BLASTX nr result

ID: Papaver23_contig00024870 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00024870
         (516 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002522713.1| ATP-dependent RNA helicase, putative [Ricinu...   260   7e-68
emb|CBI15151.3| unnamed protein product [Vitis vinifera]              259   2e-67
ref|XP_002284415.1| PREDICTED: putative pre-mRNA-splicing factor...   259   2e-67
ref|NP_001185127.1| pre-mRNA-splicing factor ATP-dependent RNA h...   256   1e-66
ref|NP_174527.2| pre-mRNA-splicing factor ATP-dependent RNA heli...   256   1e-66

>ref|XP_002522713.1| ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223538063|gb|EEF39675.1| ATP-dependent RNA helicase,
           putative [Ricinus communis]
          Length = 756

 Score =  260 bits (665), Expect = 7e-68
 Identities = 128/169 (75%), Positives = 154/169 (91%), Gaps = 2/169 (1%)
 Frame = -2

Query: 503 NQEKRFATMVQRYRD-GAGDKMNPFAEQEAWEDHQIGKATLQYGSKNKK-MSDDYQYVFE 330
           N+EKRFA  +QRYRD  AGDKMNPFAEQEAWED+QIGKATL++GSKNKK +SDDYQ+VFE
Sbjct: 296 NEEKRFAAALQRYRDPNAGDKMNPFAEQEAWEDYQIGKATLKFGSKNKKQISDDYQFVFE 355

Query: 329 DQIDFIKASVLDGEKYEDQLTSDQPDSSSDKSELQELQAVRKTLPIYQYREDLLKAIEEH 150
           DQI+FIKASV+DG+K++DQL ++  D+S +KS  +++Q  RK+LPIY+YR++LL AIE+ 
Sbjct: 356 DQIEFIKASVMDGDKFDDQLPAESLDNSMEKSAFEKIQEDRKSLPIYKYRDELLAAIEKF 415

Query: 149 QVLVIVGETGSGKTTQIPQYLHEAGFTKRGKVGCTQPRRVAAMSVSARV 3
           QVLVIVGETGSGKTTQIPQYLHEAG+TKRGKVGCTQPRRVAAMSV+ARV
Sbjct: 416 QVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSVAARV 464


>emb|CBI15151.3| unnamed protein product [Vitis vinifera]
          Length = 954

 Score =  259 bits (662), Expect = 2e-67
 Identities = 128/171 (74%), Positives = 151/171 (88%), Gaps = 2/171 (1%)
 Frame = -2

Query: 509 GVNQEKRFATMVQRYRDG-AGDKMNPFAEQEAWEDHQIGKATLQYGSKNKKM-SDDYQYV 336
           GVNQEKRF+  +QRYRD  A DKMNPFAEQEAWE+HQIGKATL++GSK+K   SDDYQ V
Sbjct: 310 GVNQEKRFSVALQRYRDSSANDKMNPFAEQEAWEEHQIGKATLKFGSKDKNQKSDDYQLV 369

Query: 335 FEDQIDFIKASVLDGEKYEDQLTSDQPDSSSDKSELQELQAVRKTLPIYQYREDLLKAIE 156
           FEDQI+FIKASV+DG+K+ED L ++  D S  KSEL++LQ  RK LPIY YR++LLKA++
Sbjct: 370 FEDQIEFIKASVMDGDKFEDGLFAESHDDSVAKSELEKLQEDRKMLPIYPYRDELLKAVD 429

Query: 155 EHQVLVIVGETGSGKTTQIPQYLHEAGFTKRGKVGCTQPRRVAAMSVSARV 3
           +HQ+LVIVGETGSGKTTQIPQYLHE+G+TKRGKVGCTQPRRVAAMSV+ARV
Sbjct: 430 DHQILVIVGETGSGKTTQIPQYLHESGYTKRGKVGCTQPRRVAAMSVAARV 480


>ref|XP_002284415.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA
           helicase DHX16-like [Vitis vinifera]
          Length = 1056

 Score =  259 bits (662), Expect = 2e-67
 Identities = 128/171 (74%), Positives = 151/171 (88%), Gaps = 2/171 (1%)
 Frame = -2

Query: 509 GVNQEKRFATMVQRYRDG-AGDKMNPFAEQEAWEDHQIGKATLQYGSKNKKM-SDDYQYV 336
           GVNQEKRF+  +QRYRD  A DKMNPFAEQEAWE+HQIGKATL++GSK+K   SDDYQ V
Sbjct: 310 GVNQEKRFSVALQRYRDSSANDKMNPFAEQEAWEEHQIGKATLKFGSKDKNQKSDDYQLV 369

Query: 335 FEDQIDFIKASVLDGEKYEDQLTSDQPDSSSDKSELQELQAVRKTLPIYQYREDLLKAIE 156
           FEDQI+FIKASV+DG+K+ED L ++  D S  KSEL++LQ  RK LPIY YR++LLKA++
Sbjct: 370 FEDQIEFIKASVMDGDKFEDGLFAESHDDSVAKSELEKLQEDRKMLPIYPYRDELLKAVD 429

Query: 155 EHQVLVIVGETGSGKTTQIPQYLHEAGFTKRGKVGCTQPRRVAAMSVSARV 3
           +HQ+LVIVGETGSGKTTQIPQYLHE+G+TKRGKVGCTQPRRVAAMSV+ARV
Sbjct: 430 DHQILVIVGETGSGKTTQIPQYLHESGYTKRGKVGCTQPRRVAAMSVAARV 480


>ref|NP_001185127.1| pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
           [Arabidopsis thaliana] gi|332193372|gb|AEE31493.1|
           pre-mRNA-splicing factor ATP-dependent RNA helicase
           DHX16 [Arabidopsis thaliana]
          Length = 1034

 Score =  256 bits (654), Expect = 1e-66
 Identities = 126/171 (73%), Positives = 150/171 (87%), Gaps = 2/171 (1%)
 Frame = -2

Query: 509 GVNQEKRFATMVQRYRD-GAGDKMNPFAEQEAWEDHQIGKATLQYGSKNKKMSDDYQYVF 333
           GV+QEKRF+  VQRYRD  + +KMNPFAEQEAWEDHQIGKATL++G+KNK+ SDDYQ+VF
Sbjct: 289 GVDQEKRFSVAVQRYRDLDSTEKMNPFAEQEAWEDHQIGKATLKFGAKNKQASDDYQFVF 348

Query: 332 EDQIDFIKASVLDGEKYEDQLTSDQPDSS-SDKSELQELQAVRKTLPIYQYREDLLKAIE 156
           EDQI+FIK SV+ GE YED + + Q     ++K+ L+ELQ VR++LPIY YR+ LLKA+E
Sbjct: 349 EDQINFIKESVMAGENYEDAMDAKQKSQDLAEKTALEELQEVRRSLPIYTYRDQLLKAVE 408

Query: 155 EHQVLVIVGETGSGKTTQIPQYLHEAGFTKRGKVGCTQPRRVAAMSVSARV 3
           EHQVLVIVG+TGSGKTTQIPQYLHEAG+TKRGKVGCTQPRRVAAMSV+ARV
Sbjct: 409 EHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSVAARV 459


>ref|NP_174527.2| pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
           [Arabidopsis thaliana] gi|18377729|gb|AAL67014.1|
           putative RNA helicase [Arabidopsis thaliana]
           gi|22136924|gb|AAM91806.1| putative RNA helicase
           [Arabidopsis thaliana] gi|332193371|gb|AEE31492.1|
           pre-mRNA-splicing factor ATP-dependent RNA helicase
           DHX16 [Arabidopsis thaliana]
          Length = 1044

 Score =  256 bits (654), Expect = 1e-66
 Identities = 126/171 (73%), Positives = 150/171 (87%), Gaps = 2/171 (1%)
 Frame = -2

Query: 509 GVNQEKRFATMVQRYRD-GAGDKMNPFAEQEAWEDHQIGKATLQYGSKNKKMSDDYQYVF 333
           GV+QEKRF+  VQRYRD  + +KMNPFAEQEAWEDHQIGKATL++G+KNK+ SDDYQ+VF
Sbjct: 299 GVDQEKRFSVAVQRYRDLDSTEKMNPFAEQEAWEDHQIGKATLKFGAKNKQASDDYQFVF 358

Query: 332 EDQIDFIKASVLDGEKYEDQLTSDQPDSS-SDKSELQELQAVRKTLPIYQYREDLLKAIE 156
           EDQI+FIK SV+ GE YED + + Q     ++K+ L+ELQ VR++LPIY YR+ LLKA+E
Sbjct: 359 EDQINFIKESVMAGENYEDAMDAKQKSQDLAEKTALEELQEVRRSLPIYTYRDQLLKAVE 418

Query: 155 EHQVLVIVGETGSGKTTQIPQYLHEAGFTKRGKVGCTQPRRVAAMSVSARV 3
           EHQVLVIVG+TGSGKTTQIPQYLHEAG+TKRGKVGCTQPRRVAAMSV+ARV
Sbjct: 419 EHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSVAARV 469


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