BLASTX nr result

ID: Papaver23_contig00026602 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00026602
         (430 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003539631.1| PREDICTED: uncharacterized protein LOC100789...    58   9e-07
ref|XP_003543180.1| PREDICTED: nuclear pore complex protein Nup9...    55   8e-06
ref|XP_003543179.1| PREDICTED: nuclear pore complex protein Nup9...    55   8e-06

>ref|XP_003539631.1| PREDICTED: uncharacterized protein LOC100789177 [Glycine max]
          Length = 1007

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 43/116 (37%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
 Frame = -3

Query: 335 SQPAFGTNSSPAFGATNTSXXXXXXXXXXXXXXXXXXG--SQXXXXXXXXXXXXXGSQXX 162
           SQPAFG++S+PAFG++++S                                    GS   
Sbjct: 79  SQPAFGSSSTPAFGSSSSSFGGSSVFGQKPAFGGFGSTPTQTSPFGAAQPSQPAFGSSIF 138

Query: 161 XXXXXXXXXXXXXFCSTSAPAFGSTSTPAFGSTSTPAFGSTS-----AASTAPFGA 9
                        F +TS PAFG+TSTPAFG+TSTPAFG+TS     A ST  FGA
Sbjct: 139 GSSTPFGASSQPAFGATSTPAFGATSTPAFGATSTPAFGATSTPAFGATSTPAFGA 194


>ref|XP_003543180.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like isoform 2
           [Glycine max]
          Length = 1010

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 28/41 (68%), Positives = 32/41 (78%), Gaps = 5/41 (12%)
 Frame = -3

Query: 116 STSAPAFGSTSTPAFGSTSTPAFGSTS-----AASTAPFGA 9
           +TS PAFG+TSTPAFG+TSTPAFG+TS     A ST  FGA
Sbjct: 163 ATSTPAFGATSTPAFGATSTPAFGATSTPSFGATSTPAFGA 203


>ref|XP_003543179.1| PREDICTED: nuclear pore complex protein Nup98-Nup96-like isoform 1
           [Glycine max]
          Length = 1038

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 28/41 (68%), Positives = 32/41 (78%), Gaps = 5/41 (12%)
 Frame = -3

Query: 116 STSAPAFGSTSTPAFGSTSTPAFGSTS-----AASTAPFGA 9
           +TS PAFG+TSTPAFG+TSTPAFG+TS     A ST  FGA
Sbjct: 163 ATSTPAFGATSTPAFGATSTPAFGATSTPSFGATSTPAFGA 203


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