BLASTX nr result
ID: Papaver23_contig00015947
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver23_contig00015947
(1352 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI40152.3| unnamed protein product [Vitis vinifera] 64 3e-14
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub... 64 3e-14
ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocar... 60 3e-13
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 66 8e-13
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub... 66 8e-13
>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
Length = 1890
Score = 53.5 bits (127), Expect(2) = 3e-14
Identities = 30/69 (43%), Positives = 36/69 (52%), Gaps = 19/69 (27%)
Frame = +2
Query: 434 LVATAISNLAYKVGFDASASSNSS*ELMK-------------------YYLKDCSCGRTF 556
L ATA+SN AYK D+S SSNSS ELMK YL DC CGR +
Sbjct: 895 LAATAMSNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKY 954
Query: 557 CKENVLFRI 583
C+EN + +
Sbjct: 955 CRENAAYLV 963
Score = 52.0 bits (123), Expect(2) = 3e-14
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +1
Query: 334 VGNACSNSVIQFDYIVEAGTKDKNFFPAGEPVG 432
V N CSNS+IQF+Y V+A TK ++FFPAGEPVG
Sbjct: 861 VRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVG 893
Score = 63.9 bits (154), Expect(2) = 6e-13
Identities = 33/69 (47%), Positives = 45/69 (65%)
Frame = +2
Query: 158 NVMSSDVSVSMLKKVLKQAAIVKI*ISGPPNFVSDEVEDNKLHLAVAQYLHARGSTKSQL 337
++MSSD+SVSMLKKVLKQ ++K SG PNF S ++E N L ++ QYL RG+ K+
Sbjct: 288 SIMSSDLSVSMLKKVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSR 347
Query: 338 EMPVATRSS 364
+ SS
Sbjct: 348 SLDTRFGSS 356
Score = 37.4 bits (85), Expect(2) = 6e-13
Identities = 20/34 (58%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Frame = +1
Query: 43 IEFLRR-----QRKSSPKGYFPQDCYILQKLPVP 129
+E LRR ++K KGYFPQD YILQ LPVP
Sbjct: 241 MEILRRIPEDTRKKLVRKGYFPQDGYILQYLPVP 274
>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
Length = 1830
Score = 53.5 bits (127), Expect(2) = 3e-14
Identities = 30/69 (43%), Positives = 36/69 (52%), Gaps = 19/69 (27%)
Frame = +2
Query: 434 LVATAISNLAYKVGFDASASSNSS*ELMK-------------------YYLKDCSCGRTF 556
L ATA+SN AYK D+S SSNSS ELMK YL DC CGR +
Sbjct: 835 LAATAMSNPAYKAVLDSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKY 894
Query: 557 CKENVLFRI 583
C+EN + +
Sbjct: 895 CRENAAYLV 903
Score = 52.0 bits (123), Expect(2) = 3e-14
Identities = 23/33 (69%), Positives = 28/33 (84%)
Frame = +1
Query: 334 VGNACSNSVIQFDYIVEAGTKDKNFFPAGEPVG 432
V N CSNS+IQF+Y V+A TK ++FFPAGEPVG
Sbjct: 801 VRNVCSNSIIQFEYGVKARTKPQHFFPAGEPVG 833
Score = 63.9 bits (154), Expect(2) = 6e-13
Identities = 33/69 (47%), Positives = 45/69 (65%)
Frame = +2
Query: 158 NVMSSDVSVSMLKKVLKQAAIVKI*ISGPPNFVSDEVEDNKLHLAVAQYLHARGSTKSQL 337
++MSSD+SVSMLKKVLKQ ++K SG PNF S ++E N L ++ QYL RG+ K+
Sbjct: 228 SIMSSDLSVSMLKKVLKQIEVIKGSRSGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSR 287
Query: 338 EMPVATRSS 364
+ SS
Sbjct: 288 SLDTRFGSS 296
Score = 37.4 bits (85), Expect(2) = 6e-13
Identities = 20/34 (58%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Frame = +1
Query: 43 IEFLRR-----QRKSSPKGYFPQDCYILQKLPVP 129
+E LRR ++K KGYFPQD YILQ LPVP
Sbjct: 181 MEILRRIPEDTRKKLVRKGYFPQDGYILQYLPVP 214
>ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocarpa]
gi|222841357|gb|EEE78904.1| RNA polymerase IV subunit
[Populus trichocarpa]
Length = 924
Score = 59.7 bits (143), Expect(3) = 3e-13
Identities = 31/61 (50%), Positives = 42/61 (68%)
Frame = +2
Query: 161 VMSSDVSVSMLKKVLKQAAIVKI*ISGPPNFVSDEVEDNKLHLAVAQYLHARGSTKSQLE 340
VMSSD+S+SMLKKVLKQA +++ SG PNF + + E L V QYL RG+TK+ +
Sbjct: 231 VMSSDLSISMLKKVLKQAEVIRSSRSGAPNFDAHKDEATSLQSMVDQYLQVRGTTKTSRD 290
Query: 341 M 343
+
Sbjct: 291 V 291
Score = 39.3 bits (90), Expect(3) = 3e-13
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = +1
Query: 61 QRKSSPKGYFPQDCYILQKLPVP 129
++K S KGYFPQD YILQ+LPVP
Sbjct: 194 RKKLSGKGYFPQDGYILQQLPVP 216
Score = 22.7 bits (47), Expect(3) = 3e-13
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 33 EILNRILAETKKKLA 77
+IL RI AET+KKL+
Sbjct: 184 QILKRIPAETRKKLS 198
Score = 46.2 bits (108), Expect(2) = 3e-10
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +1
Query: 334 VGNACSNSVIQFDYIVEAGTKDKNFFPAGEPVG 432
V N SNS+IQF+Y V+ GT+ ++ FPAGEPVG
Sbjct: 803 VRNVSSNSIIQFEYGVKVGTESQSLFPAGEPVG 835
Score = 46.2 bits (108), Expect(2) = 3e-10
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 19/69 (27%)
Frame = +2
Query: 434 LVATAISNLAYKVGFDASASSNSS*ELMK-------------------YYLKDCSCGRTF 556
L ATA+SN AYK D++ SSN S ++MK YL DC CGR +
Sbjct: 837 LAATAMSNPAYKAVLDSTPSSNCSWDMMKEILLCKVGFKNDLADRRVILYLNDCGCGRNY 896
Query: 557 CKENVLFRI 583
C+E + +
Sbjct: 897 CQERAAYLV 905
>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E
subunit 1-like [Cucumis sativus]
Length = 2019
Score = 66.2 bits (160), Expect(2) = 8e-13
Identities = 36/57 (63%), Positives = 41/57 (71%)
Frame = +2
Query: 161 VMSSDVSVSMLKKVLKQAAIVKI*ISGPPNFVSDEVEDNKLHLAVAQYLHARGSTKS 331
VMSSD +VSMLKK+LKQ I+K SG PNF S EVE N L LAV QYL RG+ K+
Sbjct: 259 VMSSDPAVSMLKKILKQVEIIKGSRSGAPNFESHEVEANDLQLAVDQYLQVRGTVKA 315
Score = 34.7 bits (78), Expect(2) = 8e-13
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +1
Query: 61 QRKSSPKGYFPQDCYILQKLPVP 129
++K + +GY+PQD YILQ LPVP
Sbjct: 222 RKKLAGRGYYPQDGYILQYLPVP 244
Score = 45.4 bits (106), Expect(2) = 1e-07
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 19/67 (28%)
Frame = +2
Query: 434 LVATAISNLAYKVGFDASASSNSS*ELMK-------------------YYLKDCSCGRTF 556
L ATA+S AYK D++ SSNSS ++MK YL +C+CGR +
Sbjct: 866 LAATAMSTPAYKAVLDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKY 925
Query: 557 CKENVLF 577
C EN +
Sbjct: 926 CNENAAY 932
Score = 37.7 bits (86), Expect(2) = 1e-07
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +1
Query: 334 VGNACSNSVIQFDYIVEAG-TKDKNFFPAGEPVG 432
V N CSNS+IQ +Y ++AG + + FP GEPVG
Sbjct: 831 VRNVCSNSIIQLEYGMKAGMMQPYSLFPPGEPVG 864
>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
sativus]
Length = 1959
Score = 66.2 bits (160), Expect(2) = 8e-13
Identities = 36/57 (63%), Positives = 41/57 (71%)
Frame = +2
Query: 161 VMSSDVSVSMLKKVLKQAAIVKI*ISGPPNFVSDEVEDNKLHLAVAQYLHARGSTKS 331
VMSSD +VSMLKK+LKQ I+K SG PNF S EVE N L LAV QYL RG+ K+
Sbjct: 229 VMSSDPAVSMLKKILKQVEIIKGSRSGAPNFESHEVEANDLQLAVDQYLQVRGTVKA 285
Score = 34.7 bits (78), Expect(2) = 8e-13
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +1
Query: 61 QRKSSPKGYFPQDCYILQKLPVP 129
++K + +GY+PQD YILQ LPVP
Sbjct: 192 RKKLAGRGYYPQDGYILQYLPVP 214
Score = 45.4 bits (106), Expect(2) = 1e-07
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 19/67 (28%)
Frame = +2
Query: 434 LVATAISNLAYKVGFDASASSNSS*ELMK-------------------YYLKDCSCGRTF 556
L ATA+S AYK D++ SSNSS ++MK YL +C+CGR +
Sbjct: 836 LAATAMSTPAYKAVLDSTPSSNSSWDMMKEILLCKVSFKNEPIDRRVILYLNNCACGRKY 895
Query: 557 CKENVLF 577
C EN +
Sbjct: 896 CNENAAY 902
Score = 37.7 bits (86), Expect(2) = 1e-07
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +1
Query: 334 VGNACSNSVIQFDYIVEAG-TKDKNFFPAGEPVG 432
V N CSNS+IQ +Y ++AG + + FP GEPVG
Sbjct: 801 VRNVCSNSIIQLEYGMKAGMMQPYSLFPPGEPVG 834