BLASTX nr result
ID: Papaver23_contig00027982
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver23_contig00027982
(528 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003595992.1| U5 small nuclear ribonucleoprotein 200 kDa h... 109 3e-22
ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuc... 103 3e-21
ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotei... 103 3e-21
ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotei... 105 3e-21
ref|XP_003531516.1| PREDICTED: U5 small nuclear ribonucleoprotei... 105 4e-21
>ref|XP_003595992.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Medicago
truncatula] gi|355485040|gb|AES66243.1| U5 small nuclear
ribonucleoprotein 200 kDa helicase [Medicago truncatula]
Length = 2223
Score = 109 bits (272), Expect = 3e-22
Identities = 78/166 (46%), Positives = 95/166 (57%), Gaps = 9/166 (5%)
Frame = +3
Query: 57 RATAKERQKNKDKSNREEAR*LKEESTG-----RFKDTDRLRSGPVIGKDSVSAWLVGRA 221
RA+AKERQKN +KS REEAR LK+++ G R +D DR+R G +D S WL G+
Sbjct: 391 RASAKERQKNLEKSIREEARRLKDDTVGDGDKERDRDRDRIRRGAG-DRDGESGWLKGQR 449
Query: 222 VSIPRP*NHIFPSRGAY**SVSL-LPGPSGITAKDPGSSCACAYA*MRWLLVN---IKIS 389
+ N F G + LP S + + L N +KIS
Sbjct: 450 QMLDLD-NLTFEQGGLFMAKKKCDLPDGSYRHLEKGYEEIHVPALKAKPLDPNEKLLKIS 508
Query: 390 VMPNWAQPAFDRMT*LNRVQSKVYKTALFTAENLLLCAPTGAGKTN 527
MP+WAQPAF MT LNRVQSKVY+TALF +NLLLCAPTGAGKTN
Sbjct: 509 AMPDWAQPAFKGMTQLNRVQSKVYETALFKPDNLLLCAPTGAGKTN 554
>ref|XP_004165711.1| PREDICTED: LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein
200 kDa helicase-like [Cucumis sativus]
Length = 2175
Score = 103 bits (256), Expect(2) = 3e-21
Identities = 77/173 (44%), Positives = 97/173 (56%), Gaps = 16/173 (9%)
Frame = +3
Query: 57 RATAKERQKNKDKSNREEAR*LKEESTGRFKDTDRLRSGPVIGKDSVSAWLVGRAVSIPR 236
RATAKERQKN +KS REEAR LK+ES G D +R R PV +D + L G++ +
Sbjct: 385 RATAKERQKNLEKSIREEARRLKDESGG---DAERGRRDPV-ERDMDNGGLTGQSQLLDL 440
Query: 237 P*NHIFPSRGAY**SVSLLPGPSG----------------ITAKDPGSSCACAYA*MRWL 368
+ I +G+ + + P G + AK GS
Sbjct: 441 --DSIAFQQGSLLMANNKCVLPDGSYRHLGKGYEEIHVPKLNAKPFGSDEKF-------- 490
Query: 369 LVNIKISVMPNWAQPAFDRMT*LNRVQSKVYKTALFTAENLLLCAPTGAGKTN 527
+KI+ MP+WAQPAF MT LNRVQSKVY+TALF A+N+LLCAPTGAGKTN
Sbjct: 491 ---VKIASMPDWAQPAFKGMTQLNRVQSKVYETALFKADNVLLCAPTGAGKTN 540
Score = 23.5 bits (49), Expect(2) = 3e-21
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2
Query: 2 EIMGLGPDLASIL 40
E+M LGPDLA+IL
Sbjct: 366 EMMHLGPDLAAIL 378
>ref|XP_004147618.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
[Cucumis sativus]
Length = 2175
Score = 103 bits (256), Expect(2) = 3e-21
Identities = 77/173 (44%), Positives = 97/173 (56%), Gaps = 16/173 (9%)
Frame = +3
Query: 57 RATAKERQKNKDKSNREEAR*LKEESTGRFKDTDRLRSGPVIGKDSVSAWLVGRAVSIPR 236
RATAKERQKN +KS REEAR LK+ES G D +R R PV +D + L G++ +
Sbjct: 385 RATAKERQKNLEKSIREEARRLKDESGG---DAERGRRDPV-ERDMDNGGLTGQSQLLDL 440
Query: 237 P*NHIFPSRGAY**SVSLLPGPSG----------------ITAKDPGSSCACAYA*MRWL 368
+ I +G+ + + P G + AK GS
Sbjct: 441 --DSIAFQQGSLLMANNKCVLPDGSYRHLGKGYEEIHVPKLNAKPFGSDEKF-------- 490
Query: 369 LVNIKISVMPNWAQPAFDRMT*LNRVQSKVYKTALFTAENLLLCAPTGAGKTN 527
+KI+ MP+WAQPAF MT LNRVQSKVY+TALF A+N+LLCAPTGAGKTN
Sbjct: 491 ---VKIASMPDWAQPAFKGMTQLNRVQSKVYETALFKADNVLLCAPTGAGKTN 540
Score = 23.5 bits (49), Expect(2) = 3e-21
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2
Query: 2 EIMGLGPDLASIL 40
E+M LGPDLA+IL
Sbjct: 366 EMMHLGPDLAAIL 378
>ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
[Glycine max]
Length = 2183
Score = 105 bits (263), Expect = 3e-21
Identities = 76/176 (43%), Positives = 95/176 (53%), Gaps = 19/176 (10%)
Frame = +3
Query: 57 RATAKERQKNKDKSNREEAR*LKEESTGRFKDTDRLRSGPVIG-KDSVSAWLVGRAVSIP 233
RA+AKERQKN +KS REEAR LK+++ G R RS V+ +D S WL G+ +
Sbjct: 386 RASAKERQKNLEKSIREEARRLKDDTGGDGDKESRDRSRRVVADRDGESGWLKGQRQMLD 445
Query: 234 RP*NHIFPSRGAY**SVSLLPGPSG----------------ITAK--DPGSSCACAYA*M 359
+ I ++G + + P G + AK DP
Sbjct: 446 L--DSIAFAQGGFFMAKKKCDLPDGSYRHLSKGYEEIHVPALKAKPLDPNEKL------- 496
Query: 360 RWLLVNIKISVMPNWAQPAFDRMT*LNRVQSKVYKTALFTAENLLLCAPTGAGKTN 527
+KIS MP+WAQPAF MT LNRVQSKVY+TALF +NLLLCAPTGAGKTN
Sbjct: 497 ------VKISSMPDWAQPAFKGMTQLNRVQSKVYETALFQPDNLLLCAPTGAGKTN 546
>ref|XP_003531516.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
[Glycine max]
Length = 2183
Score = 105 bits (262), Expect = 4e-21
Identities = 77/177 (43%), Positives = 96/177 (54%), Gaps = 20/177 (11%)
Frame = +3
Query: 57 RATAKERQKNKDKSNREEAR*LKEES--TGRFKDTDRLRSGPVIGKDSVSAWLVGRAVSI 230
RA+AKERQKN +KS REEAR LK+++ G + DR R G V +D S WL G+ +
Sbjct: 386 RASAKERQKNLEKSIREEARRLKDDTGGDGDKESRDRSRRG-VADRDGESGWLKGQRQML 444
Query: 231 PRP*NHIFPSRGAY**SVSLLPGPSG----------------ITAK--DPGSSCACAYA* 356
+ I ++G + + P G + AK DP
Sbjct: 445 DL--DSIAFTQGGFFMAKKKCDLPDGSYRHLSKGYEEIHVPALKAKPLDPNEKL------ 496
Query: 357 MRWLLVNIKISVMPNWAQPAFDRMT*LNRVQSKVYKTALFTAENLLLCAPTGAGKTN 527
+KIS MP+WAQPAF MT LNRVQSKVY+TALF +NLLLCAPTGAGKTN
Sbjct: 497 -------VKISSMPDWAQPAFKGMTQLNRVQSKVYETALFKPDNLLLCAPTGAGKTN 546