BLASTX nr result

ID: Papaver23_contig00034216 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00034216
         (574 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282256.1| PREDICTED: uncharacterized protein LOC100266...   185   5e-45
ref|XP_004134396.1| PREDICTED: DNA mismatch repair protein MSH1,...   182   3e-44
gb|ACA35268.1| DNA mismatch repair protein [Cucumis sativus]          182   3e-44
ref|XP_002314510.1| predicted protein [Populus trichocarpa] gi|2...   174   9e-42
ref|XP_004170676.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch...   172   3e-41

>ref|XP_002282256.1| PREDICTED: uncharacterized protein LOC100266612 [Vitis vinifera]
          Length = 1144

 Score =  185 bits (469), Expect = 5e-45
 Identities = 106/196 (54%), Positives = 128/196 (65%), Gaps = 5/196 (2%)
 Frame = +1

Query: 1    IQRAGELYLSLNGKDLSVQRNSMKVQH----QNFNSDKEWINE-AEDRSSTLKPLNCKSE 165
            I+RA ELYLS++ KDL   RN  ++ H       N+  E  N+ +     T+ P   K E
Sbjct: 938  IRRAEELYLSIHSKDLLSGRNETELGHFCLDTTVNTSGEVYNQLSRITGGTICP---KIE 994

Query: 166  TLNPTETLQKEVATAVAIICQQKLIELCRDRNLSEPAELMCTTIATREQPPPSVIGSSCV 345
            + N  E L K+V +AV I+CQ+KL EL + +N S+  E+ C  I   EQPPPS IG+S V
Sbjct: 995  STNEMEVLHKKVESAVTIVCQKKLKELYKQKNTSKLPEINCVAILPGEQPPPSTIGASSV 1054

Query: 346  YVLFRPDGKLYVGETDDLGGRVRAHRSKGGMQNVSFIYIEVPGKSFATLLETNLIHQLPN 525
            YVLF  D KLYVGETDDL GRVRAHRSK GMQ  SF+Y  VPGKS A  LET LI+QLP 
Sbjct: 1055 YVLFSTDKKLYVGETDDLEGRVRAHRSKEGMQKASFLYFVVPGKSLACQLETLLINQLPV 1114

Query: 526  YGFRLSNVADGKHRNF 573
             GF+L N ADGKHRNF
Sbjct: 1115 QGFQLVNRADGKHRNF 1130


>ref|XP_004134396.1| PREDICTED: DNA mismatch repair protein MSH1, mitochondrial-like
            [Cucumis sativus]
          Length = 1122

 Score =  182 bits (463), Expect = 3e-44
 Identities = 96/197 (48%), Positives = 131/197 (66%), Gaps = 6/197 (3%)
 Frame = +1

Query: 1    IQRAGELYLS------LNGKDLSVQRNSMKVQHQNFNSDKEWINEAEDRSSTLKPLNCKS 162
            IQRA +LYLS      ++GK+ +   N     H + N +    +  +     +K    K+
Sbjct: 913  IQRAEDLYLSNYAKEGISGKE-TTDLNFFVSSHPSLNGNGTGKSNLKSNGVIVKADQPKT 971

Query: 163  ETLNPTETLQKEVATAVAIICQQKLIELCRDRNLSEPAELMCTTIATREQPPPSVIGSSC 342
            ET + T  L K++  A+  ICQ+KLIE  RD+N   PAE+ C  I  RE+PPPS IG+S 
Sbjct: 972  ETTSKTGVLWKKLERAITKICQKKLIEFHRDKNTLTPAEIQCVLIDAREKPPPSTIGASS 1031

Query: 343  VYVLFRPDGKLYVGETDDLGGRVRAHRSKGGMQNVSFIYIEVPGKSFATLLETNLIHQLP 522
            VYV+ RPDGK YVG+TDDL GRV++HR K GM++ +F+Y+ VPGKS A  LET LI++LP
Sbjct: 1032 VYVILRPDGKFYVGQTDDLDGRVQSHRLKEGMRDAAFLYLMVPGKSLACQLETLLINRLP 1091

Query: 523  NYGFRLSNVADGKHRNF 573
            ++GF+L+NVADGKHRNF
Sbjct: 1092 DHGFQLTNVADGKHRNF 1108


>gb|ACA35268.1| DNA mismatch repair protein [Cucumis sativus]
          Length = 1227

 Score =  182 bits (463), Expect = 3e-44
 Identities = 96/197 (48%), Positives = 131/197 (66%), Gaps = 6/197 (3%)
 Frame = +1

Query: 1    IQRAGELYLS------LNGKDLSVQRNSMKVQHQNFNSDKEWINEAEDRSSTLKPLNCKS 162
            IQRA +LYLS      ++GK+ +   N     H + N +    +  +     +K    K+
Sbjct: 1018 IQRAEDLYLSNYAKEGISGKE-TTDLNFFVSSHPSLNGNGTGKSNLKSNGVIVKADQPKT 1076

Query: 163  ETLNPTETLQKEVATAVAIICQQKLIELCRDRNLSEPAELMCTTIATREQPPPSVIGSSC 342
            ET + T  L K++  A+  ICQ+KLIE  RD+N   PAE+ C  I  RE+PPPS IG+S 
Sbjct: 1077 ETTSKTGVLWKKLERAITKICQKKLIEFHRDKNTLTPAEIQCVLIDAREKPPPSTIGASS 1136

Query: 343  VYVLFRPDGKLYVGETDDLGGRVRAHRSKGGMQNVSFIYIEVPGKSFATLLETNLIHQLP 522
            VYV+ RPDGK YVG+TDDL GRV++HR K GM++ +F+Y+ VPGKS A  LET LI++LP
Sbjct: 1137 VYVILRPDGKFYVGQTDDLDGRVQSHRLKEGMRDAAFLYLMVPGKSLACQLETLLINRLP 1196

Query: 523  NYGFRLSNVADGKHRNF 573
            ++GF+L+NVADGKHRNF
Sbjct: 1197 DHGFQLTNVADGKHRNF 1213


>ref|XP_002314510.1| predicted protein [Populus trichocarpa] gi|222863550|gb|EEF00681.1|
            predicted protein [Populus trichocarpa]
          Length = 1130

 Score =  174 bits (441), Expect = 9e-42
 Identities = 92/191 (48%), Positives = 122/191 (63%)
 Frame = +1

Query: 1    IQRAGELYLSLNGKDLSVQRNSMKVQHQNFNSDKEWINEAEDRSSTLKPLNCKSETLNPT 180
            IQRA +LY S   K  S  R           +D +  + +   +++L P    ++ ++  
Sbjct: 938  IQRAEDLYFSAYAKGFSSDR---------IVNDSDEAHLSSGTTASLHPSTHSTKAVDTV 988

Query: 181  ETLQKEVATAVAIICQQKLIELCRDRNLSEPAELMCTTIATREQPPPSVIGSSCVYVLFR 360
            E  +K++  A+ +ICQ+KLIEL + +N SE     C  I  REQPPPS I +SCVYV+ R
Sbjct: 989  E--KKDIENAITMICQKKLIELYKQKNTSEVVSFHCVAIGAREQPPPSTISASCVYVMLR 1046

Query: 361  PDGKLYVGETDDLGGRVRAHRSKGGMQNVSFIYIEVPGKSFATLLETNLIHQLPNYGFRL 540
            PD KLYVG TDDL  R+R+HRSK GM N +F+Y  VPGKS A LLET LI+QLP  GF+L
Sbjct: 1047 PDKKLYVGVTDDLESRIRSHRSKEGMDNAAFLYFIVPGKSIACLLETLLINQLPIKGFKL 1106

Query: 541  SNVADGKHRNF 573
            +NV+DGKHRNF
Sbjct: 1107 TNVSDGKHRNF 1117


>ref|XP_004170676.1| PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein MSH1,
           mitochondrial-like, partial [Cucumis sativus]
          Length = 675

 Score =  172 bits (437), Expect = 3e-41
 Identities = 82/139 (58%), Positives = 107/139 (76%)
 Frame = +1

Query: 157 KSETLNPTETLQKEVATAVAIICQQKLIELCRDRNLSEPAELMCTTIATREQPPPSVIGS 336
           K+ET + T  L K++  A+  ICQ+KLIE  RD+N   PAE+ C  I  RE+PPPS IG+
Sbjct: 523 KTETTSKTGVLWKKLERAITKICQKKLIEFHRDKNTLTPAEIQCVLIDAREKPPPSTIGA 582

Query: 337 SCVYVLFRPDGKLYVGETDDLGGRVRAHRSKGGMQNVSFIYIEVPGKSFATLLETNLIHQ 516
           S VYV+ RPDGK YVG+TDDL GRV++HR K GM++ +F+Y+ VPGKS A  LET LI++
Sbjct: 583 SSVYVILRPDGKFYVGQTDDLDGRVQSHRLKEGMRDAAFLYLMVPGKSLACQLETLLINR 642

Query: 517 LPNYGFRLSNVADGKHRNF 573
           LP++GF+L+NVADGKHRNF
Sbjct: 643 LPDHGFQLTNVADGKHRNF 661


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