL
Sbjct: 894 HYFLGIEVSKVQNGIVLNQDKYANDLLKKVGMIDCKPANTPLSVSEKLSL 943
Score = 34.3 bits (77), Expect(3) = 1e-17
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKSLAVTSAKMLRILYLLEELPTYFSPSCQNTW 662
K+ T+SRSS ++EYK++A +A+++ + LL EL SP W
Sbjct: 1057 KQATVSRSSTESEYKAIANATAEIMWVQTLLAELEIK-SPKAAKIW 1101
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 56.6 bits (135), Expect(3) = 1e-17
Identities = 43/112 (38%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Frame = +1
Query: 235 DDVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDMLEAALALVLH 414
+D SH S G LQYLTLTR D++F+V V Q +HAPT H VKR L +
Sbjct: 1230 EDASHYRSVVGALQYLTLTRPDIAFSVN-KVCQFLHAPTTVHWIAVKR-----ILRYLKQ 1283
Query: 415 CQLVNLML------LPPILIQTHWARCHD----TSGCCVFLG----SWSFRK 528
C + L + L WA C D T G +FLG SW+ RK
Sbjct: 1284 CTRLGLEIHKSGSTLVSGFSDADWAGCLDDRRSTGGFAIFLGSNLVSWNARK 1335
Score = 45.8 bits (107), Expect(3) = 1e-17
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +2
Query: 59 HYFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPVAQGPRFSL 208
HYF+G+E ++L+Q KY LL+K M++C PA+TP++ + SL
Sbjct: 1172 HYFLGIEVSKVQNGIVLNQDKYANDLLKKVGMIDCKPANTPLSVSEKLSL 1221
Score = 34.3 bits (77), Expect(3) = 1e-17
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKSLAVTSAKMLRILYLLEELPTYFSPSCQNTW 662
K+ T+SRSS ++EYK++A +A+++ + LL EL SP W
Sbjct: 1335 KQATVSRSSTESEYKAIANATAEIMWVQTLLAELEIK-SPKAAKIW 1379
>ref|XP_002270154.1| PREDICTED: uncharacterized protein LOC100264911 [Vitis vinifera]
Length = 1946
Score = 56.6 bits (135), Expect(3) = 2e-17
Identities = 40/109 (36%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Frame = +1
Query: 226 VLLDDVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDMLEAALAL 405
VLL+D S+ G LQYLTLTR DLS++V Y Q +HAPT H ++V+R
Sbjct: 763 VLLEDPSYFRGLVGALQYLTLTRPDLSYSVN-YASQFMHAPTLVHLKMVRR--------- 812
Query: 406 VLHCQLVNLMLLPPILIQTHWARCHDT----SGCCVFLG----SWSFRK 528
++ I WA C T +G C FLG SW +K
Sbjct: 813 --------ILRYVKGTIDIDWAGCPTTRRSITGYCTFLGGNLISWCAKK 853
Score = 44.3 bits (103), Expect(3) = 2e-17
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +2
Query: 59 HYFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPV 184
HYF+G+E ++ + LSQ Y L +LE+A M++C P STP+
Sbjct: 711 HYFLGIEISQTADGLHLSQSHYALTILERANMVDCKPMSTPL 752
Score = 35.0 bits (79), Expect(3) = 2e-17
Identities = 16/34 (47%), Positives = 27/34 (79%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKSLAVTSAKMLRILYLLEEL 626
K+ TISRSS KAEY+++A T+A++ + ++L +L
Sbjct: 853 KQHTISRSSTKAEYRAMAHTAAELTWMSFILNDL 886
>gb|ABA98286.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1478
Score = 56.6 bits (135), Expect(3) = 2e-17
Identities = 43/112 (38%), Positives = 53/112 (47%), Gaps = 14/112 (12%)
Frame = +1
Query: 235 DDVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDMLEAALALVLH 414
+D SH S G LQYLTLTR D++F+V V Q +HAPT H VKR L +
Sbjct: 1223 EDASHYRSVVGALQYLTLTRPDIAFSVN-KVCQFLHAPTTVHWIAVKR-----ILRYLKQ 1276
Query: 415 CQLVNLML------LPPILIQTHWARCHD----TSGCCVFLG----SWSFRK 528
C + L + L WA C D T G +FLG SW+ RK
Sbjct: 1277 CTRLGLEIHKSGSTLVSGFSDADWAGCLDDRRSTGGFAIFLGSNLVSWNARK 1328
Score = 45.8 bits (107), Expect(3) = 2e-17
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +2
Query: 59 HYFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPVAQGPRFSL 208
HYF+G+E ++L+Q KY LL+K M++C PA+TP++ + SL
Sbjct: 1165 HYFLGIEVSKVQNGIVLNQDKYANDLLKKVGMIDCKPANTPLSVSEKLSL 1214
Score = 33.5 bits (75), Expect(3) = 2e-17
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKSLAVTSAKMLRILYLLEELPTYFSPSCQNTW 662
K+ T+SRSS ++EYK++A +A+++ + LL EL SP W
Sbjct: 1328 KQATVSRSSIESEYKAIANATAEIMWVQTLLAELEIK-SPKAAKIW 1372
>emb|CAN65555.1| hypothetical protein VITISV_009833 [Vitis vinifera]
Length = 325
Score = 52.4 bits (124), Expect(3) = 4e-17
Identities = 43/112 (38%), Positives = 54/112 (48%), Gaps = 12/112 (10%)
Frame = +1
Query: 229 LLDDVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDML----EAA 396
L D + S AG LQYLT+TR DLSF+V + Q +HAPT H +KR + A
Sbjct: 84 LFSDPTLFRSLAGALQYLTITRPDLSFSVN-SICQFMHAPTEDHFCALKRILRYVKGTAH 142
Query: 397 LALVLHCQLVNLMLLPPILIQTHWARCHD----TSGCCVFLG----SWSFRK 528
L LH Q +L WA C D T+G +F G SWS +K
Sbjct: 143 HGLQLHKQSTRDLL---GYSDADWAGCPDTRRSTTGYAIFFGANLISWSSKK 191
Score = 45.1 bits (105), Expect(3) = 4e-17
Identities = 22/49 (44%), Positives = 29/49 (59%)
Frame = +2
Query: 59 HYFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPVAQGPRFS 205
HYF+GVE + + LSQ KY L LL++A M++ P STP G S
Sbjct: 31 HYFLGVEVQANEKGLFLSQTKYALDLLQRASMIDAKPISTPFVVGQHLS 79
Score = 37.7 bits (86), Expect(3) = 4e-17
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKSLAVTSAKMLRILYLLEEL 626
K+ T+SRSS +AEY+SLAV +A + I+ LL +L
Sbjct: 191 KQSTVSRSSAEAEYRSLAVAAADIAWIIQLLRDL 224
>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
Japonica Group]
Length = 821
Score = 52.8 bits (125), Expect(3) = 2e-16
Identities = 42/108 (38%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Frame = +1
Query: 238 DVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDMLEAALAL---V 408
D + S G LQYLTLTR D+SF++ V Q +HAPT +H VKR + + +
Sbjct: 593 DSTQYRSVVGALQYLTLTRPDISFSIN-KVCQFLHAPTTTHWAAVKRILRYVKYTVDTGL 651
Query: 409 LHCQLVNLMLLPPILIQTHWARCHD----TSGCCVFLG----SWSFRK 528
C+ N LL WA D T G VFLG SWS RK
Sbjct: 652 KFCR--NPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARK 697
Score = 42.7 bits (99), Expect(3) = 2e-16
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +2
Query: 59 HYFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPVAQGPRFSL 208
HYF+G+E ++LSQ+KY LL + M C P STP++ + S+
Sbjct: 534 HYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSV 583
Score = 37.0 bits (84), Expect(3) = 2e-16
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKSLAVTSAKMLRILYLLEELPTYFSPSCQNTW 662
K+ T+SRSS +AEYK+LA +A+++ + LL+EL SP W
Sbjct: 697 KQATVSRSSTEAEYKALANATAEIMWVQTLLQELGVE-SPRAAKLW 741
>emb|CAE04319.3| OSJNBb0016D16.10 [Oryza sativa Japonica Group]
Length = 950
Score = 47.8 bits (112), Expect(3) = 3e-16
Identities = 39/112 (34%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Frame = +1
Query: 235 DDVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDMLEAALALVLH 414
+D + S G LQYLTLTR D++++V V Q +HAPT H VKR L +
Sbjct: 290 NDATQYRSIVGALQYLTLTRPDIAYSVN-KVCQFLHAPTTRHWTGVKR-----ILRYLNQ 343
Query: 415 CQLVNLMLLPPILIQTH------WARCHD----TSGCCVFLG----SWSFRK 528
C + L + H WA D T G +F+G SWS RK
Sbjct: 344 CTSLGLNIHKSASTLVHGYSNADWAGSIDDRKSTGGFAIFVGSNLVSWSARK 395
Score = 47.4 bits (111), Expect(3) = 3e-16
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +2
Query: 59 HYFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPVAQGPRFSL 208
HYF+G+E S ++L+Q+KY LL++ M NC P STP++ + +L
Sbjct: 232 HYFLGIEVTKVSNGIILTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTL 281
Score = 37.0 bits (84), Expect(3) = 3e-16
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKSLAVTSAKMLRILYLLEELPTYFSPSCQNTW 662
K+ T+SRSS +AEYK++A T+A+++ + LL EL SP W
Sbjct: 395 KQSTVSRSSTEAEYKAVANTTAELMWVQTLLRELGIE-SPKAVKIW 439
>gb|ABA95366.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 552
Score = 55.1 bits (131), Expect(3) = 3e-16
Identities = 43/108 (39%), Positives = 53/108 (49%), Gaps = 11/108 (10%)
Frame = +1
Query: 238 DVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDMLEAALALVLHC 417
D + S G L YLTLTR D+SF+V V Q +H+PT H +VKR + L ++C
Sbjct: 329 DTTQYRSIVGALPYLTLTRPDISFSVN-KVCQFLHSPTTVHWTVVKR--ILRYLKYTVNC 385
Query: 418 QL---VNLMLLPPILIQTHWARCHD----TSGCCVFLG----SWSFRK 528
L + LL WA C D T G VFLG SWS RK
Sbjct: 386 GLRISKSSSLLVSGFCDADWAGCLDDRRSTGGFAVFLGSNLVSWSARK 433
Score = 42.0 bits (97), Expect(3) = 3e-16
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = +2
Query: 59 HYFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPV 184
HYF+G+E +S ++L+Q+KY +L + M +C P STP+
Sbjct: 270 HYFLGIEVNKTSDGIMLTQEKYASDILRRVGMQDCKPVSTPL 311
Score = 35.0 bits (79), Expect(3) = 3e-16
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKSLAVTSAKMLRILYLLEELPTYFSPSCQNTW 662
K+ T+SRSS +AEYK+LA T A+++ + LL E+ +P W
Sbjct: 433 KQTTVSRSSTEAEYKALADTKAEIMWLQTLLYEIGIE-TPKAAKVW 477
>emb|CAN75351.1| hypothetical protein VITISV_031045 [Vitis vinifera]
Length = 300
Score = 49.3 bits (116), Expect(3) = 3e-16
Identities = 41/112 (36%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Frame = +1
Query: 229 LLDDVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDML----EAA 396
L D + S AG LQYLT+T DLSF+V + Q +HAPT H + +KR + A
Sbjct: 84 LFSDPTLFRSLAGALQYLTITSPDLSFSVN-SICQFMHAPTEDHFRALKRILRYVKGTAH 142
Query: 397 LALVLHCQLVNLMLLPPILIQTHWARCHD----TSGCCVFLG----SWSFRK 528
L LH Q +L W C D T+G +F G SWS +K
Sbjct: 143 HGLQLHKQSTRDLL---GYSDADWDGCPDTRRSTTGYAIFFGANLISWSSKK 191
Score = 45.1 bits (105), Expect(3) = 3e-16
Identities = 22/49 (44%), Positives = 29/49 (59%)
Frame = +2
Query: 59 HYFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPVAQGPRFS 205
HYF+GVE + + LSQ KY L LL++A M++ P STP G S
Sbjct: 31 HYFLGVEVQANEKGLFLSQTKYALDLLQRASMIDAKPISTPFVVGQHLS 79
Score = 37.7 bits (86), Expect(3) = 3e-16
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKSLAVTSAKMLRILYLLEEL 626
K+ T+SRSS +AEY+SLAV +A + I+ LL +L
Sbjct: 191 KQSTVSRSSAEAEYRSLAVATADIAWIIQLLRDL 224
>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
Group]
Length = 1399
Score = 52.8 bits (125), Expect(3) = 4e-16
Identities = 42/108 (38%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Frame = +1
Query: 238 DVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDMLEAALAL---V 408
D + S G LQYLTLTR D+SF++ V Q +HAPT +H VKR + + +
Sbjct: 1171 DSTQYRSVVGALQYLTLTRPDISFSIN-KVCQFLHAPTTTHWAAVKRILRYVKYTVDTGL 1229
Query: 409 LHCQLVNLMLLPPILIQTHWARCHD----TSGCCVFLG----SWSFRK 528
C+ N LL WA D T G VFLG SWS RK
Sbjct: 1230 KFCR--NPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARK 1275
Score = 42.7 bits (99), Expect(3) = 4e-16
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +2
Query: 59 HYFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPVAQGPRFSL 208
HYF+G+E ++LSQ+KY LL + M C P STP++ + S+
Sbjct: 1112 HYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSV 1161
Score = 36.2 bits (82), Expect(3) = 4e-16
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKSLAVTSAKMLRILYLLEELPTYFSPSCQNTW 662
K+ T+SRSS +AEYK+LA +A+++ + LL+EL SP W
Sbjct: 1275 KQATVSRSSIEAEYKALANATAEIMWVQTLLQELGVE-SPRAAKLW 1319
>gb|EEC76475.1| hypothetical protein OsI_14210 [Oryza sativa Indica Group]
Length = 391
Score = 52.8 bits (125), Expect(3) = 4e-16
Identities = 42/108 (38%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Frame = +1
Query: 238 DVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDMLEAALAL---V 408
D + S G LQYLTLTR D+SF++ V Q +HAPT +H VKR + + +
Sbjct: 163 DSTQYRSVVGALQYLTLTRPDISFSIN-KVCQFLHAPTTTHWAAVKRILRYVKYTVDTGL 221
Query: 409 LHCQLVNLMLLPPILIQTHWARCHD----TSGCCVFLG----SWSFRK 528
C+ N LL WA D T G VFLG SWS RK
Sbjct: 222 KFCR--NPSLLVSGFSDADWAGSPDDRRSTGGFAVFLGPNLVSWSARK 267
Score = 42.7 bits (99), Expect(3) = 4e-16
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +2
Query: 59 HYFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPVAQGPRFSL 208
HYF+G+E ++LSQ+KY LL + M C P STP++ + S+
Sbjct: 104 HYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYECKPVSTPLSTSEKLSV 153
Score = 36.2 bits (82), Expect(3) = 4e-16
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKSLAVTSAKMLRILYLLEELPTYFSPSCQNTW 662
K+ T+SRSS +AEYK+LA +A+++ + LL+EL SP W
Sbjct: 267 KQATVSRSSIEAEYKALANATAEIMWVQTLLQELGVE-SPRAAKLW 311
>gb|ABA95065.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 825
Score = 54.3 bits (129), Expect(3) = 1e-15
Identities = 42/114 (36%), Positives = 53/114 (46%), Gaps = 14/114 (12%)
Frame = +1
Query: 235 DDVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDMLEAALALVLH 414
+D + S G LQYLTLTR D++++V V Q +HAPT H +VKR L +
Sbjct: 703 NDATQYRSIVGALQYLTLTRPDIAYSVN-KVCQFLHAPTTDHWTVVKR-----ILRYLNQ 756
Query: 415 CQLVNLMLLPPILIQTH------WARCHD----TSGCCVFLG----SWSFRKSP 534
C + L + H WA D T G VFLG SWS RK P
Sbjct: 757 CTSLRLNIHKSASTLVHGYSDADWAGSIDDRKSTGGFAVFLGSNLVSWSARKQP 810
Score = 48.1 bits (113), Expect(3) = 1e-15
Identities = 21/50 (42%), Positives = 32/50 (64%)
Frame = +2
Query: 59 HYFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPVAQGPRFSL 208
HYF+G+E S +LL+Q+KY LL++ M NC P STP++ + +L
Sbjct: 645 HYFLGIEVTKVSNGILLTQEKYANDLLKRVNMSNCKPVSTPLSVSEKLTL 694
Score = 27.7 bits (60), Expect(3) = 1e-15
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKS 572
K+PT+SRSS +AEYK+
Sbjct: 808 KQPTVSRSSTEAEYKT 823
>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1256
Score = 47.0 bits (110), Expect(3) = 5e-15
Identities = 41/108 (37%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Frame = +1
Query: 235 DDVSHCTSSAGGLQYLTLTRHDLSFAVKYYVLQLIHAPTASHTQLVKRDM--LEAALALV 408
+D S+ S G LQYLTLTR D+ F V V Q +HAPT H +KR + L+ L
Sbjct: 1033 NDASNYRSVVGALQYLTLTRPDIYFPVN-KVCQFLHAPTIVHWAAMKRILRYLKQCTKLG 1091
Query: 409 LHCQLVNLMLLPPILIQTHWARCHD----TSGCCVFLG----SWSFRK 528
L ML+ WA D T G VFLG SW+ +K
Sbjct: 1092 LKISKSKSMLVSG-YSDADWAGNIDDRRSTGGFAVFLGDNLVSWNAKK 1138
Score = 45.8 bits (107), Expect(3) = 5e-15
Identities = 19/50 (38%), Positives = 33/50 (66%)
Frame = +2
Query: 59 HYFMGVECLNSSTAVLLSQKKYDL*LLEKAEMLNCCPASTPVAQGPRFSL 208
HYF+G+E +S+ ++L+Q+KY LL + M +C P STP++ + +L
Sbjct: 975 HYFLGIEVNKASSGIVLTQEKYVTDLLRRVGMTDCKPVSTPLSTSEKLTL 1024
Score = 35.0 bits (79), Expect(3) = 5e-15
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +3
Query: 525 KEPTISRSSGKAEYKSLAVTSAKMLRILYLLEELPTYFSPSCQNTW 662
K+ T+ RSS ++EYK+LA +A+++ I LLEEL + SP W
Sbjct: 1138 KQATVPRSSTESEYKALANATAEIMWIQTLLEEL-SVPSPPMARLW 1182