BLASTX nr result
ID: Papaver27_contig00000538
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver27_contig00000538
(5277 letters)
Database: ./nr
38,876,450 sequences; 13,856,398,315 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 2921 0.0
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su... 2851 0.0
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 2851 0.0
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su... 2836 0.0
ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [A... 2833 0.0
ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prun... 2833 0.0
ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II su... 2832 0.0
ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II su... 2832 0.0
ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II su... 2832 0.0
ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II su... 2832 0.0
ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citr... 2832 0.0
ref|XP_006383037.1| DNA-directed RNA polymerase II largest subun... 2826 0.0
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun... 2823 0.0
ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II su... 2807 0.0
ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 ... 2806 0.0
ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II su... 2804 0.0
ref|XP_007157862.1| hypothetical protein PHAVU_002G104500g [Phas... 2803 0.0
ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II su... 2801 0.0
ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II su... 2800 0.0
ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II su... 2800 0.0
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 2921 bits (7573), Expect = 0.0
Identities = 1441/1535 (93%), Positives = 1489/1535 (97%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMRCVCFNCSKILADEEDHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 767
FKQ+Q+I+NPK+RL+K+LDACKNK+KC+GGDEI+ Q D ++PVKKSRGGCGAQQPKLTI
Sbjct: 121 FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180
Query: 768 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 947
EGMKMIAEYKIQRKK DDPEQLPEPVERKQQL+AERVL+VLKRISDEDCILLGLNPKYAR
Sbjct: 181 EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240
Query: 948 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 1127
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 1128 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1307
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1308 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1487
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1488 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1667
EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1668 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1847
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1848 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 2027
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2028 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 2207
LLRTSAWHSE+ETGFITPGDTQVRIE+GELL GTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2208 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSL 2387
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADA+TMEKIN+TISKAKNEVK+LIR AQE+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720
Query: 2388 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2567
E EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2568 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2747
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2748 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2927
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2928 LDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQ 3107
LDSLKMKK EFD+V+++E DD+NW P+YM ++VEDLK IREFR+VFDAEV+KL DR Q
Sbjct: 901 LDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 960
Query: 3108 LGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVP 3287
LGTEI TTGDNSWPMPVNL+RLIWNAQKTFKVD RRPSDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 3288 GDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAPG 3467
GDD +SMEAQKNATLFFNILLRSTFASKRVLKE+ LTREAF+WVIGE+ESRFLQSLVAPG
Sbjct: 1021 GDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 3468 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 3648 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDEEV 3827
P+V+KTKERAKNVQCALEYTTLRSVTQATEVWYDPDPM TIIEED+DFVKSYYEMPDEEV
Sbjct: 1141 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 3828 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 4007
APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 4008 NDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGFKP 4187
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVN+FDE EGFKP
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320
Query: 4188 EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4367
EVEWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 4368 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4547
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF 1440
Query: 4548 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMGTP 4727
LRGVTENIMLGQLAPIGTGDC+LYLNDQMLQ AIELQLPSYMEGLDFGMTPSRSPI GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPITGTP 1500
Query: 4728 YHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 4832
YH+GMMSPNYLLSPN R SPI+DAQFSPYVGGMAF
Sbjct: 1501 YHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535
>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 2851 bits (7391), Expect = 0.0
Identities = 1407/1535 (91%), Positives = 1470/1535 (95%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GLSD RLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VL+IMR VCFNCSKIL DEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 767
FKQ+ RIKNPK+RLRK+LDACKNKTKC+GGDEIDVQ +D ++PVKKSRGGCGAQQPK++I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 768 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 947
EGMKM AEYK QRKK DDPEQLPEPVERKQ LTAERVL +LKRI+DEDC LLGLNPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 948 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 1127
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 1128 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1307
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1308 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1487
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1488 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1667
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1668 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1847
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1848 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 2027
LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAP ILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 2028 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 2207
L RTSAWHSE+ETG ITPGDT VRIE+GELL+GTLCKKALGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 2208 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSL 2387
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TMEKIN+TIS AKNEVK+LI+ AQE+SL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 2388 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2567
EPEPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2568 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2747
ACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2748 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2927
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2928 LDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQ 3107
LDSLKMKK EF++++R+EF+D+NW PNYM ++VEDLK IREFR+VF+AEV+KL DR Q
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 3108 LGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVP 3287
LGTEI TTG+NSWPMPVNL+RLI NAQKTFK+D RR SDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 3288 GDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAPG 3467
G+D +S+EAQKNATLFFNILLRSTFASKRVL E+ LTREAF+WVIGE+ESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 3468 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 3648 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDEEV 3827
PE NKTKERAK VQCALEYTTLRSVTQATEVWYDPDPM TIIEEDIDFVKSYYEMPDEE+
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 3828 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 4007
APEKISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 4008 NDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGFKP 4187
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVN+FDE+EGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 4188 EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4367
E+EWMLDTEGVNLLAVM HEDVDA RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 4368 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4547
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 4548 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMGTP 4727
LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSY++GLDFGMTPSRSPI GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
Query: 4728 YHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 4832
YHEGMMSPNYLLSPN R SPISDAQFSPYVGGMAF
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 2851 bits (7391), Expect = 0.0
Identities = 1407/1535 (91%), Positives = 1470/1535 (95%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GLSD RLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VL+IMR VCFNCSKIL DEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 767
FKQ+ RIKNPK+RLRK+LDACKNKTKC+GGDEIDVQ +D ++PVKKSRGGCGAQQPK++I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 768 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 947
EGMKM AEYK QRKK DDPEQLPEPVERKQ LTAERVL +LKRI+DEDC LLGLNPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 948 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 1127
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 1128 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1307
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1308 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1487
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1488 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1667
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1668 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1847
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1848 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 2027
LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+PAP ILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 2028 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 2207
L RTSAWHSE+ETG ITPGDT VRIE+GELL+GTLCKKALGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 2208 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSL 2387
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TMEKIN+TIS AKNEVK+LI+ AQE+SL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 2388 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2567
EPEPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2568 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2747
ACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2748 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2927
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2928 LDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQ 3107
LDSLKMKK EF++++R+EF+D+NW PNYM ++VEDLK IREFR+VF+AEV+KL DR Q
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 3108 LGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVP 3287
LGTEI TTG+NSWPMPVNL+RLI NAQKTFK+D RR SDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 3288 GDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAPG 3467
G+D +S+EAQKNATLFFNILLRSTFASKRVL E+ LTREAF+WVIGE+ESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 3468 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 3648 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDEEV 3827
PE NKTKERAK VQCALEYTTLRSVTQATEVWYDPDPM TIIEEDIDFVKSYYEMPDEE+
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 3828 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 4007
APEKISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 4008 NDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGFKP 4187
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVN+FDE+EGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 4188 EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4367
E+EWMLDTEGVNLLAVM HEDVDA RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 4368 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4547
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 4548 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMGTP 4727
LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSY++GLDFGMTPSRSPI GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
Query: 4728 YHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 4832
YHEGMMSPNYLLSPN R SPISDAQFSPYVGGMAF
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Fragaria
vesca subsp. vesca]
Length = 1842
Score = 2836 bits (7353), Expect = 0.0
Identities = 1398/1535 (91%), Positives = 1464/1535 (95%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MD+RFPFSP EVAKVR VQFGILSPDEIRQMSVVQIEHSET GKPK GLSD RLGTI
Sbjct: 1 MDIRFPFSPCEVAKVRRVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMRCVCFNCSKIL DE+DHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 767
FK + RIKNPK+RL+K+LDACKNKTKC+GGDEIDVQD D +P+KKSRGGCGAQQPKLTI
Sbjct: 121 FKTALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQDTD--EPLKKSRGGCGAQQPKLTI 178
Query: 768 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 947
+GMKM+AEYK QRKK+DD EQLPEPVERKQ LTAERVLSVLKRISDEDC LLGLNPKYAR
Sbjct: 179 DGMKMVAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKYAR 238
Query: 948 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 1127
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNG+PAHIIS
Sbjct: 239 PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 298
Query: 1128 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1307
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 299 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 358
Query: 1308 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1487
TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 359 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 418
Query: 1488 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1667
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 419 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 478
Query: 1668 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1847
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 479 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 538
Query: 1848 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 2027
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 539 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 598
Query: 2028 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 2207
L RTSAWHSE+ETG ITPGDT VRIE+GELL+GTLCKKALGTSTGSLIHVIWEEVGPDAA
Sbjct: 599 LQRTSAWHSESETGNITPGDTHVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 658
Query: 2208 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSL 2387
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TMEKIN+TISKAKNEVK+LI AQ KSL
Sbjct: 659 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKELISKAQSKSL 718
Query: 2388 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2567
EPEPGRTMM+SFEN+VNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 719 EPEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 778
Query: 2568 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2747
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 779 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 838
Query: 2748 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2927
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 839 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 898
Query: 2928 LDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQ 3107
LDSLKMKK EFDK + + FDD+NW P+YM ++VEDLK IREFR+VFDAEV KL DRLQ
Sbjct: 899 LDSLKMKKKEFDKTFAYVFDDENWNPDYMLPEHVEDLKTIREFRNVFDAEVSKLETDRLQ 958
Query: 3108 LGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVP 3287
LGTEI TGDNSWP+PVNL+RLIWNAQKTFK+D RR SDMHPMEIVEAIDKLQERL+VVP
Sbjct: 959 LGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLRVVP 1018
Query: 3288 GDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAPG 3467
GDD +S+EAQKNATLFFNILLRSTFASKRVL+E+ LTREAF+WVIGE+ESRFLQSLVAPG
Sbjct: 1019 GDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESRFLQSLVAPG 1078
Query: 3468 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1079 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1138
Query: 3648 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDEEV 3827
PE NKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPM T+IEED+DFV+SYYEMPDEEV
Sbjct: 1139 PEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDLDFVRSYYEMPDEEV 1198
Query: 3828 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 4007
P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFD DLTCIFNDDNAEKLILRIRIM
Sbjct: 1199 NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDGDLTCIFNDDNAEKLILRIRIM 1258
Query: 4008 NDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGFKP 4187
N+E PKG+S DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVN+FD++EGFK
Sbjct: 1259 NEETPKGDSQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDQNEGFKA 1318
Query: 4188 EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4367
E EWMLDTEGVNLLAV+CH+DVDA RTTSNHLIE+IEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1319 EQEWMLDTEGVNLLAVLCHDDVDAKRTTSNHLIEIIEVLGIEAVRRSLLDELRVVISFDG 1378
Query: 4368 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4547
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA+V+AETDH
Sbjct: 1379 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDASVFAETDH 1438
Query: 4548 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMGTP 4727
LRGVTENIMLGQLAPIGTGDC+LYLND+ML+ AIELQLPSY++GLDFGMTPSRSP+ GTP
Sbjct: 1439 LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYVDGLDFGMTPSRSPVSGTP 1498
Query: 4728 YHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 4832
+ +GMMSPNYLLSPN R SPISDAQFSPYVGGMAF
Sbjct: 1499 FRDGMMSPNYLLSPNMRMSPISDAQFSPYVGGMAF 1533
>ref|XP_006828844.1| hypothetical protein AMTR_s00001p00152770 [Amborella trichopoda]
gi|548833823|gb|ERM96260.1| hypothetical protein
AMTR_s00001p00152770 [Amborella trichopoda]
Length = 1844
Score = 2833 bits (7345), Expect = 0.0
Identities = 1398/1538 (90%), Positives = 1474/1538 (95%), Gaps = 3/1538 (0%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MDMRFP+SPAEVAKVR+VQFGILSP+EIR MSVV+I+HSET ERGKPKP GLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRVVQFGILSPEEIRNMSVVEIQHSETMERGKPKPSGLSDPRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRKMKC+TCTANMAECPGHFGHLELAKPMFHIGF+K VLSIMRCVCFNCS+ILADEEDH+
Sbjct: 61 DRKMKCDTCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSRILADEEDHR 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDV-QDEDLEKPVKKSR-GGCGAQQPKL 761
FKQ+ +I+NPK RL+KVLD CKNKTKC+GGD+ID Q +D E+ VKK R GGCGAQQPK+
Sbjct: 121 FKQALKIRNPKTRLKKVLDCCKNKTKCEGGDDIDEDQAQDSEEVVKKKRHGGCGAQQPKI 180
Query: 762 TIEGMKMIAEYKIQRKKTDDPEQ-LPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPK 938
TIEGMKM+AEYK+ RKK D+ EQ LPEPVERKQQL AE+VL+VLKRI+DEDC LLGLNPK
Sbjct: 181 TIEGMKMVAEYKLPRKKNDEQEQMLPEPVERKQQLAAEKVLNVLKRITDEDCQLLGLNPK 240
Query: 939 YARPDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAH 1118
YARPDWMILQV+ SVMMDTS+RSEDDLTHQLAM+IRHNENL++QE+NGAPAH
Sbjct: 241 YARPDWMILQVMPIPPPPVRPSVMMDTSSRSEDDLTHQLAMVIRHNENLKRQEKNGAPAH 300
Query: 1119 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 1298
IISEFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF
Sbjct: 301 IISEFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 360
Query: 1299 SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKY 1478
SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKY
Sbjct: 361 SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 420
Query: 1479 IIREDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 1658
IIREDGQRLDLRYLKKS DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP
Sbjct: 421 IIREDGQRLDLRYLKKSGDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 480
Query: 1659 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 1838
YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV
Sbjct: 481 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 540
Query: 1839 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPK 2018
QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+PAP ILKPRPLWTGKQVFNLIIPK
Sbjct: 541 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPK 600
Query: 2019 QINLLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGP 2198
QINL+R SAWHSE+E+GFITPGDT VRIERGELL+GTLCKK LGTS+GSLIHVIWEEVGP
Sbjct: 601 QINLIRYSAWHSESESGFITPGDTCVRIERGELLSGTLCKKTLGTSSGSLIHVIWEEVGP 660
Query: 2199 DAARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQE 2378
DAARKFLGHTQWLVNYWLLQ FSIGIGDTIADA+TMEKIN+TISKAKNEVK+LI+ AQE
Sbjct: 661 DAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQE 720
Query: 2379 KSLEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 2558
K LE EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS
Sbjct: 721 KQLEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 780
Query: 2559 QMTACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 2738
QMTACVGQQNVEGKRIP+GF DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 781 QMTACVGQQNVEGKRIPFGFNDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 840
Query: 2739 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 2918
GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE
Sbjct: 841 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE 900
Query: 2919 SQKLDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADD 3098
SQKLDSLKMK+ EF+ VY++E D +NW+P+YM ++VEDLK IREF++VFDAEV+KL D
Sbjct: 901 SQKLDSLKMKRAEFENVYKYEIDQENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEAD 960
Query: 3099 RLQLGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLK 3278
R QLGTEITTTGDNSWPMPVNL+RLIWNAQK FKVD RRPSDMHPMEIVEA+DKLQERLK
Sbjct: 961 RHQLGTEITTTGDNSWPMPVNLKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLK 1020
Query: 3279 VVPGDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLV 3458
VVPGDD MS+EAQKNATLFFNILLRSTFASKRVLKE+ LTREAFDWVIGE+ESRFLQSLV
Sbjct: 1021 VVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLV 1080
Query: 3459 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 3638
APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV
Sbjct: 1081 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1140
Query: 3639 YLKPEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPD 3818
YLK EVNKTKE+AKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEED+DFV+SYYEMPD
Sbjct: 1141 YLKHEVNKTKEKAKNVQCALEYTTLRSVTEATEVWYDPDPMSTIIEEDVDFVRSYYEMPD 1200
Query: 3819 EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 3998
EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI
Sbjct: 1201 EEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRI 1260
Query: 3999 RIMNDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEG 4178
RIMNDEAPKGE DES+EDDVFLKKIESNMLTEMALRGIPDINKVFIKSGK+N+FDE+EG
Sbjct: 1261 RIMNDEAPKGELQDESSEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKINKFDENEG 1320
Query: 4179 FKPEVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVIS 4358
FKPE+EWMLDTEGVNLLAVMC+E+VDATRTTSNHLIEVI+VLGIEAVRR+LLDELRVVIS
Sbjct: 1321 FKPEIEWMLDTEGVNLLAVMCNEEVDATRTTSNHLIEVIQVLGIEAVRRALLDELRVVIS 1380
Query: 4359 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 4538
FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE
Sbjct: 1381 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE 1440
Query: 4539 TDHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIM 4718
DHLRGVTENIMLGQLAPIGTGDC+LYLNDQMLQQAIELQLPSYMEG+DFGMTPSRSP+
Sbjct: 1441 ADHLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGMDFGMTPSRSPMT 1500
Query: 4719 GTPYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 4832
GTPYHEGMMSP YLLSPN RSSPI+DAQFSPYVGGMAF
Sbjct: 1501 GTPYHEGMMSP-YLLSPNMRSSPITDAQFSPYVGGMAF 1537
>ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
gi|462398589|gb|EMJ04257.1| hypothetical protein
PRUPE_ppa000093mg [Prunus persica]
Length = 1844
Score = 2833 bits (7343), Expect = 0.0
Identities = 1401/1535 (91%), Positives = 1460/1535 (95%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MD+RFPFSPAEVAKVR VQFGILSPDEIRQMSVVQIEHSET GKPK GLSD RLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRCVQFGILSPDEIRQMSVVQIEHSETMLGGKPKTAGLSDPRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMRCVCFNCSKIL DE+DHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDDHK 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 767
FKQ+ RIK+PK+RL+K+LDACKNKTKCDGGDEIDVQ ++ E+PVKKSRGGCGAQQPKL+I
Sbjct: 121 FKQALRIKSPKNRLKKILDACKNKTKCDGGDEIDVQGQESEEPVKKSRGGCGAQQPKLSI 180
Query: 768 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 947
EGMKM AEYK QRKK+DD EQLPEPVERKQ LTAERVLSVLKRISDED LLGLNPKYAR
Sbjct: 181 EGMKMNAEYKAQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDSQLLGLNPKYAR 240
Query: 948 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 1127
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPQPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 1128 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1307
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1308 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1487
TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPP GKTGAKYIIR
Sbjct: 361 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 420
Query: 1488 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1667
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1668 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1847
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1848 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 2027
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2028 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 2207
L RTSAWHSE E+G ITPGDT VRIE+GELL GTLCKKALGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LQRTSAWHSEAESGNITPGDTFVRIEKGELLAGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 2208 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSL 2387
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TMEKIN+TISKAKNEVKDLI AQ K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKNEVKDLISKAQSKQL 720
Query: 2388 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2567
E EPGRTMM+SFEN+VNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENKVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2568 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2747
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2748 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2927
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2928 LDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQ 3107
LDSLKMKK EFDK + +E DD+NW P+YM ++VEDLK IREFR+VFDAEV+KL DRLQ
Sbjct: 901 LDSLKMKKSEFDKTFSYELDDENWNPDYMLHEHVEDLKTIREFRNVFDAEVQKLETDRLQ 960
Query: 3108 LGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVP 3287
LGTEI TGDNSWP+PVNL+RLIWNAQKTFK+D RR SDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961 LGTEIAVTGDNSWPLPVNLKRLIWNAQKTFKIDFRRTSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 3288 GDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAPG 3467
GDD +S+EAQKNATLFF+ILLRSTFASKRVL E+ LTREAF+WVIGE+ESRFLQSLVAPG
Sbjct: 1021 GDDLLSVEAQKNATLFFSILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 3468 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 3648 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDEEV 3827
PE NKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPM TIIEED+DFV SYYEMPDEEV
Sbjct: 1141 PEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNSYYEMPDEEV 1200
Query: 3828 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 4007
P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 4008 NDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGFKP 4187
N EAPKGE +DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVN+FD +EGFK
Sbjct: 1261 NAEAPKGELVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNKFDPNEGFKA 1320
Query: 4188 EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4367
E EWMLDTEGVNLLAV+CH+DVDA RTTSNHLIE++E+LGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDELRVVISFDG 1380
Query: 4368 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4547
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDY 1440
Query: 4548 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMGTP 4727
LRGVTENIMLGQLAPIGTGDC+LYLND+ML+ AIELQLPSYM+GLDFGMTPSRSP+ GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTPSRSPVSGTP 1500
Query: 4728 YHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 4832
YHEGMMSPNYLLSPN R SPISDAQFSPYVGGMAF
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_006467031.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X5
[Citrus sinensis]
Length = 1963
Score = 2832 bits (7342), Expect = 0.0
Identities = 1385/1535 (90%), Positives = 1462/1535 (95%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMR VCFNCSKILADE+DHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 767
FKQ+ +I+NPK+RL+K+LDACKNKTKC+GGDEIDV +D E+P+KK++GGCGAQQPKLTI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 768 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 947
EGMKMIAEYK QRKK DD EQLPEPVERKQ LTAERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 948 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 1127
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 1128 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1307
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1308 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1487
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1488 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1667
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1668 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1847
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1848 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 2027
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP PTILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2028 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 2207
L RT+AWH++N+ G +T GDT VRIE+GELL+GTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2208 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSL 2387
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME INDTISKAKN VK+LI+ AQ+KSL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 2388 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2567
EPEPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2568 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2747
ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2748 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2927
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 2928 LDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQ 3107
LDSLKMKK EFDK +RFE D++NW PNYM +Y++DLK I+E R VFDAEV+KL DR Q
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 3108 LGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVP 3287
L TEI T+GD+SWP+PVNL+RLIWNAQKTFKVDPRRPSDMHPME+VEA+DKLQERLKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 3288 GDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAPG 3467
G+D +S+EAQKNATLFFNILLRSTFASKRVLKEH LTREAF+WVIGE+ESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 3468 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 3648 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDEEV 3827
P VN TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPMGTIIEED++FVKSYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 3828 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 4007
APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 4008 NDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGFKP 4187
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK ++D++EGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 4188 EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4367
E EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 4368 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4547
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 4548 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMGTP 4727
LRGVTENIMLGQLAPIGTGDCSLYLND+ML+ AIELQLPSYMEGL+FGMTP+RSP+ GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1500
Query: 4728 YHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 4832
YH+GMMSP YL SPN R SP++DAQFSPYVGGMAF
Sbjct: 1501 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>ref|XP_006467030.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X4
[Citrus sinensis]
Length = 1853
Score = 2832 bits (7342), Expect = 0.0
Identities = 1385/1535 (90%), Positives = 1462/1535 (95%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMR VCFNCSKILADE+DHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 767
FKQ+ +I+NPK+RL+K+LDACKNKTKC+GGDEIDV +D E+P+KK++GGCGAQQPKLTI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 768 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 947
EGMKMIAEYK QRKK DD EQLPEPVERKQ LTAERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 948 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 1127
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 1128 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1307
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1308 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1487
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1488 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1667
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1668 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1847
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1848 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 2027
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP PTILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2028 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 2207
L RT+AWH++N+ G +T GDT VRIE+GELL+GTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2208 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSL 2387
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME INDTISKAKN VK+LI+ AQ+KSL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 2388 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2567
EPEPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2568 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2747
ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2748 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2927
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 2928 LDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQ 3107
LDSLKMKK EFDK +RFE D++NW PNYM +Y++DLK I+E R VFDAEV+KL DR Q
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 3108 LGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVP 3287
L TEI T+GD+SWP+PVNL+RLIWNAQKTFKVDPRRPSDMHPME+VEA+DKLQERLKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 3288 GDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAPG 3467
G+D +S+EAQKNATLFFNILLRSTFASKRVLKEH LTREAF+WVIGE+ESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 3468 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 3648 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDEEV 3827
P VN TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPMGTIIEED++FVKSYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 3828 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 4007
APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 4008 NDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGFKP 4187
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK ++D++EGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 4188 EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4367
E EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 4368 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4547
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 4548 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMGTP 4727
LRGVTENIMLGQLAPIGTGDCSLYLND+ML+ AIELQLPSYMEGL+FGMTP+RSP+ GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1500
Query: 4728 YHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 4832
YH+GMMSP YL SPN R SP++DAQFSPYVGGMAF
Sbjct: 1501 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>ref|XP_006467029.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X3
[Citrus sinensis]
Length = 1790
Score = 2832 bits (7342), Expect = 0.0
Identities = 1385/1535 (90%), Positives = 1462/1535 (95%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMR VCFNCSKILADE+DHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 767
FKQ+ +I+NPK+RL+K+LDACKNKTKC+GGDEIDV +D E+P+KK++GGCGAQQPKLTI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 768 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 947
EGMKMIAEYK QRKK DD EQLPEPVERKQ LTAERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 948 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 1127
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 1128 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1307
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1308 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1487
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1488 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1667
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1668 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1847
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1848 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 2027
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP PTILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2028 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 2207
L RT+AWH++N+ G +T GDT VRIE+GELL+GTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2208 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSL 2387
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME INDTISKAKN VK+LI+ AQ+KSL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 2388 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2567
EPEPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2568 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2747
ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2748 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2927
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 2928 LDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQ 3107
LDSLKMKK EFDK +RFE D++NW PNYM +Y++DLK I+E R VFDAEV+KL DR Q
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 3108 LGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVP 3287
L TEI T+GD+SWP+PVNL+RLIWNAQKTFKVDPRRPSDMHPME+VEA+DKLQERLKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 3288 GDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAPG 3467
G+D +S+EAQKNATLFFNILLRSTFASKRVLKEH LTREAF+WVIGE+ESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 3468 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 3648 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDEEV 3827
P VN TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPMGTIIEED++FVKSYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 3828 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 4007
APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 4008 NDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGFKP 4187
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK ++D++EGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 4188 EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4367
E EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 4368 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4547
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 4548 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMGTP 4727
LRGVTENIMLGQLAPIGTGDCSLYLND+ML+ AIELQLPSYMEGL+FGMTP+RSP+ GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1500
Query: 4728 YHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 4832
YH+GMMSP YL SPN R SP++DAQFSPYVGGMAF
Sbjct: 1501 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>ref|XP_006467027.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like isoform X1
[Citrus sinensis] gi|568825318|ref|XP_006467028.1|
PREDICTED: DNA-directed RNA polymerase II subunit 1-like
isoform X2 [Citrus sinensis]
Length = 1860
Score = 2832 bits (7342), Expect = 0.0
Identities = 1385/1535 (90%), Positives = 1462/1535 (95%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMR VCFNCSKILADE+DHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 767
FKQ+ +I+NPK+RL+K+LDACKNKTKC+GGDEIDV +D E+P+KK++GGCGAQQPKLTI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
Query: 768 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 947
EGMKMIAEYK QRKK DD EQLPEPVERKQ LTAERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 948 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 1127
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 1128 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1307
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1308 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1487
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1488 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1667
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1668 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1847
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1848 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 2027
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP PTILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2028 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 2207
L RT+AWH++N+ G +T GDT VRIE+GELL+GTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2208 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSL 2387
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME INDTISKAKN VK+LI+ AQ+KSL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 2388 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2567
EPEPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2568 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2747
ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2748 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2927
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 2928 LDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQ 3107
LDSLKMKK EFDK +RFE D++NW PNYM +Y++DLK I+E R VFDAEV+KL DR Q
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 3108 LGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVP 3287
L TEI T+GD+SWP+PVNL+RLIWNAQKTFKVDPRRPSDMHPME+VEA+DKLQERLKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 3288 GDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAPG 3467
G+D +S+EAQKNATLFFNILLRSTFASKRVLKEH LTREAF+WVIGE+ESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 3468 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 3648 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDEEV 3827
P VN TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPMGTIIEED++FVKSYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 3828 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 4007
APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 4008 NDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGFKP 4187
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK ++D++EGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 4188 EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4367
E EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 4368 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4547
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 4548 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMGTP 4727
LRGVTENIMLGQLAPIGTGDCSLYLND+ML+ AIELQLPSYMEGL+FGMTP+RSP+ GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1500
Query: 4728 YHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 4832
YH+GMMSP YL SPN R SP++DAQFSPYVGGMAF
Sbjct: 1501 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>ref|XP_006425357.1| hypothetical protein CICLE_v10024686mg [Citrus clementina]
gi|557527347|gb|ESR38597.1| hypothetical protein
CICLE_v10024686mg [Citrus clementina]
Length = 1860
Score = 2832 bits (7341), Expect = 0.0
Identities = 1385/1535 (90%), Positives = 1461/1535 (95%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMR VCFNCSKILADE+DHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 767
FKQ+ +I+NPK+RL+K+LDACKNKTKC+GGDEIDV +D E+P+KK +GGCGAQQPKLTI
Sbjct: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKKKGGCGAQQPKLTI 180
Query: 768 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 947
EGMKMIAEYK QRKK DD EQLPEPVERKQ LTAERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 948 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 1127
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 1128 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1307
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1308 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1487
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1488 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1667
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1668 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1847
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1848 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 2027
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP PTILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2028 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 2207
L RT+AWH++N+ G +T GDT VRIE+GELL+GTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2208 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSL 2387
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME INDTISKAKN VK+LI+ AQ+KSL
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 720
Query: 2388 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2567
EPEPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2568 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2747
ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2748 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2927
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 900
Query: 2928 LDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQ 3107
LDSLKMKK EFDK +RFE D++NW PNYM +Y++DLK I+E R VFDAEV+KL DR Q
Sbjct: 901 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 960
Query: 3108 LGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVP 3287
L TEI T+GD+SWP+PVNL+RLIWNAQKTFKVDPRRPSDMHPME+VEA+DKLQERLKVVP
Sbjct: 961 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1020
Query: 3288 GDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAPG 3467
G+D +S+EAQKNATLFFNILLRSTFASKRVLKEH LTREAF+WVIGE+ESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 3468 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1140
Query: 3648 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDEEV 3827
P VN TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPMGTIIEED++FVKSYYEMPDE++
Sbjct: 1141 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1200
Query: 3828 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 4007
APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1260
Query: 4008 NDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGFKP 4187
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GK ++D++EGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKKGKTTKYDDNEGFKS 1320
Query: 4188 EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4367
E EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EDEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 4368 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4547
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1440
Query: 4548 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMGTP 4727
LRGVTENIMLGQLAPIGTGDCSLYLND+ML+ AIELQLPSYMEGL+FGMTP+RSP+ GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1500
Query: 4728 YHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 4832
YH+GMMSP YL SPN R SP++DAQFSPYVGGMAF
Sbjct: 1501 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1535
>ref|XP_006383037.1| DNA-directed RNA polymerase II largest subunit family protein
[Populus trichocarpa] gi|550338614|gb|ERP60834.1|
DNA-directed RNA polymerase II largest subunit family
protein [Populus trichocarpa]
Length = 1837
Score = 2826 bits (7325), Expect = 0.0
Identities = 1399/1538 (90%), Positives = 1463/1538 (95%), Gaps = 3/1538 (0%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSV+QIEHSETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVIQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMRCVCFNCSKILADEEDHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 767
FKQ+ +IKNPK RL+K+LDACKNKTKC+GGDEIDVQ +D E+PVKKSRGGCGAQQPKLTI
Sbjct: 121 FKQALKIKNPKSRLKKILDACKNKTKCEGGDEIDVQGQDNEEPVKKSRGGCGAQQPKLTI 180
Query: 768 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 947
EGMKMIAEYK+QRKK+DD EQLPEPVERKQ LTAERVLSVLKRISDEDC LLGL+PKYAR
Sbjct: 181 EGMKMIAEYKVQRKKSDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLDPKYAR 240
Query: 948 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 1127
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENLR+QER+GAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERSGAPAHIIS 300
Query: 1128 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1307
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1308 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1487
TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1488 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1667
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1668 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1847
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1848 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 2027
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTI+KPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTIVKPRPLWTGKQVFNLIIPKQIN 600
Query: 2028 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 2207
L+RT+AWH ++E G ITPGDT VRIE+GELL+GTLCKK LGTS+GSLIHVIWEEVGPDAA
Sbjct: 601 LIRTAAWHMDSERGMITPGDTLVRIEKGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAA 660
Query: 2208 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSL 2387
RKFLGHTQWLVNYWLLQN FSIGIGDTIADASTMEKIN+TIS AKNEVKDLIR AQ K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEKINETISNAKNEVKDLIRKAQNKEL 720
Query: 2388 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2567
E EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2568 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2747
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2748 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2927
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900
Query: 2928 LDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQ 3107
LDSLKMKK EFD+V+R+EFDD++W P YM +D+VEDL+NIRE R VFDAEV+KL DR Q
Sbjct: 901 LDSLKMKKAEFDRVFRYEFDDEDWNPTYMMTDHVEDLRNIRELRDVFDAEVQKLEADRYQ 960
Query: 3108 LGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPR--RPSDMHPMEIVEAIDKLQERLKV 3281
LGTEI TTGDN+WPMPVNL+RLIWNAQKTFK+D R R SD+HPME VEA+DKLQERLKV
Sbjct: 961 LGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDTRIGRVSDIHPMEAVEAVDKLQERLKV 1020
Query: 3282 VPGDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVA 3461
VPGDD +S+EAQKNATLFF ILLRST ASKRVL+E+ L+REAFDWVIGE+ESRFLQSLVA
Sbjct: 1021 VPGDDLLSVEAQKNATLFFGILLRSTLASKRVLQEYRLSREAFDWVIGEIESRFLQSLVA 1080
Query: 3462 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 3641
PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY
Sbjct: 1081 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVY 1140
Query: 3642 LKPEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDE 3821
LKPE NKTKE+AKNVQCALEYTTLRSVTQATEVWYDPDPM TIIEED DFVKSYYEMPDE
Sbjct: 1141 LKPEFNKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDE 1200
Query: 3822 EVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIR 4001
EVAPEKISPWLLRIELNREMM+DKKL+MADIAEKIN EFDDDLTCIFNDDNAEKLILRIR
Sbjct: 1201 EVAPEKISPWLLRIELNREMMIDKKLNMADIAEKINHEFDDDLTCIFNDDNAEKLILRIR 1260
Query: 4002 IMNDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGF 4181
IMNDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ KV+ FDE EGF
Sbjct: 1261 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNAKVSSFDESEGF 1320
Query: 4182 KPEVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISF 4361
K EWMLDTEGVNLLAVMC+E+VDA +TTSNHLIEVIEV+GIEAVRRSLLDELRVVISF
Sbjct: 1321 KTTEEWMLDTEGVNLLAVMCNENVDARKTTSNHLIEVIEVIGIEAVRRSLLDELRVVISF 1380
Query: 4362 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 4541
DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET
Sbjct: 1381 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAET 1440
Query: 4542 DHLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMG 4721
D+LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSYMEGLDFGMTP+RSP+ G
Sbjct: 1441 DYLRGVTENIMLGQLAPIGTGYCALYLNDEMLKNAIELQLPSYMEGLDFGMTPARSPVSG 1500
Query: 4722 TPYHEGMMSPNYLLSPNARSSPISD-AQFSPYVGGMAF 4832
TPYH+GMMSP L+SPN R SP D FSPYVGGMAF
Sbjct: 1501 TPYHDGMMSP-MLMSPNLRMSPTVDGVAFSPYVGGMAF 1537
>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 2823 bits (7319), Expect = 0.0
Identities = 1385/1535 (90%), Positives = 1459/1535 (95%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIE SETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGF+K VLSIMRCVCFNCSKILADEEDHK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 767
FKQ+ +IKNPK+RL+K+LDACKNKTKC+GGD+IDV +D ++PVKKSRGGCGAQQP++TI
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180
Query: 768 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 947
EGMKMIAEYK QRKK DD EQLPEPVERKQ LTAERVL VLKRISD+DC LLG NPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR 240
Query: 948 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 1127
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENL+KQE+ GAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS 300
Query: 1128 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1307
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1308 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1487
TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1488 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1667
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1668 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1847
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1848 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 2027
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2028 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 2207
L+RT+AWHS++E G ITPGDT VRIE+GELL+GT+CKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2208 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSL 2387
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADA+TMEKIN+TIS AKN VK+LIR AQ K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKEL 720
Query: 2388 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2567
EP+PGRTMMESFEN VNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2568 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2747
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2748 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2927
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2928 LDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQ 3107
LDSLKMKK EFD+V+++E DD+NW P YM D+++DLKNIRE R VFDAEV+KL DR Q
Sbjct: 901 LDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQ 960
Query: 3108 LGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVP 3287
LGTEI TTGD+SWP+PVNLRRLIWNAQKTFKVD RRPSD+HPME VEA+DKLQERLKVVP
Sbjct: 961 LGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVP 1020
Query: 3288 GDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAPG 3467
GDD +S+EAQKNATLFF ILLRST ASKRVL+++ LTREAFDWVIGE+ESRFLQSLVAPG
Sbjct: 1021 GDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPG 1080
Query: 3468 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS++L
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLI 1140
Query: 3648 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDEEV 3827
PE NKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPM TIIEED+DFVKSYYEMPDEE+
Sbjct: 1141 PECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1200
Query: 3828 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 4007
+PEKISPWLLRIELNREMMVDKKL+MADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 SPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 4008 NDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGFKP 4187
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK KV++FDE+EGFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEGFKT 1320
Query: 4188 EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4367
EWMLDTEGVNLLAVMC+E+VDA RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 IEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 4368 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4547
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADY 1440
Query: 4548 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMGTP 4727
LRGVTENIMLGQLAPIGTGDC+LYLND ML+ AIELQLPSYM+GLDFGMTP+RSP+ TP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMDGLDFGMTPARSPVSVTP 1500
Query: 4728 YHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 4832
YH+GMMSP+YLLSP+ R SP +DAQFSPYV GM F
Sbjct: 1501 YHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPF 1535
>ref|XP_006590737.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Glycine
max]
Length = 1827
Score = 2807 bits (7277), Expect = 0.0
Identities = 1385/1535 (90%), Positives = 1456/1535 (94%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MD+RFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GGLSD RLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGF+K VL+IMRCVCFNCSKILADE DHK
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 767
FKQ+ RI+NPK+RL+K+LDACKNK+KC+GGDEID+ +D ++PVKKSRGGCGAQQPK+TI
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180
Query: 768 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 947
EGMKMIAEYK QRKK+DD EQLPEPVERKQ L+AERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 948 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 1127
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENL++QERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 1128 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1307
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1308 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1487
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1488 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1667
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1668 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1847
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1848 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 2027
LLGCRKITKRDTFI KDVFMNILMWWEDFDGKVPAP ILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 2028 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 2207
L+R S+WHSE+E G ITPGDT VRIE+GELLTGTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2208 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSL 2387
RKFLGHTQWLVNYWLLQN FSIGIGDTIADASTME IN TIS AK +VK LIR AQEK L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL 720
Query: 2388 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2567
E EPGRTMM+SFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2568 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2747
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2748 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2927
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2928 LDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQ 3107
LDSLKMKK EFD+V+R+EFDD+NW P YM + VEDLK IREFR+VF+AEV+KL DR Q
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 3108 LGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVP 3287
L TEI TTGD+S P+PVNL+RLIWNAQKTFKVD RRPSDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 3288 GDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAPG 3467
G+D +S EAQKNATL FNILLRSTFASKRVL+E+ L+REAF+WV+GE+ESRFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 3468 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140
Query: 3648 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDEEV 3827
+V KTKERAK+VQCALEYTTLRSVTQATEVWYDPDPM TIIEED DFVKSYYEMPDEEV
Sbjct: 1141 SDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEV 1200
Query: 3828 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 4007
A EKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 4008 NDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGFKP 4187
NDEAPKGE DESAEDDVFLKKIESNMLTEM LRGIPDINKVFIK+ KV +FDE++GFKP
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320
Query: 4188 EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4367
EWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 4368 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4547
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 4548 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMGTP 4727
LRGVTENIMLGQLAPIGTG+C+LYLND+ML+ AIELQLPSYM+GLDFGMTP+RSPI GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 1500
Query: 4728 YHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 4832
YHEG+MSP+YLLSPN R SP SDAQFSPYVGGMAF
Sbjct: 1501 YHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535
>ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
cacao] gi|590702281|ref|XP_007046585.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
gi|590702285|ref|XP_007046586.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698845|gb|EOX90741.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698846|gb|EOX90742.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698847|gb|EOX90743.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
Length = 1861
Score = 2806 bits (7275), Expect = 0.0
Identities = 1382/1536 (89%), Positives = 1461/1536 (95%), Gaps = 1/1536 (0%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GGLSD RLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMK VLSIMRCVCFNCSKILADEE+HK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEEHK 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 767
FKQ+ +IKNPK+RL+K+LDACKNK+KC+GGDEIDVQ +D E+PVKKSRGGCGAQQPKL+I
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKSKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKLSI 180
Query: 768 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 947
+GMKMIAEYK QRK+ DD EQLPEPVERKQ LTAERVLSVLKRISDEDC LLGLNPK+AR
Sbjct: 181 DGMKMIAEYKPQRKRNDDQEQLPEPVERKQTLTAERVLSVLKRISDEDCQLLGLNPKFAR 240
Query: 948 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 1127
PDWMILQVL SVMMDTS+RSEDDLTH LAMIIRHNENLR+QERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHALAMIIRHNENLRRQERNGSPAHIIS 300
Query: 1128 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1307
EFAQLLQFH+ATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1308 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1487
TVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1488 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1667
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI+IMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYST 480
Query: 1668 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1847
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1848 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 2027
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2028 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 2207
LLR SAWHSE ETGFITPGDTQVRIE+GELL+GTLCKKALGTS+GSLIHVIWEEVGPDAA
Sbjct: 601 LLRNSAWHSETETGFITPGDTQVRIEKGELLSGTLCKKALGTSSGSLIHVIWEEVGPDAA 660
Query: 2208 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSL 2387
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TMEKIN+TISKAK EVK+LI AQ K L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISKAKEEVKNLIVKAQNKDL 720
Query: 2388 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2567
EPEPGRTMMESFEN+VNQVLNKARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMESFENKVNQVLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2568 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2747
ACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2748 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2927
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 900
Query: 2928 LDSLKMKKPEFDKVYRFEFDDDNWTP-NYMQSDYVEDLKNIREFRHVFDAEVKKLADDRL 3104
LDSLKMKK EFD+V+R+ DD++W P +YM +++EDL+ I+E R VF+AEV+KL DR
Sbjct: 901 LDSLKMKKSEFDRVFRYNIDDESWNPTSYMLPEHIEDLRTIQELRDVFEAEVQKLDADRY 960
Query: 3105 QLGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVV 3284
QLGTEI TGD++WP+PVNL+RLIWNAQKTFKVD RR SD+HP+EIV+++DKLQERLKVV
Sbjct: 961 QLGTEIAVTGDSNWPLPVNLKRLIWNAQKTFKVDFRRVSDLHPVEIVDSVDKLQERLKVV 1020
Query: 3285 PGDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAP 3464
PG D +S+EAQKNATLFF+ILLRST ASKRVL+E+ LT+EAF+WVIGE+ESRFLQSLVAP
Sbjct: 1021 PGTDPLSVEAQKNATLFFSILLRSTLASKRVLQEYRLTKEAFEWVIGEIESRFLQSLVAP 1080
Query: 3465 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 3644
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1140
Query: 3645 KPEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDEE 3824
PE +KTKE+AKNVQCALEYTTLRSVT ATEVWYDPDP TIIEEDIDFVKSYYEMPDEE
Sbjct: 1141 SPEASKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPTSTIIEEDIDFVKSYYEMPDEE 1200
Query: 3825 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 4004
VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI
Sbjct: 1201 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1260
Query: 4005 MNDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGFK 4184
MNDE PKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK K ++FDE +G+K
Sbjct: 1261 MNDEGPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASKFDEADGYK 1320
Query: 4185 PEVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 4364
EW+LDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD
Sbjct: 1321 TGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380
Query: 4365 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 4544
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAE+D
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAESD 1440
Query: 4545 HLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMGT 4724
+LRGVTENIMLGQLAPIGTGDC+LYLND+ML+ AIELQLPSYMEGL+FGMTP+RSP+ GT
Sbjct: 1441 YLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGT 1500
Query: 4725 PYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 4832
PYHEGMMSP+YLLSPN R SPI+DAQFSPYVGGMAF
Sbjct: 1501 PYHEGMMSPSYLLSPNLRLSPITDAQFSPYVGGMAF 1536
>ref|XP_006659128.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Oryza
brachyantha]
Length = 1855
Score = 2804 bits (7268), Expect = 0.0
Identities = 1376/1536 (89%), Positives = 1465/1536 (95%), Gaps = 1/1536 (0%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MD RFP+SPAEVAKV++VQFGILSPDEIRQMSVVQIEH+ET ERGKPKPGGLSD RLGTI
Sbjct: 1 MDARFPYSPAEVAKVQLVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRK+KCETC A MAECPGHFGHLELAKPMFHIGF+K VLSIMRCVCFNCSKILADE+D K
Sbjct: 61 DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDE-DLEKPVKKSRGGCGAQQPKLT 764
FKQ+ +I+NPK+RL+++ DACK+K C GGD++DVQ++ D ++PVK+ RGGCGAQQP +T
Sbjct: 121 FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKR-RGGCGAQQPNIT 179
Query: 765 IEGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYA 944
++GMKM+AE+K +KK DD EQLPEPVERKQ L+AERVL+VLKRISDEDC+LLGLNPK+A
Sbjct: 180 VDGMKMVAEFKAPKKKNDDQEQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 239
Query: 945 RPDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHII 1124
RPDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENLR+QERNGAPAHII
Sbjct: 240 RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 299
Query: 1125 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 1304
+EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 300 TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 359
Query: 1305 RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYII 1484
RTVITPDP INIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYII
Sbjct: 360 RTVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 419
Query: 1485 REDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 1664
REDGQRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS
Sbjct: 420 REDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 479
Query: 1665 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 1844
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD
Sbjct: 480 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 539
Query: 1845 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQI 2024
TLLGCRKITKRDT IEKDVFMNILMWWEDFDGKVPAP ILKPRP+WTGKQVFNLIIPK I
Sbjct: 540 TLLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKPI 599
Query: 2025 NLLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDA 2204
NL+R SAWHSE ETGFITPGDT VRIE+GELL+GTLCKK LGTSTGSLIHVIWEEVGPDA
Sbjct: 600 NLIRFSAWHSEAETGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 659
Query: 2205 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKS 2384
ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADA+TMEKIN+TIS AKNEVK+LI+ A +K
Sbjct: 660 ARKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISTAKNEVKELIKQAHDKH 719
Query: 2385 LEPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 2564
LE EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM
Sbjct: 720 LEAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 779
Query: 2565 TACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 2744
TACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 780 TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 839
Query: 2745 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 2924
EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 840 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 899
Query: 2925 KLDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRL 3104
KLDSLKMKK EFD V+R+E DD+NW PNYM ++VEDLK IREFR+VF+AEV+KL DR
Sbjct: 900 KLDSLKMKKGEFDTVFRYELDDENWRPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRF 959
Query: 3105 QLGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVV 3284
QLGTEI TTGDN+WPMPVNL+RLIWNAQKTFK+D RRPSDMHPMEIVEAIDKLQERLKVV
Sbjct: 960 QLGTEIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 1019
Query: 3285 PGDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAP 3464
PGDD+MS+EAQKNATLFFNILLRSTFASKRVLKE+ LT+EAF+WVIGE+ESRFLQSLVAP
Sbjct: 1020 PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAP 1079
Query: 3465 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 3644
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL
Sbjct: 1080 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYL 1139
Query: 3645 KPEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDEE 3824
KPEVNK KE AKNVQCALEYTTLRSVT ATE+WYDPDP+GTIIEED++FV+SYYEMPDE+
Sbjct: 1140 KPEVNKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDED 1199
Query: 3825 VAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 4004
V P+KISPWLLRIELNREMMVDKKLSMADIAEKIN EFDDDL+CIFNDDNA+KLILR+RI
Sbjct: 1200 VDPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRI 1259
Query: 4005 MNDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGFK 4184
NDEAPKGE DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVN+F++++GFK
Sbjct: 1260 TNDEAPKGEIQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFEDNDGFK 1319
Query: 4185 PEVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 4364
P+ EWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1320 PDNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFD 1379
Query: 4365 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 4544
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+D
Sbjct: 1380 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESD 1439
Query: 4545 HLRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMGT 4724
+LRGVTENIMLGQLAPIGTG C+LYLNDQMLQQAIELQLPSY+EGLDFGMTP+RSPI GT
Sbjct: 1440 YLRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGT 1499
Query: 4725 PYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 4832
PYHEGMMSP+YLLSPN R+SPI+DAQFSPYVGGMAF
Sbjct: 1500 PYHEGMMSPSYLLSPNIRASPITDAQFSPYVGGMAF 1535
>ref|XP_007157862.1| hypothetical protein PHAVU_002G104500g [Phaseolus vulgaris]
gi|561031277|gb|ESW29856.1| hypothetical protein
PHAVU_002G104500g [Phaseolus vulgaris]
Length = 1834
Score = 2803 bits (7265), Expect = 0.0
Identities = 1381/1535 (89%), Positives = 1453/1535 (94%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MD+RFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GLSD RLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGF+K VL+IMRCVCFNCSKILADE DHK
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 767
FKQ+ RI+NPK+RL+K+LDACKNK+KC+GGDEID+ +D ++PVKKSRGGCGAQQPK+TI
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180
Query: 768 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 947
EGMK+IAEYK QRKK+DD EQLPEPVERKQ L+AERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 181 EGMKIIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 948 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 1127
PDWMILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENL++QERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 1128 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1307
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1308 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1487
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1488 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1667
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1668 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1847
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1848 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 2027
LLGCRKITKRDTFI KDVFMN LMWWEDFDGKVP PTILKP PLWTGKQVFNLIIPK IN
Sbjct: 541 LLGCRKITKRDTFISKDVFMNTLMWWEDFDGKVPTPTILKPEPLWTGKQVFNLIIPKPIN 600
Query: 2028 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 2207
L+R S+WHSE+E G ITPGDT VRIE+GELLTGTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2208 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSL 2387
RKFLGHTQWLVNYWLLQN FSIGIGDTIADASTME IN TIS AK +VK LIR AQEK L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIRDAQEKKL 720
Query: 2388 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2567
E EPGRTMM+SFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2568 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2747
ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2748 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2927
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2928 LDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQ 3107
LDSLKMKK EFD+V+R+EFDD+NW P YM + VEDLK IREFR+VF+AEV+KL DR Q
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 3108 LGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVP 3287
L TEI TTGD+S P+PVNL+RLIWNAQKTFKVD RRPSDMHPMEIVEAIDKLQERL+VVP
Sbjct: 961 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLRVVP 1020
Query: 3288 GDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAPG 3467
G+D +S EAQKNATL FNILLRSTFASKRVL+E+ L+REAF+WV+GE+ESRFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 3468 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLN 1140
Query: 3648 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDEEV 3827
P+V KTKERAK+VQCALEYTTLRSVTQATEVWYDP+PM TII+ED+DFVKSYYEMPDEEV
Sbjct: 1141 PDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPEPMSTIIDEDVDFVKSYYEMPDEEV 1200
Query: 3828 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 4007
A EKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 4008 NDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGFKP 4187
NDEAPKGE DESAEDDVFLKKIESNMLTEM LRGIPDINKVFIK+ KV +FDE EGFKP
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDESEGFKP 1320
Query: 4188 EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4367
EWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 4368 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4547
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 4548 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMGTP 4727
LRGVTENIMLGQLAPIGTG+C+LYLND+ML+ AIELQLPSYM+GLDFGMTP+RSPI GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 1500
Query: 4728 YHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 4832
YHEG+MSP+YLLSPN R SP SDAQFSPYVGGMAF
Sbjct: 1501 YHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535
>ref|XP_004232527.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Solanum
lycopersicum]
Length = 1846
Score = 2801 bits (7261), Expect = 0.0
Identities = 1377/1536 (89%), Positives = 1461/1536 (95%), Gaps = 1/1536 (0%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MD+RFPFSPAEVAKVR VQFGI+SPDEIRQMSVV IEH ETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMK VLSI+RCVCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 767
FKQ+ RI+NPK+RLRK+LDACKNKTKC+GGDEIDVQ +D E+PVKKSRGGCGAQQPK++I
Sbjct: 121 FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGQDTEEPVKKSRGGCGAQQPKISI 180
Query: 768 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 947
+GMKM+AEYK+Q+KK+DDPEQ+PEPVERKQQL+AERVLS+LKR+SDEDC+LLGLNP++AR
Sbjct: 181 DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR 240
Query: 948 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 1127
PDWMILQ L SVMMDTS+RSEDDLTHQLAMIIRHNENL++QERNGAPAHIIS
Sbjct: 241 PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300
Query: 1128 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1307
EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR 360
Query: 1308 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1487
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1488 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1667
+DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1668 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1847
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
Query: 1848 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 2027
LLGCRK+TKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2028 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 2207
LLR SAWH+++E G+ITPGDTQVRIE+GELL+GTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2208 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSL 2387
RKFLGHTQWLVNYWLLQ FSIGIGDTIADASTMEKIN+TIS AK +VK+LI+ AQEK L
Sbjct: 661 RKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLL 720
Query: 2388 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2567
E EPGRTMMESFENRVNQVLNKARDDAGSSA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2568 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2747
ACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2748 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2927
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQK 900
Query: 2928 LDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQ 3107
LDSLK KK FD +Y +E DD NW P+YM + VEDLK IRE R VFDAEV+KL DR Q
Sbjct: 901 LDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQ 960
Query: 3108 LGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVP 3287
LGTEI TGDNSWP+PVN++RL+ NAQKTFK+D RRPSDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 3288 GDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAPG 3467
GDD +SMEAQKNATLFFNILLRS ASKRVLKE+ L+REAF+WV+GE+ESRFLQSLVAPG
Sbjct: 1021 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPG 1080
Query: 3468 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 3648 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDEEV 3827
PEV KTKERAK VQCALEYTTLRSVTQATEVWYDPDPM T+IEED++FVKSYYEMPDEE+
Sbjct: 1141 PEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1200
Query: 3828 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 4007
P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 4008 NDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGFKP 4187
NDEAPKGE LDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ KV +FD++EGFK
Sbjct: 1261 NDEAPKGE-LDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGFKA 1319
Query: 4188 EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4367
E EWMLDTEGVNLLAVM HEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1320 ENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1379
Query: 4368 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4547
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+DH
Sbjct: 1380 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDH 1439
Query: 4548 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYME-GLDFGMTPSRSPIMGT 4724
LRGVTENIMLGQLAPIGTG CSLYLN++ML+QAIE+ LPSYME GL+FGMTP RSPI GT
Sbjct: 1440 LRGVTENIMLGQLAPIGTGGCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGT 1499
Query: 4725 PYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 4832
PYH+GMMSPNYLLSPN R SPI+DAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535
>ref|XP_004512182.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer
arietinum]
Length = 1834
Score = 2800 bits (7259), Expect = 0.0
Identities = 1384/1535 (90%), Positives = 1453/1535 (94%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MD+RFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GGLSD RLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKIGGLSDPRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRKMKCETCTA+MAECPGHFG+LELAKPMFHIGF+K VLSIMRCVCFNCSKILADE+DHK
Sbjct: 61 DRKMKCETCTASMAECPGHFGYLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEQDHK 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 767
FKQ+ RIK+PK+RLRK+LDACKNKTKC+GGD+ID+ D E+PVKKSRGGCGAQQPK+TI
Sbjct: 121 FKQALRIKSPKNRLRKILDACKNKTKCEGGDDIDMPGHDTEEPVKKSRGGCGAQQPKITI 180
Query: 768 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 947
EGMKMIAEYK QRKK+DD EQLPEPVERKQ L+AERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 948 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 1127
PDW+ILQVL SVMMDTS+RSEDDLTHQLAMIIRHNENL++QERNG+PAHIIS
Sbjct: 241 PDWLILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 1128 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1307
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1308 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1487
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1488 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1667
+DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1668 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1847
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD+
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDS 540
Query: 1848 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 2027
LLGCRKITKRDTFI KDVFMNILMWWEDFDGKVP PTILKP P+WTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPTPTILKPEPMWTGKQVFNLIIPKQIN 600
Query: 2028 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 2207
L+R S+WH+ENE G ITPGDT VRIE+GELLTGTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHNENEKGPITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2208 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSL 2387
RKFLGHTQWLVNYWLLQN FSIGIGDTIADASTME IN TIS+AK +VK LIR AQEK L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISQAKEKVKQLIREAQEKKL 720
Query: 2388 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2567
E EPGRTMMESFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2568 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2747
ACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2748 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2927
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2928 LDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQ 3107
LDSLKMKK +FD+ +R+EFDD+NW P YM + VEDLK IREFR+VF+AEV+KL DR Q
Sbjct: 901 LDSLKMKKADFDRAFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLDADRFQ 960
Query: 3108 LGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVP 3287
L TEI TTGD+S P+PVNL+RLIWNAQKTFKVD RRPSDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 3288 GDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAPG 3467
GDD +S EAQKNATL FNILLRSTFASKRVL+E+ L+REAF+WV+GE+ESRFLQSLVA G
Sbjct: 1021 GDDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 3468 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 3648 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDEEV 3827
PEV KTKERAK+VQCALEYTTLRSVTQATEVWYDPDPM TIIEED+DFVKSYYEMPDEEV
Sbjct: 1141 PEVCKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 3828 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 4007
A EKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 4008 NDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGFKP 4187
NDEAPKGE DESAEDDVFLKKIESNMLTEM LRGI DINKVFIK+ K+ +FDE+EGFKP
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIADINKVFIKNTKIQKFDENEGFKP 1320
Query: 4188 EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4367
EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 YEEWMLDTEGVNLLAVMCHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 4368 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4547
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 4548 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYMEGLDFGMTPSRSPIMGTP 4727
LRGVTENIMLGQLAPIGTG+C+L LND+ML+ AIELQLPSYMEGLDFGMTP RSPI TP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALLLNDEMLKNAIELQLPSYMEGLDFGMTPGRSPISATP 1500
Query: 4728 YHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 4832
YHEG+MSP+YLLSPN R SP +DAQFSPYVGGMAF
Sbjct: 1501 YHEGLMSPSYLLSPNLRLSPTNDAQFSPYVGGMAF 1535
>ref|XP_006340787.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Solanum
tuberosum]
Length = 1839
Score = 2800 bits (7257), Expect = 0.0
Identities = 1376/1536 (89%), Positives = 1460/1536 (95%), Gaps = 1/1536 (0%)
Frame = +3
Query: 228 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDTRLGTI 407
MD+RFPFSPAEVAKVR VQFGI+SPDEIRQMSVV IEH ETTERGKPKPGGLSD RLGTI
Sbjct: 1 MDLRFPFSPAEVAKVRTVQFGIVSPDEIRQMSVVHIEHGETTERGKPKPGGLSDPRLGTI 60
Query: 408 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHK 587
DRKMKCETC ANMAECPGHFGHLELAKPMFHIGFMK VLSI+RCVCFNCSKILADE+D K
Sbjct: 61 DRKMKCETCMANMAECPGHFGHLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEDDPK 120
Query: 588 FKQSQRIKNPKHRLRKVLDACKNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTI 767
FKQ+ RI+NPK+RLRK+LDACKNKTKC+GGDEIDVQ D E+PVKKSRGGCGAQQPK++I
Sbjct: 121 FKQAMRIRNPKNRLRKMLDACKNKTKCEGGDEIDVQGHDTEEPVKKSRGGCGAQQPKISI 180
Query: 768 EGMKMIAEYKIQRKKTDDPEQLPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYAR 947
+GMKM+AEYK+Q+KK+DDPEQ+PEPVERKQQL+AERVLS+LKR+SDEDC+LLGLNP++AR
Sbjct: 181 DGMKMVAEYKMQKKKSDDPEQMPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEFAR 240
Query: 948 PDWMILQVLXXXXXXXXXSVMMDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIIS 1127
PDWMILQ L SVMMDTS+RSEDDLTHQLAMIIRHNENL++QERNGAPAHIIS
Sbjct: 241 PDWMILQALPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 300
Query: 1128 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1307
EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSAR 360
Query: 1308 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIR 1487
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1488 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 1667
+DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1668 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 1847
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 540
Query: 1848 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQIN 2027
LLGCRK+TKRDTFIEKDVFMNILMWWEDFDGKVPAP ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQIN 600
Query: 2028 LLRTSAWHSENETGFITPGDTQVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAA 2207
LLR SAWH+++E G+ITPGDTQVRIE+GELL+GTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LLRYSAWHNDSEKGYITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2208 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSL 2387
RKFLGHTQWLVNYWLLQ FSIGIGDTIADASTMEKIN+TIS AK +VK+LI+ AQEK L
Sbjct: 661 RKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMEKINETISNAKAKVKELIKAAQEKLL 720
Query: 2388 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2567
E EPGRTMMESFENRVNQVLNKARDDAGSSA+KSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2568 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2747
ACVGQQNVEGKRIP+GFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2748 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 2927
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQK 900
Query: 2928 LDSLKMKKPEFDKVYRFEFDDDNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQ 3107
LDSLK KK FD +Y +E DD NW P+YM + VEDLK IRE R VFDAEV+KL DR Q
Sbjct: 901 LDSLKAKKGTFDDMYAYEIDDPNWNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQ 960
Query: 3108 LGTEITTTGDNSWPMPVNLRRLIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVP 3287
LGTEI TGDNSWP+PVN++RL+ NAQKTFK+D RRPSDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LGTEIAVTGDNSWPLPVNIQRLVLNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 3288 GDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAPG 3467
GDD +SMEAQKNATLFFNILLRS ASKRVLKE+ L+REAF+WV+GE+ESRFLQSLVAPG
Sbjct: 1021 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPG 1080
Query: 3468 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3647
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 3648 PEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMGTIIEEDIDFVKSYYEMPDEEV 3827
PEV KTKERAK VQCALEYTTLRSVTQATEVWYDPDPM T+IEED++FVKSYYEMPDEE+
Sbjct: 1141 PEVGKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDVEFVKSYYEMPDEEI 1200
Query: 3828 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 4007
P+KISPWLLRIELNREMMVDKKLSMADIAEKIN+EFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINVEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 4008 NDEAPKGESLDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEDEGFKP 4187
NDEAPKGE LDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ KV +FD++EGFK
Sbjct: 1261 NDEAPKGE-LDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKVQKFDDNEGFKA 1319
Query: 4188 EVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4367
E EWMLDTEGVNLLAVM HEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1320 ENEWMLDTEGVNLLAVMTHEDVDASRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1379
Query: 4368 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4547
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+DH
Sbjct: 1380 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDH 1439
Query: 4548 LRGVTENIMLGQLAPIGTGDCSLYLNDQMLQQAIELQLPSYME-GLDFGMTPSRSPIMGT 4724
LRGVTENIMLGQLAPIGTG CSLYLN++ML+QAIE+ LPSYME GL+FGMTP RSPI GT
Sbjct: 1440 LRGVTENIMLGQLAPIGTGSCSLYLNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGT 1499
Query: 4725 PYHEGMMSPNYLLSPNARSSPISDAQFSPYVGGMAF 4832
PYH+GMMSPNYLLSPN R SPI+DAQFSPYVGGMAF
Sbjct: 1500 PYHDGMMSPNYLLSPNMRMSPITDAQFSPYVGGMAF 1535