BLASTX nr result

ID: Papaver23_contig00033066 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00033066
         (601 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABG37670.1| integrase [Populus trichocarpa]                         82   9e-14
gb|ABG37658.1| integrase [Populus trichocarpa]                         77   3e-12
gb|ABG37656.1| integrase [Populus trichocarpa]                         75   7e-12
gb|ABG37671.1| integrase [Populus trichocarpa]                         74   3e-11
emb|CAN81103.1| hypothetical protein VITISV_003734 [Vitis vinifera]    70   2e-10

>gb|ABG37670.1| integrase [Populus trichocarpa]
          Length = 649

 Score = 81.6 bits (200), Expect = 9e-14
 Identities = 45/103 (43%), Positives = 65/103 (63%), Gaps = 6/103 (5%)
 Frame = -1

Query: 337 RKSQLNELHEIRNEGDMNC---KCKMKTFRDKHVITEIL---EPVLCYDSQLHQFSGRLK 176
           RK Q+NEL EIRN+   N    K ++K F DK ++ +     + VL Y+S+LH F G+L+
Sbjct: 390 RKLQINELEEIRNDAYDNSRIHKARIKEFHDKKILRKTFNVGQKVLLYNSRLHFFPGKLR 449

Query: 175 T*WKDPFVVKNEFHDGTVDIENPNNCNIFKVKVNPEVDTTTLE 47
           + W  PF+VK+ +  G  DIENP N N+FK+K++     TTLE
Sbjct: 450 SRWSGPFIVKHVYPYGACDIENPKNGNVFKLKMD-----TTLE 487


>gb|ABG37658.1| integrase [Populus trichocarpa]
          Length = 1139

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 40/90 (44%), Positives = 57/90 (63%), Gaps = 6/90 (6%)
 Frame = -1

Query: 337  RKSQLNELHEIRNEGDMNCK---CKMKTFRDKHVIT---EILEPVLCYDSQLHQFSGRLK 176
            RK Q+NEL EIRN+   N K    ++K F DK ++    ++ + VL Y+S+LH F G+L+
Sbjct: 931  RKLQINELEEIRNDAYENSKIHKARIKEFHDKKILRKTFDVGQKVLLYNSRLHLFPGKLR 990

Query: 175  T*WKDPFVVKNEFHDGTVDIENPNNCNIFK 86
            + W  PF+VK+    G  DIENP N N+FK
Sbjct: 991  SRWSGPFIVKHVCPYGACDIENPKNDNVFK 1020


>gb|ABG37656.1| integrase [Populus trichocarpa]
          Length = 694

 Score = 75.5 bits (184), Expect = 7e-12
 Identities = 39/90 (43%), Positives = 57/90 (63%), Gaps = 6/90 (6%)
 Frame = -1

Query: 337 RKSQLNELHEIRNEGDMNC---KCKMKTFRDKHVITEIL---EPVLCYDSQLHQFSGRLK 176
           RK Q+NEL EIRN+   N    K ++K F DK ++ +     + VL Y+S+LH F G+L+
Sbjct: 429 RKLQINELKEIRNDAYKNSRIHKGRIKEFHDKKILRKTFNVGQKVLLYNSRLHLFPGKLR 488

Query: 175 T*WKDPFVVKNEFHDGTVDIENPNNCNIFK 86
           + W  PF+VK+ +  G  DI+NP N N+FK
Sbjct: 489 SRWSGPFIVKHVYPYGACDIKNPKNDNVFK 518


>gb|ABG37671.1| integrase [Populus trichocarpa]
          Length = 1332

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 6/89 (6%)
 Frame = -1

Query: 334  KSQLNELHEIRNEGDMNCK---CKMKTFRDKHVIT---EILEPVLCYDSQLHQFSGRLKT 173
            K Q+NE  EIRN+   N K    ++K F DK +     ++ + VL Y+S+LH F G+L++
Sbjct: 1079 KLQINEPEEIRNDAYENSKIHKARIKDFHDKRIFRKTFDVGQKVLLYNSRLHLFLGKLRS 1138

Query: 172  *WKDPFVVKNEFHDGTVDIENPNNCNIFK 86
             W  PF+VK+ +  G  DIENP N NIFK
Sbjct: 1139 RWSGPFIVKHVYPYGACDIENPKNGNIFK 1167



 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 30/86 (34%), Positives = 45/86 (52%)
 Frame = -1

Query: 595 DKWQSRFESLQISETEPLSPSVEFQKTEFNPLPNELNYDVLGQNENVLISLPSELNEEHE 416
           + W+ + E L     E +  SV+  K +   LP  L Y  LG+NE   + + S+LN   E
Sbjct: 363 NSWRLKIEELSPRSIESIPSSVQPPKPDLKSLPFNLKYSFLGENETFPVIISSKLNAHEE 422

Query: 415 IMHSHVLRKHISAAGWSIANIEGIDP 338
                 L+ H +A GW+IA+I+GI P
Sbjct: 423 GKLLQTLKMHKNALGWTIADIKGISP 448


>emb|CAN81103.1| hypothetical protein VITISV_003734 [Vitis vinifera]
          Length = 1654

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 40/87 (45%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
 Frame = -1

Query: 325  LNELHEIRNEGDMNCKC---KMKTFRDKHVITEILEP---VLCYDSQLHQFSGRLKT*WK 164
            LNEL E+RNE  MN K    K+K + D+ V+ +  +    VL YDS+LH F G+LK+ W 
Sbjct: 1086 LNELEEMRNEAYMNSKISKDKLKRWHDQIVLRKEFQEGQNVLLYDSKLHIFLGKLKSRWN 1145

Query: 163  DPFVVKNEFHDGTVDIENPNNCNIFKV 83
            DP++V   + +G V I NP N  IFKV
Sbjct: 1146 DPYLVHKAYLNGVVKITNPKNGCIFKV 1172


Top