BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00017294
         (1149 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chlor...   366   e-124
ref|XP_002301949.1| predicted protein [Populus trichocarpa] gi|2...   340   e-116
ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [...   340   e-115
ref|XP_003603819.1| RNA pseudourine synthase [Medicago truncatul...   337   e-115
ref|XP_003523282.1| PREDICTED: RNA pseudourine synthase 2, chlor...   332   e-113

>ref|XP_003634352.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Vitis
           vinifera] gi|302141717|emb|CBI18920.3| unnamed protein
           product [Vitis vinifera]
          Length = 433

 Score =  366 bits (940), Expect(2) = e-124
 Identities = 187/259 (72%), Positives = 217/259 (83%), Gaps = 5/259 (1%)
 Frame = +3

Query: 207 DYAGAKLEEI-----NGGEKLRLDTWISSRMSGVSRARVQSSIKSGLVKVNGRVVNKVSH 371
           +YAG +LEE      +   KLRLD+WISSR+ G+SRARVQSSI+SGLV VN R+V+KVSH
Sbjct: 57  NYAGVRLEETVVDVNSDSGKLRLDSWISSRIIGISRARVQSSIRSGLVSVNDRIVDKVSH 116

Query: 372 VIRAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVHPAPGNRTGTLVS 551
           VIRAGDKVNCTISE+QPLRAEPEDIPL+IV+ED+HVLVVNKPAHMVVHPAPGN +GTLV+
Sbjct: 117 VIRAGDKVNCTISELQPLRAEPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNASGTLVN 176

Query: 552 GILHHCRLPTVALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSSAALIRPGIVHRL 731
           GILHHC LPTVALP+ D  SE +DISD+E   F + QN        +    IRPGIVHRL
Sbjct: 177 GILHHCSLPTVALPNRD--SEEDDISDDEFNSFAAGQNCG------TCETNIRPGIVHRL 228

Query: 732 DKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRVDIAIGRDTNNRL 911
           DKGTSGLLVVAKDEHSHAHLSEQFKLH+IHRVY+SLT+GVP+P SGRV+I +GRD NNR+
Sbjct: 229 DKGTSGLLVVAKDEHSHAHLSEQFKLHSIHRVYISLTSGVPTPLSGRVEIPVGRDPNNRI 288

Query: 912 RMTAVNGSNNTKQARNAAS 968
           RMTAV G +N+ QAR+AAS
Sbjct: 289 RMTAVPGPSNSGQARHAAS 307



 Score =  106 bits (265), Expect(2) = e-124
 Identities = 50/61 (81%), Positives = 55/61 (90%)
 Frame = +2

Query: 965  QYRVIEVLAGGASAMVEWRLETGRTHQIRAHAKYLGYPLLGDEVYGGTKGMALSLLRHKT 1144
            +Y+VIE+LA G SA+VEWRLETGRTHQIRAHAKYLG PLLGDEVYGGTK MALSLLR + 
Sbjct: 308  RYKVIEILAAGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLRPRI 367

Query: 1145 P 1147
            P
Sbjct: 368  P 368


>ref|XP_002301949.1| predicted protein [Populus trichocarpa] gi|222843675|gb|EEE81222.1|
           predicted protein [Populus trichocarpa]
          Length = 444

 Score =  340 bits (871), Expect(2) = e-116
 Identities = 181/271 (66%), Positives = 216/271 (79%), Gaps = 5/271 (1%)
 Frame = +3

Query: 171 STEEDHFVRNSG---DYAGAKLEEINGGE--KLRLDTWISSRMSGVSRARVQSSIKSGLV 335
           ST E +  +N G   +Y+G KLEE    +  K RLD+WISSR+SG+SRARVQSSIKSGLV
Sbjct: 62  STREPNSNQNPGQRINYSGVKLEESVDSKSGKSRLDSWISSRISGISRARVQSSIKSGLV 121

Query: 336 KVNGRVVNKVSHVIRAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVH 515
            VNG+V++KVSH ++AGDKVNC ISE+QPLRAEPE+IPL+IV+ED++VLVVNKPAHMVVH
Sbjct: 122 SVNGKVIDKVSHNVKAGDKVNCVISELQPLRAEPENIPLDIVYEDENVLVVNKPAHMVVH 181

Query: 516 PAPGNRTGTLVSGILHHCRLPTVALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSS 695
           PAPGN TGTLV+GILHHC LPTV+    ++ S  ED+SD++ EG          L S S 
Sbjct: 182 PAPGNATGTLVNGILHHCSLPTVS--SQEVLSGAEDVSDDDDEG----------LCSSSY 229

Query: 696 AALIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRV 875
           AA +RPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTI RVYVSLT GVP+P +GR+
Sbjct: 230 AASVRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIKRVYVSLTCGVPAPMAGRI 289

Query: 876 DIAIGRDTNNRLRMTAVNGSNNTKQARNAAS 968
           D+ IGRD +NR+RM A+    N  QAR+AAS
Sbjct: 290 DVPIGRDVSNRIRMAAI-VEPNRGQARHAAS 319



 Score =  106 bits (265), Expect(2) = e-116
 Identities = 49/60 (81%), Positives = 56/60 (93%)
 Frame = +2

Query: 965  QYRVIEVLAGGASAMVEWRLETGRTHQIRAHAKYLGYPLLGDEVYGGTKGMALSLLRHKT 1144
            +Y+VIE+LAGG SA+VEWRLETGRTHQIRAHAKY+G PLLGDEVYGGT+ MALSLLR +T
Sbjct: 320  RYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEVYGGTQNMALSLLRSRT 379


>ref|XP_002519370.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
           gi|223541437|gb|EEF42987.1| ribosomal pseudouridine
           synthase, putative [Ricinus communis]
          Length = 399

 Score =  340 bits (873), Expect(2) = e-115
 Identities = 174/263 (66%), Positives = 206/263 (78%), Gaps = 5/263 (1%)
 Frame = +3

Query: 195 RNSGDYAGAKLEEI-----NGGEKLRLDTWISSRMSGVSRARVQSSIKSGLVKVNGRVVN 359
           +N  +Y G +LEE          KLRLD+WISSR+SG+SRARVQSSIKSGLV VNGRVV+
Sbjct: 48  QNHTNYGGIRLEETVQVVHAKSVKLRLDSWISSRISGISRARVQSSIKSGLVSVNGRVVD 107

Query: 360 KVSHVIRAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVHPAPGNRTG 539
           KVSH ++ GDKV CTISE+QPLRAEPED+PL+IV+ED+H+LVVNKP HMVVHPAPGN TG
Sbjct: 108 KVSHNVKFGDKVTCTISELQPLRAEPEDMPLDIVYEDEHLLVVNKPPHMVVHPAPGNPTG 167

Query: 540 TLVSGILHHCRLPTVALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSSAALIRPGI 719
           TLV+GILHHC LPTVA+   ++ S+ ED SD++   + S   SS           IRPGI
Sbjct: 168 TLVNGILHHCNLPTVAISSQEVLSDAEDRSDDDERSYSSSCESS-----------IRPGI 216

Query: 720 VHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRVDIAIGRDT 899
           VHRLDKGTSGLLVVAKDEH+HAHLSEQFK HTI RVY+SLT+GVPS  +GR+DI IGRD 
Sbjct: 217 VHRLDKGTSGLLVVAKDEHAHAHLSEQFKQHTIQRVYISLTSGVPSALTGRIDIPIGRDV 276

Query: 900 NNRLRMTAVNGSNNTKQARNAAS 968
           NNR+RMTA+ G     +AR+AAS
Sbjct: 277 NNRIRMTAIPGPIKQGRARHAAS 299



 Score =  103 bits (258), Expect(2) = e-115
 Identities = 47/61 (77%), Positives = 55/61 (90%)
 Frame = +2

Query: 965  QYRVIEVLAGGASAMVEWRLETGRTHQIRAHAKYLGYPLLGDEVYGGTKGMALSLLRHKT 1144
            +++V+E LAGG SA+VEWRLETGRTHQIRAHAKY+G PLLGDEVYGGT+ MALSLLR + 
Sbjct: 300  RFKVVETLAGGGSALVEWRLETGRTHQIRAHAKYIGIPLLGDEVYGGTRSMALSLLRPRI 359

Query: 1145 P 1147
            P
Sbjct: 360  P 360


>ref|XP_003603819.1| RNA pseudourine synthase [Medicago truncatula]
           gi|355492867|gb|AES74070.1| RNA pseudourine synthase
           [Medicago truncatula]
          Length = 465

 Score =  337 bits (864), Expect(2) = e-115
 Identities = 183/283 (64%), Positives = 219/283 (77%), Gaps = 14/283 (4%)
 Frame = +3

Query: 162 TDESTEEDHFVRNSGDYAGAKLEEI--NGG---EKLRLDTWISSRMSGVSRARVQSSIKS 326
           ++ STEE        +YAG  LEEI  +GG    KLRLD+WISSR++G+SRARVQSSIK+
Sbjct: 56  SNSSTEEP-----KSNYAGVLLEEIVHDGGIKSGKLRLDSWISSRINGISRARVQSSIKA 110

Query: 327 GLVKVNGRVVNKVSHVI---------RAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHV 479
           GLV VNGRVV+K+S V+         RAGD++ CTI+E+Q LRA PE+IPL+IV+EDDH+
Sbjct: 111 GLVHVNGRVVDKLSIVVILEQVSFNVRAGDEIKCTIAELQQLRAVPENIPLDIVYEDDHL 170

Query: 480 LVVNKPAHMVVHPAPGNRTGTLVSGILHHCRLPTVALPDNDIFSETEDISDEELEGFYSD 659
           LV+NKPAHMVVHPAPGN +GTLV+GILHHC LP V     +  S+TED SD+EL GF S 
Sbjct: 171 LVINKPAHMVVHPAPGNTSGTLVNGILHHCNLPNVEFSKEEALSDTED-SDDELNGFSSQ 229

Query: 660 QNSSEDLNSRSSAALIRPGIVHRLDKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSL 839
            +SS  L+SR S A IRPGIVHRLDKGTSGLLVVAK+EHSH  LSEQFKL TI RVYVSL
Sbjct: 230 SSSSVGLDSRLSMASIRPGIVHRLDKGTSGLLVVAKNEHSHMKLSEQFKLRTIKRVYVSL 289

Query: 840 TNGVPSPASGRVDIAIGRDTNNRLRMTAVNGSNNTKQARNAAS 968
           T GVP+P SGRV++ +GRD NNRLRM AV G  N+ +AR+AAS
Sbjct: 290 TAGVPTPVSGRVEVPVGRDPNNRLRMIAVAGLVNSVKARHAAS 332



 Score =  104 bits (259), Expect(2) = e-115
 Identities = 48/60 (80%), Positives = 55/60 (91%)
 Frame = +2

Query: 965  QYRVIEVLAGGASAMVEWRLETGRTHQIRAHAKYLGYPLLGDEVYGGTKGMALSLLRHKT 1144
            +Y+VIE+LAGG+ A+VEW+LETGRTHQIRAHAKYLG PLLGDEVYGGTK M LSLLR +T
Sbjct: 333  RYKVIEILAGGSCALVEWKLETGRTHQIRAHAKYLGVPLLGDEVYGGTKSMVLSLLRPRT 392


>ref|XP_003523282.1| PREDICTED: RNA pseudourine synthase 2, chloroplastic-like [Glycine
           max]
          Length = 450

 Score =  332 bits (852), Expect(2) = e-113
 Identities = 171/260 (65%), Positives = 209/260 (80%), Gaps = 6/260 (2%)
 Frame = +3

Query: 207 DYAGAKLEEIN----GGEKLRLDTWISSRMSGVSRARVQSSIKSGLVKVNGRVVNKVSHV 374
           +++G +LEE      G  KLRLD WISSR++G+SRARVQSSIKSGLV VNGRVV+KVS  
Sbjct: 63  NFSGVRLEEAVDSRIGSGKLRLDNWISSRINGISRARVQSSIKSGLVHVNGRVVDKVSFN 122

Query: 375 IRAGDKVNCTISEMQPLRAEPEDIPLNIVFEDDHVLVVNKPAHMVVHPAPGNRTGTLVSG 554
           +++GD++ CTI+E+Q LRA P++IPL+IV+ED+HVLV+NKPAHMVVHPAPGN +GTLV+G
Sbjct: 123 VKSGDEIKCTIAELQNLRAVPQNIPLDIVYEDEHVLVINKPAHMVVHPAPGNTSGTLVNG 182

Query: 555 ILHHCRLPTVALPDNDIFSETEDISDEELEGFYSDQNSSEDLNSRSSAA--LIRPGIVHR 728
           ILHHC LP V    ++  S+TED SD+E   + S  +S E LNSR S A   IRPGIVHR
Sbjct: 183 ILHHCNLPNVEFSKDEALSDTED-SDDEFNSYISLASSCEGLNSRLSVASNSIRPGIVHR 241

Query: 729 LDKGTSGLLVVAKDEHSHAHLSEQFKLHTIHRVYVSLTNGVPSPASGRVDIAIGRDTNNR 908
           LDKGTSGLLVVAKDEHSH  LSEQFK  TI R+YVSLT GVP+P +GRV++ +GRDTNNR
Sbjct: 242 LDKGTSGLLVVAKDEHSHMKLSEQFKQRTIKRLYVSLTAGVPTPVAGRVEVPVGRDTNNR 301

Query: 909 LRMTAVNGSNNTKQARNAAS 968
           +RMTAV G  N+K+AR AAS
Sbjct: 302 IRMTAVTGPVNSKKARYAAS 321



 Score =  104 bits (260), Expect(2) = e-113
 Identities = 47/61 (77%), Positives = 56/61 (91%)
 Frame = +2

Query: 965  QYRVIEVLAGGASAMVEWRLETGRTHQIRAHAKYLGYPLLGDEVYGGTKGMALSLLRHKT 1144
            +Y+VIE+LAGG+ ++VEW+LETGRTHQIRAHAKYLG PLLGDE+YGGTK M LSLLR +T
Sbjct: 322  RYKVIEILAGGSCSLVEWKLETGRTHQIRAHAKYLGVPLLGDELYGGTKSMVLSLLRPRT 381

Query: 1145 P 1147
            P
Sbjct: 382  P 382