BLASTX nr result

ID: Papaver23_contig00033441 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00033441
         (402 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002337469.1| hypothetical protein POPTRDRAFT_793872 [Popu...    96   2e-18
ref|XP_004170971.1| PREDICTED: SWI/SNF-related matrix-associated...    96   3e-18
ref|XP_004150074.1| PREDICTED: SWI/SNF-related matrix-associated...    96   4e-18
ref|XP_002884170.1| defective in RNA-directed DNA methylation 1 ...    93   3e-17
ref|XP_003541607.1| PREDICTED: DNA repair and recombination prot...    92   3e-17

>ref|XP_002337469.1| hypothetical protein POPTRDRAFT_793872 [Populus trichocarpa]
           gi|222839420|gb|EEE77757.1| hypothetical protein
           POPTRDRAFT_793872 [Populus trichocarpa]
          Length = 137

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 55/124 (44%), Positives = 71/124 (57%)
 Frame = -2

Query: 374 SDQRNRKVEKEGDRGICGETPIEKSKGVYVGVQDDLMSNSQRSGHSGEDDGLGEIWKEMS 195
           SD   R++  E    + GE  I K KGVYVGV++D +          EDDGLG+IWKEMS
Sbjct: 2   SDHAERRIHGEVV-SLTGEPDITKDKGVYVGVEEDEVDTGI------EDDGLGDIWKEMS 54

Query: 194 LAIECSKDSSLPLSTXXXXXXXXXXXXXXXEHSFILKDDLGYFCRICGVVEKRIEQIIDF 15
            A+E SKD    +                 +HSF+LKDD+GY CRICGV+EK I+ II+ 
Sbjct: 55  FALESSKD----VVENPQPDENMEEDEDYCDHSFVLKDDIGYVCRICGVIEKAIDTIIEI 110

Query: 14  QWGK 3
           Q+ K
Sbjct: 111 QFNK 114


>ref|XP_004170971.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A containing DEAD/H box
           1B-like [Cucumis sativus]
          Length = 903

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 52/123 (42%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
 Frame = -2

Query: 365 RNRKVEKEGDRGICGET-PIEKSKGVYVGVQDDLMSNSQRSGHSG-EDDGLGEIWKEMSL 192
           R+R+     +    GE+  I K KGVY+GV++D     + SG +  EDDGLG+IW +M +
Sbjct: 205 RDRRASNGEEATPIGESGTINKDKGVYIGVEED---EDEVSGQANSEDDGLGDIWNDMQM 261

Query: 191 AIECSKDSSLPLSTXXXXXXXXXXXXXXXEHSFILKDDLGYFCRICGVVEKRIEQIIDFQ 12
           A+ECSKD    + +                HSF+LKDDLGY CRICGV+++ IE I +FQ
Sbjct: 262 ALECSKDLDAAVDSSSNQPTTEDVDCE---HSFLLKDDLGYVCRICGVIDRGIETIFEFQ 318

Query: 11  WGK 3
           + K
Sbjct: 319 YNK 321


>ref|XP_004150074.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A containing DEAD/H box
           1B-like [Cucumis sativus]
          Length = 903

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 55/134 (41%), Positives = 77/134 (57%), Gaps = 5/134 (3%)
 Frame = -2

Query: 389 KDVLGSDQR---NRKVEKEGDRGICGET-PIEKSKGVYVGVQDDLMSNSQRSGHSG-EDD 225
           KD+   D R   +R+     +    GE+  I K KGVY+GV++D     + SG +  EDD
Sbjct: 194 KDIAIVDHRTSQDRRASNGEEATPIGESGTINKDKGVYIGVEED---EDEVSGQANSEDD 250

Query: 224 GLGEIWKEMSLAIECSKDSSLPLSTXXXXXXXXXXXXXXXEHSFILKDDLGYFCRICGVV 45
           GLG+IW +M +A+ECSKD    + +                HSF+LKDDLGY CRICGV+
Sbjct: 251 GLGDIWNDMQMALECSKDLDAAVDSSSNQPTTEDVDCE---HSFLLKDDLGYVCRICGVI 307

Query: 44  EKRIEQIIDFQWGK 3
           ++ IE I +FQ+ K
Sbjct: 308 DRGIETIFEFQYNK 321


>ref|XP_002884170.1| defective in RNA-directed DNA methylation 1 [Arabidopsis lyrata
           subsp. lyrata] gi|297330010|gb|EFH60429.1| defective in
           RNA-directed DNA methylation 1 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 815

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 51/112 (45%), Positives = 66/112 (58%)
 Frame = -2

Query: 338 DRGICGETPIEKSKGVYVGVQDDLMSNSQRSGHSGEDDGLGEIWKEMSLAIECSKDSSLP 159
           D+ I  E  +   KGVYVGV+DD + N   +     D+ LG IW EM+++IECSKD +  
Sbjct: 264 DKVIAIENGVANEKGVYVGVEDDDIDNESEAA----DEDLGNIWNEMAMSIECSKDIAWE 319

Query: 158 LSTXXXXXXXXXXXXXXXEHSFILKDDLGYFCRICGVVEKRIEQIIDFQWGK 3
            S                EHSFILKDD+GY CR+CGV+EK I +IID Q+ K
Sbjct: 320 TS-----HKQKADVVEDCEHSFILKDDMGYVCRVCGVIEKSILEIIDVQFTK 366


>ref|XP_003541607.1| PREDICTED: DNA repair and recombination protein RDH54-like [Glycine
           max]
          Length = 1001

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 49/111 (44%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
 Frame = -2

Query: 338 DRGICGETPIEKSKGVYVGVQDDLMSNSQRSGHSGEDDGLGEIWKEMSLAIECSKDSSL- 162
           +  I G+      KGVY+GVQ+         G + +DDGL +IWKEMS+AIECSKD+ + 
Sbjct: 307 ETSISGKDNTRGDKGVYIGVQEV----EDHQGDTADDDGLEDIWKEMSMAIECSKDTYVN 362

Query: 161 PLSTXXXXXXXXXXXXXXXEHSFILKDDLGYFCRICGVVEKRIEQIIDFQW 9
           PL                  HSFILKDDLGY CR+CG++++ IE I +FQ+
Sbjct: 363 PLPDEEVKEDEDCD------HSFILKDDLGYVCRVCGIIDRGIETIFEFQY 407


Top