BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver27_contig00007257
         (2039 letters)

Database: ./nr 
           38,876,450 sequences; 13,856,398,315 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAP20859.1| retrotransposon protein, putative, Ty1-copia sub-...   293   3e-93
gb|AAD22155.1|AF061282_8 polyprotein [Sorghum bicolor]                294   1e-89
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   317   2e-83
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc...   310   2e-81
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   308   6e-81
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group...   308   6e-81
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   307   1e-80
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   307   1e-80
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   305   5e-80
gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subc...   304   1e-79
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   301   7e-79
gb|AAB82754.1| retrofit [Oryza longistaminata]                        300   1e-78
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   300   2e-78
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  299   4e-78
ref|XP_002442174.1| hypothetical protein SORBIDRAFT_08g015513 [S...   296   2e-77
gb|AAM18766.1|AC099325_22 putative copia-like retrotransposon Ho...   293   2e-76
gb|ABB47033.2| retrotransposon protein, putative, Ty1-copia subc...   293   2e-76
gb|AAL86510.1|AC099040_14 putative retrotransposon protein [Oryz...   293   2e-76
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p...   293   3e-76
emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera]   291   6e-76

>gb|AAP20859.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 352

 Score =  293 bits (749), Expect(2) = 3e-93
 Identities = 147/279 (52%), Positives = 197/279 (70%), Gaps = 2/279 (0%)
 Frame = +1

Query: 994  FLELKRFCTSSGLFLSQQRYDHDLLIRAKLDGVKPIQIPLSTSGDIYSDRSTLL--SDAS 1167
            FL ++      G+ +SQ++Y  DLL R  +   K +  PLS S  + + + T+L  +DA+
Sbjct: 67   FLGIEVTKIPGGILMSQEKYASDLLKRVNMSDCKSVATPLSASEKLIAGKGTILGPNDAT 126

Query: 1168 EYRSIVGALQYLTFTRPDLAYAVNKVCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRP 1347
            +YRSIVGALQYLT TR D+A++VNKVCQF+H PT  HW  VK ILRY+K     G+ +  
Sbjct: 127  QYRSIVGALQYLTLTRLDIAFSVNKVCQFLHNPTTEHWAAVKRILRYIKQCTGLGLRICK 186

Query: 1348 SSSLQLSFNAYVDSDWAGSLDDRRSTSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGL 1527
            SSS+ +S   Y D+DWAG LDDRRST G+ V LG N++S +A+KQ TVSRSSTEAEY+ L
Sbjct: 187  SSSMIVS--GYSDADWAGCLDDRRSTGGFAVYLGDNLVSWNAKKQATVSRSSTEAEYKAL 244

Query: 1528 AIAIAEIMWIQSLLSELRVSTQSPPVLWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQ 1707
            A A AEIMW+Q+LL EL + + +   LWCDN+GA YL+ NP+FHARTKHIE+DYHFVR++
Sbjct: 245  ANATAEIMWVQTLLQELNIVSPAMAQLWCDNMGAKYLSFNPVFHARTKHIEVDYHFVRER 304

Query: 1708 VASKLLDVRFISSKDQIADIFTKPLSKDRFSLLRFKLTV 1824
            VA KLL V ++S+ DQ+AD FTK L   +    ++ L +
Sbjct: 305  VARKLLQVDYVSTNDQVADGFTKALPVKQLENFKYNLNL 343



 Score = 79.0 bits (193), Expect(2) = 3e-93
 Identities = 40/70 (57%), Positives = 50/70 (71%)
 Frame = +3

Query: 798  LLQIGFVTSKCDSSLFIYNGPYDTIYLLVYVDDIIVTGSNSMGITSILTRLQQEFAIKDL 977
            L  +GF  SK D+SLF YN    TI+LL+YVDDIIV  S    ++++L  LQ+EFA+KDL
Sbjct: 2    LHDLGFKGSKADTSLFFYNKGSLTIFLLIYVDDIIVVSSRKEAVSALLQDLQKEFALKDL 61

Query: 978  GALSYFLGIE 1007
            G L YFLGIE
Sbjct: 62   GDLHYFLGIE 71


>gb|AAD22155.1|AF061282_8 polyprotein [Sorghum bicolor]
          Length = 1012

 Score =  294 bits (752), Expect(2) = 1e-89
 Identities = 154/279 (55%), Positives = 199/279 (71%), Gaps = 2/279 (0%)
 Frame = +1

Query: 997  LELKRFCTSSGLFLSQQRYDHDLLIRAKLDGVKPIQIPLSTSGDIYSDRSTLLS--DASE 1170
            +E+KR  TS  + L+Q+RY  ++L R+ +D   P+  PL +S  +  +    L   DA++
Sbjct: 736  IEVKRGNTS--MLLTQERYATEVLKRSGMDKCHPVDTPLCSSEKLSIEDGNKLGSEDATK 793

Query: 1171 YRSIVGALQYLTFTRPDLAYAVNKVCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPS 1350
            Y S+VGALQYLT TRPD+++AVNKVCQF+H+PT  HW  VK ILRY+K T   GI    S
Sbjct: 794  YCSVVGALQYLTLTRPDISFAVNKVCQFLHSPTTIHWSAVKRILRYIKGTTKLGIKFSKS 853

Query: 1351 SSLQLSFNAYVDSDWAGSLDDRRSTSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGLA 1530
             S+ +S  A+ D+DWAG +DDRRST G+ V LG N+IS +A+KQ TVSRSSTEAEY+ LA
Sbjct: 854  ESMLVS--AFADADWAGCVDDRRSTGGFAVFLGNNLISWTAKKQPTVSRSSTEAEYKALA 911

Query: 1531 IAIAEIMWIQSLLSELRVSTQSPPVLWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQV 1710
             A AE++W+Q LL+EL V       LWCDNLGATYL+ NPIFHARTKHIEID+HFVR++V
Sbjct: 912  NATAEMIWVQKLLNELGVRHPPRARLWCDNLGATYLSANPIFHARTKHIEIDFHFVRERV 971

Query: 1711 ASKLLDVRFISSKDQIADIFTKPLSKDRFSLLRFKLTVQ 1827
            A KLL+VRFIS+ DQ+AD FTK L   +    R  L +Q
Sbjct: 972  AQKLLEVRFISTGDQLADGFTKALPVIKLKKFRDNLNLQ 1010



 Score = 65.5 bits (158), Expect(2) = 1e-89
 Identities = 33/62 (53%), Positives = 43/62 (69%)
 Frame = +3

Query: 822  SKCDSSLFIYNGPYDTIYLLVYVDDIIVTGSNSMGITSILTRLQQEFAIKDLGALSYFLG 1001
            S  D+SLF +N    T+++LVYVDDIIV  S+     ++L  LQ +FA+KDLG L YFLG
Sbjct: 676  SPADASLFYFNKGRYTLFVLVYVDDIIVASSSPDATKALLVDLQHDFALKDLGDLHYFLG 735

Query: 1002 IE 1007
            IE
Sbjct: 736  IE 737


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score =  317 bits (811), Expect = 2e-83
 Identities = 182/374 (48%), Positives = 238/374 (63%), Gaps = 9/374 (2%)
 Frame = +1

Query: 730  CKLHRSLYGLKQAPRGTTSSVPFCCKL-DLLLQSV---THLYLSTMAHMTLFICWCMWMI 897
            CKL ++LYGLKQAPR   S +    KL D+  Q     T L+      + +F+   +  I
Sbjct: 879  CKLDKALYGLKQAPRAWYSRLSK--KLYDMGFQGSKADTSLFFYNKGDLIIFVLIYVDDI 936

Query: 898  L---SLQVPIPWXXXXXXXXXXXXXXXKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLL 1068
            +   S Q  +P                K L     FL ++    S G+ L+Q +Y +DLL
Sbjct: 937  IVTSSRQEAVP----ALLRDLQKEFALKDLGDLHYFLGIEVTKVSGGIVLTQDKYVNDLL 992

Query: 1069 IRAKLDGVKPIQIPLSTSGDIYSDRSTLL--SDASEYRSIVGALQYLTFTRPDLAYAVNK 1242
             R  +   KP+  PLSTS  +  +    L  +DA+ YRS+VGALQYLT TRPD+A+ VNK
Sbjct: 993  RRVNMFDCKPVSTPLSTSEKLSINEGDPLGPNDATHYRSVVGALQYLTLTRPDIAFPVNK 1052

Query: 1243 VCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRS 1422
            VCQF+HAPT  HW  VK ILRYLK     G+ L  S S+ +S  AY D+DWAGSLDDRRS
Sbjct: 1053 VCQFLHAPTTHHWAAVKRILRYLKQCTRLGLKLSKSRSMLVS--AYSDADWAGSLDDRRS 1110

Query: 1423 TSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPP 1602
            T G+ V LG N++S SARKQ TVSRSSTE+EY+ LA A AEIMW+Q+LL+EL+V + S  
Sbjct: 1111 TGGFAVFLGDNLVSWSARKQATVSRSSTESEYKALANATAEIMWVQTLLAELQVESPSMA 1170

Query: 1603 VLWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVASKLLDVRFISSKDQIADIFTKPL 1782
             LWCDNLGA YL+ NP+FHARTKHIE+DYHFVR++V+ KLL++ F+ + DQ+AD FTK L
Sbjct: 1171 KLWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSRKLLEIDFVPTGDQVADGFTKAL 1230

Query: 1783 SKDRFSLLRFKLTV 1824
            S  +    ++ L +
Sbjct: 1231 SVRQLENFKYNLNL 1244


>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 932

 Score =  310 bits (794), Expect = 2e-81
 Identities = 182/371 (49%), Positives = 227/371 (61%), Gaps = 6/371 (1%)
 Frame = +1

Query: 730  CKLHRSLYGLKQAPRGTTSSVPFCCKLDLL----LQSVTHLYLSTMAHMTLFICWCMWMI 897
            CKL ++LYGLKQAPR   S +    KL  L     ++ T L+       T+FI   +  I
Sbjct: 566  CKLDKALYGLKQAPRAWYSRLS--TKLQELGFISSKADTSLFFYNKGGCTIFILVYVDDI 623

Query: 898  LSLQVPIPWXXXXXXXXXXXXXXXKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLLIRA 1077
            +                       K L     FL ++    S GL LSQ  Y  D+L RA
Sbjct: 624  IVASSSAE-VVAALLKDLEKDFALKDLGDLHYFLGIEVKKVSQGLVLSQAWYASDILKRA 682

Query: 1078 KLDGVKPIQIPLSTSGDIYSDRSTLL--SDASEYRSIVGALQYLTFTRPDLAYAVNKVCQ 1251
             +   KP   PLST+  +  +    L  +DAS YRSIVGALQYLT TR DL++ VNKVCQ
Sbjct: 683  GMSICKPASTPLSTTEKLSIEDGDFLGQNDASHYRSIVGALQYLTLTRSDLSFLVNKVCQ 742

Query: 1252 FMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRSTSG 1431
            F+H+PT  HW  VK ILRY+K T  FG+    S S+ +S  A+ D+DWAG  DDRRST G
Sbjct: 743  FLHSPTTVHWSAVKRILRYIKGTVEFGLRFGKSDSMLIS--AFSDADWAGCSDDRRSTGG 800

Query: 1432 YCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPPVLW 1611
            + V LG N+IS SARKQ TVSRSSTEAEY+ LA A  E+ W++ +L ELR++  S   LW
Sbjct: 801  FAVFLGPNLISWSARKQATVSRSSTEAEYKALANATTEVTWVRKILDELRIARPSVAQLW 860

Query: 1612 CDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVASKLLDVRFISSKDQIADIFTKPLSKD 1791
            CDNLGATYL+ NP+FHARTKHIEIDYHFVR+QVA KLLD++FIS+ DQ+AD FTK L   
Sbjct: 861  CDNLGATYLSANPVFHARTKHIEIDYHFVREQVAKKLLDIQFISTTDQLADGFTKSLPAP 920

Query: 1792 RFSLLRFKLTV 1824
              +  R  L +
Sbjct: 921  SLAQYRHNLNL 931


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  308 bits (789), Expect = 6e-81
 Identities = 177/382 (46%), Positives = 236/382 (61%), Gaps = 5/382 (1%)
 Frame = +1

Query: 730  CKLHRSLYGLKQAPRGTTSSVPFCCKLDLLLQSV---THLYLSTMAHMTLFICWCMWMIL 900
            CKL ++LYGLKQAPR   S +     +DL  +     T L+      +T+F+   +  I+
Sbjct: 1085 CKLDKALYGLKQAPRAWFSRLSKKL-MDLGFKGSKPDTSLFFLNKGDITMFVLVYVDDII 1143

Query: 901  SLQVPIPWXXXXXXXXXXXXXXXKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLLIRAK 1080
             +                     K L     FL ++     +G+ L+Q +Y +DLL +  
Sbjct: 1144 -VASSSEKATAALLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYANDLLKKVG 1202

Query: 1081 LDGVKPIQIPLSTSGDIYSDRSTLLS--DASEYRSIVGALQYLTFTRPDLAYAVNKVCQF 1254
            +   KP   PLS S  +     +LL   DAS YRS+VGALQYLT TRPD+A++VNKVCQF
Sbjct: 1203 MIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDIAFSVNKVCQF 1262

Query: 1255 MHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRSTSGY 1434
            +HAPT  HW  VK ILRYLK     G+ +  S S  +S   + D+DWAG LDDRRST G+
Sbjct: 1263 LHAPTTVHWIAVKRILRYLKQCTRLGLEIHKSGSTLVS--GFSDADWAGCLDDRRSTGGF 1320

Query: 1435 CV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPPVLWC 1614
             + LG N++S +ARKQ TVSRSSTE+EY+ +A A AEIMW+Q+LL+EL + +     +WC
Sbjct: 1321 AIFLGSNLVSWNARKQATVSRSSTESEYKAIANATAEIMWVQTLLAELEIKSPKAAKIWC 1380

Query: 1615 DNLGATYLTVNPIFHARTKHIEIDYHFVRDQVASKLLDVRFISSKDQIADIFTKPLSKDR 1794
            DNLGA YL+ NP+FHARTKHIE+DYHFVR++V+ KLL++ F+S+ DQ+AD FTKPLS   
Sbjct: 1381 DNLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVSTNDQVADGFTKPLSVR- 1439

Query: 1795 FSLLRFKLTVQDNPLRLREGVS 1860
              L  FK  +      LREGVS
Sbjct: 1440 -LLENFKSNLNLVRSGLREGVS 1460


>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1256

 Score =  308 bits (789), Expect = 6e-81
 Identities = 180/380 (47%), Positives = 235/380 (61%), Gaps = 15/380 (3%)
 Frame = +1

Query: 730  CKLHRSLYGLKQAPRGTTSSVPFCCKLDLLLQSV--------THLYLSTMAHMTLFICWC 885
            CKL ++LYGLKQAPR       +  KL   LQ +        T L+      + +F+   
Sbjct: 888  CKLDKALYGLKQAPRA------WYAKLSQKLQHLGFQGSKADTSLFFYNKGGLIIFVLVY 941

Query: 886  MWMIL---SLQVPIPWXXXXXXXXXXXXXXXKILAPCLIFLELKRFCTSSGLFLSQQRYD 1056
            +  I+   S Q  +P                K L     FL ++    SSG+ L+Q++Y 
Sbjct: 942  VDDIIVASSRQDAVP----ALLKDLQKDFALKDLGDLHYFLGIEVNKASSGIVLTQEKYV 997

Query: 1057 HDLLIRAKLDGVKPIQIPLSTSGDIYSDRSTLL--SDASEYRSIVGALQYLTFTRPDLAY 1230
             DLL R  +   KP+  PLSTS  +      LL  +DAS YRS+VGALQYLT TRPD+ +
Sbjct: 998  TDLLRRVGMTDCKPVSTPLSTSEKLTLHEGDLLGPNDASNYRSVVGALQYLTLTRPDIYF 1057

Query: 1231 AVNKVCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLD 1410
             VNKVCQF+HAPT+ HW  +K ILRYLK     G+ +  S S+ +S   Y D+DWAG++D
Sbjct: 1058 PVNKVCQFLHAPTIVHWAAMKRILRYLKQCTKLGLKISKSKSMLVS--GYSDADWAGNID 1115

Query: 1411 DRRSTSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVST 1590
            DRRST G+ V LG N++S +A+KQ TV RSSTE+EY+ LA A AEIMWIQ+LL EL  S 
Sbjct: 1116 DRRSTGGFAVFLGDNLVSWNAKKQATVPRSSTESEYKALANATAEIMWIQTLLEEL--SV 1173

Query: 1591 QSPPV--LWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVASKLLDVRFISSKDQIAD 1764
             SPP+  LWCDNLGA YL+ NP+FHARTKHIE+DYHFVR+++  KLL+V FI + DQ+AD
Sbjct: 1174 PSPPMARLWCDNLGAKYLSSNPVFHARTKHIEVDYHFVRERMQRKLLEVEFIPTGDQVAD 1233

Query: 1765 IFTKPLSKDRFSLLRFKLTV 1824
             FTK LS  +    ++ L V
Sbjct: 1234 GFTKALSARQLENFKYNLNV 1253


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  307 bits (787), Expect = 1e-80
 Identities = 175/371 (47%), Positives = 234/371 (63%), Gaps = 11/371 (2%)
 Frame = +1

Query: 730  CKLHRSLYGLKQAPRGTTSSVPFCCKLDLLLQSVTHLYLSTMAHMTLFICWCMWMILSLQ 909
            C L +SLYGLKQ PR   S      +L   LQS+   ++ + A ++LFI       + + 
Sbjct: 1065 CHLQKSLYGLKQRPRAWYS------RLSEKLQSLG--FVPSKADVSLFIYNAHSTAIYIL 1116

Query: 910  VPI---------PWXXXXXXXXXXXXXXXKILAPCLIFLELKRFCTSSGLFLSQQRYDHD 1062
            V +         P                K L     FL ++      GL L Q++Y  D
Sbjct: 1117 VYVDDIIITGSSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGLLLCQEKYARD 1176

Query: 1063 LLIRAKLDGVKPIQIPLSTSGDIYSDRSTLLS--DASEYRSIVGALQYLTFTRPDLAYAV 1236
            LL R  ++  KP+  P++TS  + +   TLLS  + ++YRS+VGALQYLT TRPDL+YA+
Sbjct: 1177 LLKRVGMECCKPVHTPVATSEKLSASAGTLLSPEETTKYRSVVGALQYLTLTRPDLSYAI 1236

Query: 1237 NKVCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDR 1416
            N+VCQF+HAPT  HW  VK ILR +++T   G+ +RPS SL LS  A+ D+DWAG  DDR
Sbjct: 1237 NRVCQFLHAPTDLHWTAVKRILRNIQHTIGLGLTIRPSLSLMLS--AFSDADWAGCPDDR 1294

Query: 1417 RSTSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQS 1596
            +ST GY + LG N+IS +++KQ TVSRSSTEAEY+ +A A AE++W+QSLL EL +    
Sbjct: 1295 KSTGGYALFLGPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTG 1354

Query: 1597 PPVLWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVASKLLDVRFISSKDQIADIFTK 1776
             P LWCDNLGATYL+  PIF+ARTKHIE+D+HFVRD+V SK LD+R IS+ DQ+AD FTK
Sbjct: 1355 IPRLWCDNLGATYLSSKPIFNARTKHIEVDFHFVRDRVLSKKLDIRLISTNDQVADGFTK 1414

Query: 1777 PLSKDRFSLLR 1809
             L+  R +  R
Sbjct: 1415 ALTIGRLNEFR 1425


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  307 bits (787), Expect = 1e-80
 Identities = 171/357 (47%), Positives = 225/357 (63%), Gaps = 5/357 (1%)
 Frame = +1

Query: 730  CKLHRSLYGLKQAPRGTTSSVPFCCKLDLLLQSV---THLYLSTMAHMTLFICWCMWMIL 900
            CKL ++LYGLKQAPR   S +     L L  Q+    T L+      +T+F+   +  I+
Sbjct: 945  CKLDKALYGLKQAPRAWYSRLSNKL-LSLGFQASKADTSLFFYNKGSVTIFVLVYVDDII 1003

Query: 901  SLQVPIPWXXXXXXXXXXXXXXXKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLLIRAK 1080
             +                     K L     FL ++      G+ L+Q +Y  DLL +  
Sbjct: 1004 -VASSTHKATEALLSDLNKEFALKDLGDLNYFLGIEVNKVRDGIILTQDKYASDLLKKVG 1062

Query: 1081 LDGVKPIQIPLSTSGDIYSDRSTLLS--DASEYRSIVGALQYLTFTRPDLAYAVNKVCQF 1254
            +   KPI  PLSTS  +     + L   D ++YRSIVGALQYLT TRPD+A++VNKVCQF
Sbjct: 1063 MSDCKPISTPLSTSEKLSIHEGSPLGEKDITQYRSIVGALQYLTLTRPDIAFSVNKVCQF 1122

Query: 1255 MHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRSTSGY 1434
            +HAPT  HW  VK ILRY+K     G+ +  S S  +S  A+ D+DWAGS+DDR+ST G+
Sbjct: 1123 LHAPTTLHWAAVKRILRYIKQCTNLGLHIHRSDSTLVS--AFSDADWAGSVDDRKSTGGF 1180

Query: 1435 CV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPPVLWC 1614
             V LG N++S SARKQ TVSRSSTE+EY+ LA A AE++W+Q LL+E+ + +     LWC
Sbjct: 1181 AVFLGSNLVSWSARKQPTVSRSSTESEYKALANATAELIWVQILLTEISIKSPRAAKLWC 1240

Query: 1615 DNLGATYLTVNPIFHARTKHIEIDYHFVRDQVASKLLDVRFISSKDQIADIFTKPLS 1785
            DNLGA YL+ NPIFHARTKHIE+DYHFVRD+VA KLLD+ ++ + DQ+AD FTKPLS
Sbjct: 1241 DNLGAKYLSANPIFHARTKHIEVDYHFVRDRVAKKLLDIEYVPTGDQVADGFTKPLS 1297


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  305 bits (781), Expect = 5e-80
 Identities = 181/362 (50%), Positives = 231/362 (63%), Gaps = 11/362 (3%)
 Frame = +1

Query: 730  CKLHRSLYGLKQAPRGTTSSVPFCCKL-DLLLQSV---THLYLSTMAHMTLFICWCMWMI 897
            CKL ++LYGLKQAPR   S +    KL DL  Q     T L+      + +F+   +  I
Sbjct: 1079 CKLDKALYGLKQAPRAWYSRLSK--KLYDLGFQGSKGDTSLFFYNKGGLIIFVLIYVDDI 1136

Query: 898  L---SLQVPIPWXXXXXXXXXXXXXXXKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLL 1068
            +   S Q  +                 K L     FL ++    +  + L+Q +Y  DLL
Sbjct: 1137 IVTSSRQEAVS----ALLQDLKKEFALKDLGDLHYFLGIEVNKVTDEIILTQDKYACDLL 1192

Query: 1069 IRAKLDGVKPIQIPLSTSGDIYSDRSTLLS--DASEYRSIVGALQYLTFTRPDLAYAVNK 1242
             R  +   KP+  PLSTS  + +    LL   DA+ YRS+VGALQYLT TRPD+A+ VNK
Sbjct: 1193 RRVNMFDCKPVSTPLSTSEKLSAHEGDLLGPLDATNYRSVVGALQYLTLTRPDIAFPVNK 1252

Query: 1243 VCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRS 1422
            VCQF+HAPT  HW  VK ILRYLK     G+ L  S S+ +S  AY D+DWAGSLDDRRS
Sbjct: 1253 VCQFLHAPTTVHWAAVKRILRYLKQCTKLGLKLCKSKSMLVS--AYSDADWAGSLDDRRS 1310

Query: 1423 TSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPP 1602
            T G+ V LG N++S  ARKQ TVSRSSTE+EY+ LA A AEIMW+Q+LL+EL+V  QSPP
Sbjct: 1311 TGGFAVFLGDNLVSWCARKQATVSRSSTESEYKALANATAEIMWVQTLLTELQV--QSPP 1368

Query: 1603 V--LWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVASKLLDVRFISSKDQIADIFTK 1776
            +  LWCDNLGA YL+ NP+FHARTKHIE+DYHFVR++V+ KLL++ F+ + DQ+AD FTK
Sbjct: 1369 MAKLWCDNLGAKYLSSNPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPTGDQVADGFTK 1428

Query: 1777 PL 1782
             L
Sbjct: 1429 AL 1430


>gb|ABF96081.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1180

 Score =  304 bits (778), Expect = 1e-79
 Identities = 176/366 (48%), Positives = 231/366 (63%), Gaps = 13/366 (3%)
 Frame = +1

Query: 730  CKLHRSLYGLKQAPRGTTSSVPFCCKLDLLLQSV--------THLYLSTMAHMTLFICWC 885
            CKL ++LYGLKQAPR       +  +L   LQ +        T L+      +T+F+   
Sbjct: 706  CKLDKALYGLKQAPRA------WYARLSQKLQQLGFQGSKADTSLFFYNKQGLTIFVLIY 759

Query: 886  MWMIL---SLQVPIPWXXXXXXXXXXXXXXXKILAPCLIFLELKRFCTSSGLFLSQQRYD 1056
            +  I+   S Q  +                 K L     FL ++    S+G+ L+Q++Y 
Sbjct: 760  VDDIIVASSRQDAV----LTLLQDLQKEFALKDLGDLHYFLGIEVNKISNGIILTQEKYA 815

Query: 1057 HDLLIRAKLDGVKPIQIPLSTSGDIYSDRSTLL--SDASEYRSIVGALQYLTFTRPDLAY 1230
            +DLL R  +   KP+   LSTS  +      LL  +DAS YRS+VGALQYLT TRPD+A+
Sbjct: 816  NDLLKRVGMIDCKPVSASLSTSEKLTLHEGDLLGLNDASNYRSVVGALQYLTLTRPDIAF 875

Query: 1231 AVNKVCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLD 1410
             VNKVCQF+HAPT  HW  VK ILRYLK     G+ +  S S+ +S   Y D+DWAG++D
Sbjct: 876  PVNKVCQFLHAPTTIHWATVKRILRYLKQCTKLGLKISKSKSMLVS--GYSDTDWAGNVD 933

Query: 1411 DRRSTSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVST 1590
            DRRST G+ V LG N++S +ARKQ TVSRSSTE+EY+ LA A AEIMWIQ+LL+EL VS+
Sbjct: 934  DRRSTRGFAVFLGDNLVSWNARKQATVSRSSTESEYKVLANATAEIMWIQTLLAELGVSS 993

Query: 1591 QSPPVLWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVASKLLDVRFISSKDQIADIF 1770
                 LWCDNLGA YL+ NP+FHARTKHIE+DYHFVR++V  +LL+V F+ + DQ+AD F
Sbjct: 994  PLMARLWCDNLGAKYLSSNPVFHARTKHIEVDYHFVRERVQRRLLEVDFVPTGDQVADGF 1053

Query: 1771 TKPLSK 1788
            TK LS+
Sbjct: 1054 TKALSE 1059


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  301 bits (771), Expect = 7e-79
 Identities = 170/371 (45%), Positives = 232/371 (62%), Gaps = 6/371 (1%)
 Frame = +1

Query: 730  CKLHRSLYGLKQAPRGTTSSVPFCCKLDLL----LQSVTHLYLSTMAHMTLFICWCMWMI 897
            CKL ++LYGLKQAPR   S +    KL  L     ++ T L+      +T+F+   +  I
Sbjct: 1063 CKLDKALYGLKQAPRAWYSRLSG--KLHDLGFKGSKADTSLFFYNKGSLTIFLLIYVDDI 1120

Query: 898  LSLQVPIPWXXXXXXXXXXXXXXXKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLLIRA 1077
            + +                     K L     FL ++      G+ +SQ++Y  DLL R 
Sbjct: 1121 IVVSSRKE-AVSALLQDLQKEFALKDLGDLHYFLGIEVTKIPGGILMSQEKYASDLLKRV 1179

Query: 1078 KLDGVKPIQIPLSTSGDIYSDRSTLL--SDASEYRSIVGALQYLTFTRPDLAYAVNKVCQ 1251
             +   K +  PLS S  + + + T+L  +DA++YRSIVGALQYLT TR D+A++VNKVCQ
Sbjct: 1180 NMSDCKSVATPLSASEKLIAGKGTILGPNDATQYRSIVGALQYLTLTRLDIAFSVNKVCQ 1239

Query: 1252 FMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRSTSG 1431
            F+H PT  HW  VK ILRY+K     G+ +  SSS+ +S   Y D+DWAG LDDRRST G
Sbjct: 1240 FLHNPTTEHWAAVKRILRYIKQCTGLGLRICKSSSMIVS--GYSDADWAGCLDDRRSTGG 1297

Query: 1432 YCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPPVLW 1611
            + V LG N++S +A+KQ TVSRSSTEAEY+ LA A AEIMW+Q+LL EL + + +   LW
Sbjct: 1298 FAVYLGDNLVSWNAKKQATVSRSSTEAEYKALANATAEIMWVQTLLQELNIVSPAMAQLW 1357

Query: 1612 CDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVASKLLDVRFISSKDQIADIFTKPLSKD 1791
            CDN+GA YL+ NP+FHARTKHIE+DYHFVR++VA KLL V ++S+ DQ+AD FTK L   
Sbjct: 1358 CDNMGAKYLSFNPVFHARTKHIEVDYHFVRERVARKLLQVDYVSTNDQVADGFTKALPVK 1417

Query: 1792 RFSLLRFKLTV 1824
            +    ++ L +
Sbjct: 1418 QLENFKYNLNL 1428


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  300 bits (769), Expect = 1e-78
 Identities = 167/358 (46%), Positives = 226/358 (63%), Gaps = 6/358 (1%)
 Frame = +1

Query: 730  CKLHRSLYGLKQAPRGTTSSVPFCCKLDLL----LQSVTHLYLSTMAHMTLFICWCMWMI 897
            CKL ++LYGLKQAPR   S +    KL  L     ++ T L+      + +F+   +  I
Sbjct: 1077 CKLDKALYGLKQAPRAWYSRLSK--KLVELGFEASKADTSLFFLNKGGILMFVLVYVDDI 1134

Query: 898  LSLQVPIPWXXXXXXXXXXXXXXXKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLLIRA 1077
            + +                     K L     FL ++    S+G+ L+Q++Y +DLL R 
Sbjct: 1135 I-VASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNGVILTQEKYANDLLKRV 1193

Query: 1078 KLDGVKPIQIPLSTSGDI--YSDRSTLLSDASEYRSIVGALQYLTFTRPDLAYAVNKVCQ 1251
             +   KP+  PLS S  +  Y       +DA +YRSIVGALQYLT TRPD+AY+VNKVCQ
Sbjct: 1194 NMSNCKPVSTPLSVSEKLTLYEGSPLGPNDAIQYRSIVGALQYLTLTRPDIAYSVNKVCQ 1253

Query: 1252 FMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRSTSG 1431
            F+HAPT  HW  VK ILRYL    + G+ +  S+S  +  + Y D+DWAGS+DDR+ST G
Sbjct: 1254 FLHAPTTSHWIAVKRILRYLNQCTSLGLHIHKSASTLV--HGYSDADWAGSIDDRKSTGG 1311

Query: 1432 YCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPPVLW 1611
            + V LG N++S SARKQ TVSRSSTEAEY+ +A   AE++W+Q+LL EL + +     +W
Sbjct: 1312 FAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTLLKELGIESPKAAKIW 1371

Query: 1612 CDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVASKLLDVRFISSKDQIADIFTKPLS 1785
            CDNLGA YL+ NP+FHARTKHIE+DYHFVR++V+ KLL++ F+ S DQ+AD FTK LS
Sbjct: 1372 CDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALS 1429


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  300 bits (767), Expect = 2e-78
 Identities = 170/371 (45%), Positives = 229/371 (61%), Gaps = 6/371 (1%)
 Frame = +1

Query: 730  CKLHRSLYGLKQAPRGTTSSVPFCCKLDLL----LQSVTHLYLSTMAHMTLFICWCMWMI 897
            CKL ++LYGLKQAPR   S +    KL  L     +S T L+  +   + +F+   +  I
Sbjct: 1062 CKLDKALYGLKQAPRAWYSRLS--TKLHELGFKSSKSDTSLFFYSKGDVAMFMLVYVDDI 1119

Query: 898  LSLQVPIPWXXXXXXXXXXXXXXXKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLLIRA 1077
            +     I                 K L     FL ++    ++G+ L+Q++Y  D+L R 
Sbjct: 1120 IVASSSID-ATNALLKNLNQEFALKDLGRLHYFLGIEVKEVNNGIVLTQEKYAMDVLKRV 1178

Query: 1078 KLDGVKPIQIPLSTSGDIYSDRSTLLS--DASEYRSIVGALQYLTFTRPDLAYAVNKVCQ 1251
             +   K +  PLS S  + +         D++ YRS+VGALQYLT TRPDL+++VNKVCQ
Sbjct: 1179 NMSDCKAVNTPLSISEKLSAHEGNPFGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQ 1238

Query: 1252 FMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRSTSG 1431
            ++HAPT  HW   K ILRYLK+T   G+ +  S+SL +S  A+ D+DWAG LDDR ST G
Sbjct: 1239 YLHAPTTKHWAAAKRILRYLKHTVKLGLKISKSNSLLVS--AFSDADWAGCLDDRHSTGG 1296

Query: 1432 YCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPPVLW 1611
            + V +G N++S SARKQ TVSRSSTEAEY+ LA   AEIMWIQ+LL EL +       +W
Sbjct: 1297 FAVFIGPNLVSWSARKQATVSRSSTEAEYKALANVTAEIMWIQTLLHELGIQAPKIAKVW 1356

Query: 1612 CDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVASKLLDVRFISSKDQIADIFTKPLSKD 1791
            CDN+GA Y+T NP+FHARTKHIE+DYHFVR++VA K L V +IS+KDQ+AD FTK LS  
Sbjct: 1357 CDNIGAKYMTANPVFHARTKHIEVDYHFVRERVARKFLQVEYISTKDQVADGFTKTLSVR 1416

Query: 1792 RFSLLRFKLTV 1824
            +  + R  L +
Sbjct: 1417 QLEMFRNNLNL 1427


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  299 bits (765), Expect = 4e-78
 Identities = 166/358 (46%), Positives = 226/358 (63%), Gaps = 6/358 (1%)
 Frame = +1

Query: 730  CKLHRSLYGLKQAPRGTTSSVPFCCKLDLL----LQSVTHLYLSTMAHMTLFICWCMWMI 897
            CKL ++LYGLKQAPR   S +    KL  L     ++ T L+      + +F+   +  I
Sbjct: 1068 CKLDKALYGLKQAPRAWYSRLSK--KLVELGFEASKADTSLFFLNKGGIIMFVLVYVDDI 1125

Query: 898  LSLQVPIPWXXXXXXXXXXXXXXXKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLLIRA 1077
            + +                     K L     FL ++     +G+ L+Q++Y +DLL R 
Sbjct: 1126 I-IASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVPNGIVLTQEKYANDLLKRV 1184

Query: 1078 KLDGVKPIQIPLSTSGDI--YSDRSTLLSDASEYRSIVGALQYLTFTRPDLAYAVNKVCQ 1251
             +   KP+  PLS S  +  Y       +DA++YRSIVGALQYLT TRPD+AY+VNKVCQ
Sbjct: 1185 NMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQ 1244

Query: 1252 FMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRSTSG 1431
            F+HAPT  HW  VK ILRYL    + G+ +  S+S  +  + Y D+DWAGS+DDR+ST G
Sbjct: 1245 FLHAPTTDHWTAVKRILRYLNQCTSLGLNIHKSASTLV--HGYSDADWAGSVDDRKSTGG 1302

Query: 1432 YCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPPVLW 1611
            + V LG N++S SARKQ TVSRSSTEAEY+ +A   AE++W+Q+LL EL + +     +W
Sbjct: 1303 FAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTLLRELGIDSPKAAKIW 1362

Query: 1612 CDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVASKLLDVRFISSKDQIADIFTKPLS 1785
            CDNLGA YL+ NP+FHARTKHIE+DYHFVR++V+ KLL++ F+ S DQ+AD FTK LS
Sbjct: 1363 CDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALS 1420


>ref|XP_002442174.1| hypothetical protein SORBIDRAFT_08g015513 [Sorghum bicolor]
            gi|241942867|gb|EES16012.1| hypothetical protein
            SORBIDRAFT_08g015513 [Sorghum bicolor]
          Length = 757

 Score =  296 bits (758), Expect = 2e-77
 Identities = 172/365 (47%), Positives = 225/365 (61%), Gaps = 5/365 (1%)
 Frame = +1

Query: 730  CKLHRSLYGLKQAPRG---TTSSVPFCCKLDLLLQSVTHLYLSTMAHMTLFICWCMWMIL 900
            CKL ++LY LKQAPR      SS     +        +  Y +   H T+F+   +  I+
Sbjct: 397  CKLEKALYELKQAPRAWYARLSSKLISLRFKSSRADTSLFYYNKGGH-TIFVLVYVDDII 455

Query: 901  SLQVPIPWXXXXXXXXXXXXXXXKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLLIRAK 1080
                 +                 K L     FL ++    S+GL LSQ +Y +D+L+R+ 
Sbjct: 456  VASSSLE-ATKVLLSDLQKDFALKDLGDLHYFLGIEVKRDSNGLVLSQGKYANDILVRSG 514

Query: 1081 LDGVKPIQIPLSTSGDIYSDRSTLLS--DASEYRSIVGALQYLTFTRPDLAYAVNKVCQF 1254
            +   KP+  PL ++  I       L   D + YRS+VGALQYLT TRPD+++AVNKVCQF
Sbjct: 515  MSKSKPVHTPLPSTQKISITDGDKLGEEDCTRYRSLVGALQYLTLTRPDISFAVNKVCQF 574

Query: 1255 MHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRSTSGY 1434
            +HAPT  H   VK ILRY++ T  FG+ +R S    +S  +Y  +DWAG +DDRRST G+
Sbjct: 575  LHAPTTTHLSAVKRILRYIQGTSKFGLRIRKSKCRIVSAFSY--ADWAGDVDDRRSTGGF 632

Query: 1435 CV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPPVLWC 1614
             V LG N+IS +A+KQ TVSRSSTEAEY+ LA A AE+MW+Q LL+EL V       LWC
Sbjct: 633  AVFLGENLISWTAQKQATVSRSSTEAEYKALANATAEVMWVQKLLAELCVPHARVARLWC 692

Query: 1615 DNLGATYLTVNPIFHARTKHIEIDYHFVRDQVASKLLDVRFISSKDQIADIFTKPLSKDR 1794
            DNLGA YL+ NP+FHARTKHIEID+HFVR++VA KLLD+RFISS+DQ+AD FTK L   +
Sbjct: 693  DNLGAKYLSANPVFHARTKHIEIDFHFVRERVAQKLLDIRFISSEDQLADGFTKSLPVTK 752

Query: 1795 FSLLR 1809
            F   R
Sbjct: 753  FHKFR 757


>gb|AAM18766.1|AC099325_22 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
            sativa Japonica Group]
          Length = 1150

 Score =  293 bits (750), Expect = 2e-76
 Identities = 165/352 (46%), Positives = 218/352 (61%), Gaps = 10/352 (2%)
 Frame = +1

Query: 730  CKLHRSLYGLKQAPRGTTSSVPFCCKLDLLLQSV--------THLYLSTMAHMTLFICWC 885
            CKL ++LYGLKQAPR   S      +L + LQ +        T L+      +T+F+   
Sbjct: 695  CKLDKALYGLKQAPRAWYS------RLSMKLQQLGFSPSKADTSLFFYRKGSVTIFVLVY 748

Query: 886  MWMILSLQVPIPWXXXXXXXXXXXXXXXKILAPCLIFLELKRFCTSSGLFLSQQRYDHDL 1065
            +  I                         +      FL ++    S GL LSQ +Y HD+
Sbjct: 749  VDDITVASSSQDAVSSLLHNLKMDFALKDLGDLNYYFLGIEVKKISDGLVLSQDKYTHDI 808

Query: 1066 LIRAKLDGVKPIQIPLSTSGDIYSDRSTLLS--DASEYRSIVGALQYLTFTRPDLAYAVN 1239
            L R  +   KP   PLSTS  +     +LL   DA+ YRSIVGALQYLT TRPD+A+++N
Sbjct: 809  LKRIGMSTCKPAPTPLSTSEKLSVQEGSLLGPGDATNYRSIVGALQYLTLTRPDIAFSIN 868

Query: 1240 KVCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRR 1419
            KVCQF+H+PT+ HW  VK I+RYL+ T   G+ ++ S S+ +  NA+ D+DWAG +DDRR
Sbjct: 869  KVCQFLHSPTLTHWSAVKRIIRYLRGTVGMGLKIQKSQSMLV--NAFSDADWAGCVDDRR 926

Query: 1420 STSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSP 1599
            STSG+ V LG N+IS S RKQ TVSRSSTEAEY+ LA A AE++W+Q+LL EL +   S 
Sbjct: 927  STSGFAVFLGSNLISWSVRKQATVSRSSTEAEYKALANATAEVIWVQTLLKELGIQCPSM 986

Query: 1600 PVLWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVASKLLDVRFISSKDQ 1755
              LWCDNLGATYL+ NPIFHARTKHIE+ +HFVR++VA KLL++   S+ D+
Sbjct: 987  ARLWCDNLGATYLSANPIFHARTKHIEVYFHFVRERVAQKLLEIEGASAVDE 1038


>gb|ABB47033.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  293 bits (750), Expect = 2e-76
 Identities = 165/352 (46%), Positives = 218/352 (61%), Gaps = 10/352 (2%)
 Frame = +1

Query: 730  CKLHRSLYGLKQAPRGTTSSVPFCCKLDLLLQSV--------THLYLSTMAHMTLFICWC 885
            CKL ++LYGLKQAPR   S      +L + LQ +        T L+      +T+F+   
Sbjct: 657  CKLDKALYGLKQAPRAWYS------RLSMKLQQLGFSPSKADTSLFFYRKGSVTIFVLVY 710

Query: 886  MWMILSLQVPIPWXXXXXXXXXXXXXXXKILAPCLIFLELKRFCTSSGLFLSQQRYDHDL 1065
            +  I                         +      FL ++    S GL LSQ +Y HD+
Sbjct: 711  VDDITVASSSQDAVSSLLHNLKMDFALKDLGDLNYYFLGIEVKKISDGLVLSQDKYTHDI 770

Query: 1066 LIRAKLDGVKPIQIPLSTSGDIYSDRSTLLS--DASEYRSIVGALQYLTFTRPDLAYAVN 1239
            L R  +   KP   PLSTS  +     +LL   DA+ YRSIVGALQYLT TRPD+A+++N
Sbjct: 771  LKRIGMSTCKPAPTPLSTSEKLSVQEGSLLGPGDATNYRSIVGALQYLTLTRPDIAFSIN 830

Query: 1240 KVCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRR 1419
            KVCQF+H+PT+ HW  VK I+RYL+ T   G+ ++ S S+ +  NA+ D+DWAG +DDRR
Sbjct: 831  KVCQFLHSPTLTHWSAVKRIIRYLRGTVGMGLKIQKSQSMLV--NAFSDADWAGCVDDRR 888

Query: 1420 STSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSP 1599
            STSG+ V LG N+IS S RKQ TVSRSSTEAEY+ LA A AE++W+Q+LL EL +   S 
Sbjct: 889  STSGFAVFLGSNLISWSVRKQATVSRSSTEAEYKALANATAEVIWVQTLLKELGIQCPSM 948

Query: 1600 PVLWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVASKLLDVRFISSKDQ 1755
              LWCDNLGATYL+ NPIFHARTKHIE+ +HFVR++VA KLL++   S+ D+
Sbjct: 949  ARLWCDNLGATYLSANPIFHARTKHIEVYFHFVRERVAQKLLEIEGASAVDE 1000


>gb|AAL86510.1|AC099040_14 putative retrotransposon protein [Oryza sativa Japonica Group]
          Length = 1139

 Score =  293 bits (750), Expect = 2e-76
 Identities = 165/352 (46%), Positives = 218/352 (61%), Gaps = 10/352 (2%)
 Frame = +1

Query: 730  CKLHRSLYGLKQAPRGTTSSVPFCCKLDLLLQSV--------THLYLSTMAHMTLFICWC 885
            CKL ++LYGLKQAPR   S      +L + LQ +        T L+      +T+F+   
Sbjct: 663  CKLDKALYGLKQAPRAWYS------RLSMKLQQLGFSPSKADTSLFFYRKGSVTIFVLVY 716

Query: 886  MWMILSLQVPIPWXXXXXXXXXXXXXXXKILAPCLIFLELKRFCTSSGLFLSQQRYDHDL 1065
            +  I                         +      FL ++    S GL LSQ +Y HD+
Sbjct: 717  VDDITVASSSQDAVSSLLHNLKMDFALKDLGDLNYYFLGIEVKKISDGLVLSQDKYTHDI 776

Query: 1066 LIRAKLDGVKPIQIPLSTSGDIYSDRSTLLS--DASEYRSIVGALQYLTFTRPDLAYAVN 1239
            L R  +   KP   PLSTS  +     +LL   DA+ YRSIVGALQYLT TRPD+A+++N
Sbjct: 777  LKRIGMSTCKPAPTPLSTSEKLSVQEGSLLGPGDATNYRSIVGALQYLTLTRPDIAFSIN 836

Query: 1240 KVCQFMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRR 1419
            KVCQF+H+PT+ HW  VK I+RYL+ T   G+ ++ S S+ +  NA+ D+DWAG +DDRR
Sbjct: 837  KVCQFLHSPTLTHWSAVKRIIRYLRGTVGMGLKIQKSQSMLV--NAFSDADWAGCVDDRR 894

Query: 1420 STSGYCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSP 1599
            STSG+ V LG N+IS S RKQ TVSRSSTEAEY+ LA A AE++W+Q+LL EL +   S 
Sbjct: 895  STSGFAVFLGSNLISWSVRKQATVSRSSTEAEYKALANATAEVIWVQTLLKELGIQCPSM 954

Query: 1600 PVLWCDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVASKLLDVRFISSKDQ 1755
              LWCDNLGATYL+ NPIFHARTKHIE+ +HFVR++VA KLL++   S+ D+
Sbjct: 955  ARLWCDNLGATYLSANPIFHARTKHIEVYFHFVRERVAQKLLEIEGASAVDE 1006


>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
            sativa Japonica Group]
          Length = 1448

 Score =  293 bits (749), Expect = 3e-76
 Identities = 162/358 (45%), Positives = 226/358 (63%), Gaps = 6/358 (1%)
 Frame = +1

Query: 730  CKLHRSLYGLKQAPRGTTSSVPFCCKLDLL----LQSVTHLYLSTMAHMTLFICWCMWMI 897
            CKL+++LYGLKQAPR   S +    KL  L     ++ T L+      + +F+   +  I
Sbjct: 1080 CKLNKALYGLKQAPRAWYSRLSK--KLTELGFEASKADTSLFFLNKGGIIMFVLVYVDDI 1137

Query: 898  LSLQVPIPWXXXXXXXXXXXXXXXKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLLIRA 1077
            + +                     K L     FL ++    S+G+ L+Q++Y +D+L R 
Sbjct: 1138 I-VASSTEKATTALLKDLNKEFTLKDLGDLHYFLGIEVTKVSNGVILTQEKYANDMLKRV 1196

Query: 1078 KLDGVKPIQIPLSTSGDI--YSDRSTLLSDASEYRSIVGALQYLTFTRPDLAYAVNKVCQ 1251
             +   KP+  PLS S  +  Y       +DA++YRSIVGALQYLT TRPD+AY+VNKVCQ
Sbjct: 1197 NMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQ 1256

Query: 1252 FMHAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRSTSG 1431
            F+HAPT  HW  VK ILRYL    + G+ +  S+S  +  + Y D+D AGS+DDR+ST G
Sbjct: 1257 FLHAPTTSHWIAVKRILRYLNQCTSLGLHVHKSASTLV--HGYSDADGAGSIDDRKSTGG 1314

Query: 1432 YCV*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPPVLW 1611
            + V LG N++S SARKQ TVSRSSTEAEY+ +A   AE++W+Q++L EL + +     +W
Sbjct: 1315 FAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTVLKELGIESPKAAKIW 1374

Query: 1612 CDNLGATYLTVNPIFHARTKHIEIDYHFVRDQVASKLLDVRFISSKDQIADIFTKPLS 1785
            CDNLGA YL+ NP+FHA+TKHI +DYHFVR++V+ KLL++ F+ S DQ+AD FTK LS
Sbjct: 1375 CDNLGAKYLSANPVFHAKTKHIHVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALS 1432


>emb|CAN76473.1| hypothetical protein VITISV_016007 [Vitis vinifera]
          Length = 1002

 Score =  291 bits (746), Expect = 6e-76
 Identities = 161/369 (43%), Positives = 219/369 (59%), Gaps = 4/369 (1%)
 Frame = +1

Query: 730  CKLHRSLYGLKQAPRGTTSSVPFCCKLDLLLQSVTHLYLSTMAHMTLFICWCMW----MI 897
            CKL ++LYGLKQAPR     +         + S +   L    H   F+   ++    +I
Sbjct: 632  CKLQKALYGLKQAPRVWFHKLREALHTWGFISSTSDTSLFIYKHNGNFLLLLVYVDDLLI 691

Query: 898  LSLQVPIPWXXXXXXXXXXXXXXXKILAPCLIFLELKRFCTSSGLFLSQQRYDHDLLIRA 1077
                VP+                 K L     FL  +   T++GL L+Q +Y  DLLI+ 
Sbjct: 692  TGNNVPL---VQTLIQDLQNRFALKDLGLVKDFLGFEALRTTTGLHLTQSKYTTDLLIKT 748

Query: 1078 KLDGVKPIQIPLSTSGDIYSDRSTLLSDASEYRSIVGALQYLTFTRPDLAYAVNKVCQFM 1257
            K+   KP+  P+S +  +++      SD + YRS +GALQYLT+TRPD+A+AVNK+ Q++
Sbjct: 749  KMHSAKPVPTPMSAALKLHAASGPAFSDPTLYRSTIGALQYLTYTRPDIAFAVNKLSQYL 808

Query: 1258 HAPTVFHWGLVKHILRYLKNTPTFGIFLRPSSSLQLSFNAYVDSDWAGSLDDRRSTSGYC 1437
              PT  HW   K +LRYLK     G+   P+SSL L    Y D+DWA S+DDRRST+GYC
Sbjct: 809  QQPTELHWTACKRVLRYLKGIVHRGLHFTPASSLHLQ--VYTDADWASSIDDRRSTTGYC 866

Query: 1438 V*LGGNIISRSARKQKTVSRSSTEAEYRGLAIAIAEIMWIQSLLSELRVSTQSPPVLWCD 1617
            V LG N+ + S+RKQ  V+RSST+AEYR LA A  E+ W++SL SEL +S  + PV+WCD
Sbjct: 867  VFLGTNLFTWSSRKQPVVARSSTKAEYRALAHASXEVAWLRSLFSELGISLVNTPVIWCD 926

Query: 1618 NLGATYLTVNPIFHARTKHIEIDYHFVRDQVASKLLDVRFISSKDQIADIFTKPLSKDRF 1797
            N GA  L  NP+FH+RTKHIE+D  +VR+QV  K L V ++ S +Q AD+FTKPLS  RF
Sbjct: 927  NQGAGALAANPVFHSRTKHIEVDVXYVREQVLDKKLVVSYVPSVEQXADLFTKPLSIPRF 986

Query: 1798 SLLRFKLTV 1824
              L  KL +
Sbjct: 987  QYLLTKLNL 995