BLASTX nr result
ID: Papaver23_contig00010431
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Papaver23_contig00010431 (4740 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] 1181 0.0 gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] 1094 0.0 gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] 1090 0.0 gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] 1086 0.0 gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 1083 0.0 >gb|AAT85194.1| putative polyprotein [Oryza sativa Japonica Group] Length = 1241 Score = 1181 bits (3055), Expect = 0.0 Identities = 631/1257 (50%), Positives = 818/1257 (65%), Gaps = 24/1257 (1%) Frame = +2 Query: 2 LTSELYLKRRLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSLPPSY 181 LTS+++LK++L ++ S+MDH++ F +I +DL ++ V + D +ILLCSLP SY Sbjct: 5 LTSKMHLKQKLFLHKLQDDGSVMDHLSAFKEIVADLESMEVKYDEEDLGLILLCSLPSSY 64 Query: 182 DAFVDYLLSGKTDEGEDKDKLVFDDVVSALQAKALRKQEFSDE---AQVEGLFVDXXXXX 352 F D +L + D L +V AL AK K+ E +Q EGL V Sbjct: 65 ANFRDTILYSR-------DTLTLKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQE 117 Query: 353 XXXXXXXXXXXXXDIE-----------CYYCRKPGHIRADCLKLKARDEKREKSDSKNVV 499 C YC++ GH ++C KL+ +D++ K K Sbjct: 118 KNTNNKSRDKSSSIYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTRKYIPKG-- 175 Query: 500 ASVAEGSEALEDPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKDCFTTYREVNGG 679 EG A+ E ++ + +D W+LD+ +YHMCP++D F TY V GG Sbjct: 176 KKEEEGKAAVVTDEKSDAELLVAYAGCAQTSDQWILDTACTYHMCPNRDWFATYEAVQGG 235 Query: 680 TVMMGNSNACKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKYAAEY 856 TV+MG+ C+ G+GTVQ++ G I TL +VRH+P+L++SLISL L+ GYKY+ Sbjct: 236 TVLMGDDTPCEVAGIGTVQIKMFDGCIRTLLDVRHIPNLKRSLISLCTLDRKGYKYSGGD 295 Query: 857 GFLKVFYNGSLKMTGE-RHGNLYFLRGDIVCGG-AMVSQSIDEKQVESTRLWHMRLGHMS 1030 G LKV + M + ++ NLY LRG + G A VS S+ ++T LWHMRLGHMS Sbjct: 296 GILKVTKGSLVVMKADIKYANLYHLRGTTILGNVAAVSDSLSNS--DATNLWHMRLGHMS 353 Query: 1031 EKGMSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSR 1210 E G++ LS +GLL G+ KL FCEHCIFGK R F T+ H T+G+LDY+HSD+WGP+R Sbjct: 354 EIGLAELSKRGLLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPAR 413 Query: 1211 TVSKGGARWFVTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGG 1390 S GGAR+ +T +DD+SR+VW Y +KHK + +VFK+WKTMVE+Q R VK +R+DNG Sbjct: 414 KTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTERKVKILRTDNGM 473 Query: 1391 EYIEDPLKEFCEEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSNASLDKIWWAEA 1570 E K +C+ +GIVRH+TV TPQQNGVAERMNRT++ +ARCMLSNASL K +WAEA Sbjct: 474 ELCSKIFKSYCKSEGIVRHYTVPHTPQQNGVAERMNRTIISKARCMLSNASLPKQFWAEA 533 Query: 1571 VNTACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHVKEDKLGVRAKKAIF 1750 V+TACYL+NRSPS AI K+P+EVW+G+ NYS+LRVFGC AY HV KL R K IF Sbjct: 534 VSTACYLINRSPSYAIDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRVIKCIF 593 Query: 1751 LGYPLGVKGYRLWCPELNKFIISRDVTFNERAMLDSKKSTDWDSQIXXXXXXXXXXXXMQ 1930 LGY GVKGY+LWCPE K +ISR+V F+E ML K ST+ +Q Sbjct: 594 LGYLSGVKGYKLWCPETKKVVISRNVVFHESIMLHDKPSTN-------VPVESQEKVSVQ 646 Query: 1931 VEQRVPSSSTIXXXXXXXXXXXXXXXXXXXXSTQQQIE-NIPSLTSQRERRPPTRYGFD- 2104 VE + S QQ + +I +R +PP RY + Sbjct: 647 VEHLISSGHAPEKEDVAINQDAPVIEDSDSSIVQQSPKRSIAKDRPKRNTKPPRRYIEEA 706 Query: 2105 EYASYALSVFED-----EPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGR 2269 +YALSV E+ EP T+ +A+ + W TAM +EM+SL KNH+WEL KLPK + Sbjct: 707 NIVAYALSVAEEIEGNAEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHSWELEKLPKEK 766 Query: 2270 KKIGCKWVYTVKDGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVL 2449 K I CKW++ K+G+ S RYKARLVAKGY+Q G+D+N+VFSPVVKH+SIR L Sbjct: 767 KPIRCKWIFKRKEGMSPS----DEARYKARLVAKGYSQIPGIDFNDVFSPVVKHSSIRTL 822 Query: 2450 LAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSP 2629 L+ VA D ELEQ+DVKTAFLHG LEEDIYM QP G+ V GKE+ VCRL+KSLYGLKQSP Sbjct: 823 LSIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVPGKENLVCRLKKSLYGLKQSP 882 Query: 2630 RQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKK 2809 RQWYKRFD+FML QK+ RS YD CVY K GS +YLLLYVDDMLIAAK KSEI LK Sbjct: 883 RQWYKRFDSFMLSQKFRRSNYDSCVYL-KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKA 941 Query: 2810 QLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPS 2989 QLS EFEMKDLG AKKILGMEITR+R GKL L+QK Y+EKVL RF MH++K +S + + Sbjct: 942 QLSSEFEMKDLGAAKKILGMEITRERHSGKLYLSQKCYIEKVLHRFNMHDAKLVSTLLAA 1001 Query: 2990 TVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAH 3169 +LS LCP + ++E+MS+VPY++AV SLMYAMVC+RPD + A+ +VSRYMANPG+ H Sbjct: 1002 HFRLSSDLCPQSAYDIEYMSRVPYSSAVSSLMYAMVCSRPDLSHALSVVSRYMANPGKEH 1061 Query: 3170 WYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPIS 3349 W AV+ I RYL GT L F + S + G+VDSD+AGD D+ RS +GY FT+ G +S Sbjct: 1062 WKAVQWIFRYLRGTSSACLQFGR-SSDGLVGYVDSDFAGDLDRRRSLTGYVFTVGGCAVS 1120 Query: 3350 WRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKN 3529 W++ LQ VALSTTEAEY+A++EA KE +WLRGL +L + + + CDSQSAI L K+ Sbjct: 1121 WKASLQATVALSTTEAEYMAISEACKEVIWLRGLYTELCGVTSCINIFCDSQSAICLTKD 1180 Query: 3530 QVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 3700 Q++H RTKHID+RYH +R V+ G V++ K+ T DNP DM+TK VP KFE C SL+ Sbjct: 1181 QMFHERTKHIDLRYHFIRGVIAEGDVKVCKISTHDNPVDMMTKPVPATKFELCSSLV 1237 >gb|ACL97384.1| Gag-Pol polyprotein [Medicago truncatula] Length = 1305 Score = 1094 bits (2829), Expect = 0.0 Identities = 591/1250 (47%), Positives = 792/1250 (63%), Gaps = 18/1250 (1%) Frame = +2 Query: 2 LTSELYLKRRLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSLPPSY 181 L + ++LKRRL+ RM S+ DHIN N + S L+ I++ +++ +LL SLP SY Sbjct: 92 LHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSY 151 Query: 182 DAFVDYLLSGKTDEGEDKDKLVFDDVVSAL---QAKALRKQEFSDEAQ-------VEGLF 331 D + + + D L FDDV A+ +++ K+E S+ ++ G Sbjct: 152 DQLIINITNNNI-----ADTLHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRS 206 Query: 332 VDXXXXXXXXXXXXXXXXXXDIECYYCRKPGHIRADCLKLKARDEKR-EKSDSKNVVASV 508 + +I+CY C GH++ +C +K EK E S S+ VAS Sbjct: 207 TERGPSGSQNHGRSKSRRKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVAST 266 Query: 509 AEGSEALEDPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVM 688 ++ E L + E + + LND W++DSGA++HM P +D F +Y ++ G+V Sbjct: 267 SDDGEIL------YSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVY 320 Query: 689 MGNSNACKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFL 865 MGN +A + GVGT++++ H G + + VRHV L+K+L+S+G L+ LG K E G L Sbjct: 321 MGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGIL 380 Query: 866 KVFYNGSLKMTGER-HGNLYFLRGDIVC-GGAMVSQSIDEKQVESTRLWHMRLGHMSEKG 1039 KV + M E+ NLY L GD + A V+ + E E+T +WH RLGHMSE+G Sbjct: 381 KVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAASQE---ETTMMWHQRLGHMSERG 437 Query: 1040 MSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVS 1219 + VL + LL G KT L FCEHC+ KQ R F ++ +LD IHSDVW S +S Sbjct: 438 LKVLVERNLLHGLKTVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVW-ESPELS 496 Query: 1220 KGGARWFVTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYI 1399 GGAR+FV+FIDD+SRR+W+Y +K K++V VFK +K +E + G+ +K +R+DNGGEY+ Sbjct: 497 LGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETGKKIKCLRTDNGGEYV 556 Query: 1400 EDPLKEFCEEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSNASLDKIWWAEAVNT 1579 + FC+++GIVR FTV TPQQNGVAERMNRTLLER R ML A + K +WAEAV T Sbjct: 557 DGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKT 616 Query: 1580 ACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHVKED---KLGVRAKKAIF 1750 ACY++NRSPSTAI K+PME+W G V+YS+L VFGCP Y KL +++K IF Sbjct: 617 ACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIF 676 Query: 1751 LGYPLGVKGYRLWCPELNKFIISRDVTFNERAMLDSKKSTDWDSQIXXXXXXXXXXXXMQ 1930 LGY VKGYRLW P K ++SRDV F E L SK+ D S+ +Q Sbjct: 677 LGYADNVKGYRLWDPTARKVVVSRDVVFAENE-LQSKQKNDSTSK---------ETAIVQ 726 Query: 1931 VEQRVPSSSTIXXXXXXXXXXXXXXXXXXXXSTQQQIENIPSLTSQRERRPPTRYGFDEY 2110 +E++ S + ST+Q + PS S Y + Sbjct: 727 MEEKSKESDSSEAEPVHEEQEPDDVNNGVRRSTRQTQK--PSWQSD--------YVMTSH 776 Query: 2111 ASYALSVFEDEPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKW 2290 +Y L E EP TF EA++ + A +W TAM EEM++LH+N TWELV+LPKGRK IG KW Sbjct: 777 DAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKW 836 Query: 2291 VYTVK-DGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQ 2467 VY +K DG + RY+ARLV KGYAQ+EG+D+NE+FSPVV+ T+IRV+LA A Sbjct: 837 VYKIKRDGNDQVE------RYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAA 890 Query: 2468 FDLELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKR 2647 DL LEQLDVKTAFLHG LEE+IYM QP G++ GKE+ VCRL KSLYGLKQ+PR WYKR Sbjct: 891 LDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKR 950 Query: 2648 FDTFMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEF 2827 FD+F++ Y+R D C Y+K+F G F+ LLLYVDDML+ +K + LK QL+ EF Sbjct: 951 FDSFIISLDYSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREF 1010 Query: 2828 EMKDLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSK 3007 +MKDLGPA KILGM+I RDR K+ L+QK+YL KVLRRF M + K IS P+P KLS Sbjct: 1011 DMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSS 1070 Query: 3008 QLCPTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKG 3187 + P+ E MS+VPYA+AVGSLMYAM+CTRPD AQAVG+VSR+MA+PG+ HW AVK Sbjct: 1071 GMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKR 1130 Query: 3188 ILRYLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQ 3367 I+RY+ GT + + F + L V G+VDSD+AGD DK +ST+GY FTL+G +SW S LQ Sbjct: 1131 IMRYIKGTSGVAVCFGGSE-LTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQ 1189 Query: 3368 PIVALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHAR 3547 +VALSTTEAEY+A T+A KEA+W++ L+++LG Q + V CDSQSA+H+A+N +H+R Sbjct: 1190 TVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSR 1249 Query: 3548 TKHIDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSL 3697 TKHI ++YH VREVV+ G V + K+ T DN AD +TK + KF C SL Sbjct: 1250 TKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADAMTKSINTDKFIWCRSL 1299 Score = 77.0 bits (188), Expect = 5e-11 Identities = 41/114 (35%), Positives = 67/114 (58%) Frame = +3 Query: 4398 FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 4577 F+I KFNG+N F+ W+ ++ IL + AI +PA D TDEKW ++D A + + Sbjct: 5 FEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGRPA----DITDEKWKEMDDNAVANLH 59 Query: 4578 LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSM 4739 L ++ + + + + +AK +W+ L KLY K L + ++LKRRL+ RM S+ Sbjct: 60 LAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSV 113 >gb|ACL97383.1| Gag-Pol polyprotein [Medicago truncatula] Length = 1305 Score = 1090 bits (2820), Expect = 0.0 Identities = 586/1249 (46%), Positives = 789/1249 (63%), Gaps = 18/1249 (1%) Frame = +2 Query: 2 LTSELYLKRRLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSLPPSY 181 L + ++LKRRL+ RM S+ DHIN N + S L+ I++ +++ +LL SLP SY Sbjct: 92 LHNRIFLKRRLYTLRMGESTSVTDHINTLNTLFSQLTASDFKIAENERAELLLQSLPDSY 151 Query: 182 DAFVDYLLSGKTDEGEDKDKLVFDDVVSAL---QAKALRKQEFSDEAQ-------VEGLF 331 D + + + D L FDDV A+ +++ K+E S+ ++ G Sbjct: 152 DQLIINITNNNIT-----DTLHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRS 206 Query: 332 VDXXXXXXXXXXXXXXXXXXDIECYYCRKPGHIRADCLKLKARDEKR-EKSDSKNVVASV 508 + +I+CY C GH++ +C +K EK E S S+ VAS Sbjct: 207 TERGPSGSQNHGRSKSRRKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVAST 266 Query: 509 AEGSEALEDPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVM 688 ++ E L + E + + LND W++DSGA++HM P +D F +Y ++ G+V Sbjct: 267 SDDGEIL------YSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFFSYEPISEGSVY 320 Query: 689 MGNSNACKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFL 865 MGN +A + GVGT++++ H G + + VRHV L+K+L+S+G L+ LG K E G L Sbjct: 321 MGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGIL 380 Query: 866 KVFYNGSLKMTGER-HGNLYFLRGDIVC-GGAMVSQSIDEKQVESTRLWHMRLGHMSEKG 1039 KV + M E+ NLY L GD + A V+ S E E+T +WH RLGHMSE+G Sbjct: 381 KVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAASSQE---ETTMMWHQRLGHMSERG 437 Query: 1040 MSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVS 1219 + VL+ + LL G K L FCEHC+ KQ R F ++ +LD IHSDVW S +S Sbjct: 438 LKVLAERNLLHGLKAVNLPFCEHCVISKQHRLKFARVTTRSKHILDLIHSDVW-ESPEIS 496 Query: 1220 KGGARWFVTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYI 1399 GGAR+FV+FIDD+SRR+W+Y +K K++V VFK +K +E + + +K +R+DNGGEYI Sbjct: 497 LGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETRKKIKCLRTDNGGEYI 556 Query: 1400 EDPLKEFCEEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSNASLDKIWWAEAVNT 1579 + FC+++GIVR FTV TPQQNGVAERMNRTLLER R ML A + K +WAEAV T Sbjct: 557 DGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAVKT 616 Query: 1580 ACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHVKED---KLGVRAKKAIF 1750 ACY++NRSPSTAI K+PME+W G V+YS+L VFGCP Y KL +++K IF Sbjct: 617 ACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQERTKLDPKSRKCIF 676 Query: 1751 LGYPLGVKGYRLWCPELNKFIISRDVTFNERAMLDSKKSTDWDSQIXXXXXXXXXXXXMQ 1930 LGY VKGYRLW P K ++SRDV F E + +K+ + +Q Sbjct: 677 LGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQKNDSTSKETAI----------VQ 726 Query: 1931 VEQRVPSSSTIXXXXXXXXXXXXXXXXXXXXSTQQQIENIPSLTSQRERRPPTRYGFDEY 2110 +E++ S + ST+Q + PS S Y + Sbjct: 727 MEEKSKESDSSEAESVHEEQEPDDVNDGVRRSTRQTQK--PSWQSD--------YVMTSH 776 Query: 2111 ASYALSVFEDEPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKW 2290 +Y L E EP TF EA++ + A +W TAM EEM++LH+N TWELV+LPKGRK IG KW Sbjct: 777 DAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKW 836 Query: 2291 VYTVK-DGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQ 2467 VY +K DG + RY+ARLV KGYAQ+EG+D+NE+FSPVV+ T+IRV+LA A Sbjct: 837 VYKIKRDGNDQVE------RYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAA 890 Query: 2468 FDLELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKR 2647 DL LEQLDVKTAFLHG LEE+IYM QP G++ GKE+ VCRL KSLYGLKQ+PR WYKR Sbjct: 891 LDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKR 950 Query: 2648 FDTFMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEF 2827 FD+F++ Y+R D C Y+K+F G F+ LLLYVDDML+ +K + LK QL+ EF Sbjct: 951 FDSFIISLDYSRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREF 1010 Query: 2828 EMKDLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSK 3007 +MKDLGPA KILGM+I RDR K+ L+QK+YL KVLRRF M + K IS P+P KLS Sbjct: 1011 DMKDLGPANKILGMQIHRDRKDMKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSS 1070 Query: 3008 QLCPTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKG 3187 + P+ E MS+VPYA+AVGSLMYAM+CTRPD AQAVG+VSR+MA+PG+ HW AVK Sbjct: 1071 GMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKR 1130 Query: 3188 ILRYLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQ 3367 I+RY+ GT + + F + L V G+VDSD+AGD DK +ST+GY FTL+G +SW S LQ Sbjct: 1131 IMRYIKGTSGVAVCFGGSE-LTVRGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQ 1189 Query: 3368 PIVALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHAR 3547 +VALSTTEAEY+A T+A KEA+W++ L+++LG Q + V CDSQSA+H+A+N +H+R Sbjct: 1190 TVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSR 1249 Query: 3548 TKHIDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLS 3694 TKHI ++YH VREVV+ G V + K+ T DN AD++TK + KF C S Sbjct: 1250 TKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINADKFVWCRS 1298 Score = 77.0 bits (188), Expect = 5e-11 Identities = 41/114 (35%), Positives = 67/114 (58%) Frame = +3 Query: 4398 FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 4577 F+I KFNG+N F+ W+ ++ IL + AI +PA D TDEKW ++D A + + Sbjct: 5 FEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGRPA----DITDEKWKEMDDNAVANLH 59 Query: 4578 LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSM 4739 L ++ + + + + +AK +W+ L KLY K L + ++LKRRL+ RM S+ Sbjct: 60 LAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLRMGESTSV 113 >gb|ACL97386.1| Gag-Pol polyprotein [Medicago truncatula] Length = 1305 Score = 1086 bits (2809), Expect = 0.0 Identities = 583/1249 (46%), Positives = 788/1249 (63%), Gaps = 18/1249 (1%) Frame = +2 Query: 2 LTSELYLKRRLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSLPPSY 181 L + ++LKRRL+ +M S+ DHIN N + S L+ I+ +++ +LL SLP SY Sbjct: 92 LHNRIFLKRRLYTLQMGESTSVTDHINTLNTLFSQLTASDFKIAKNERAELLLQSLPDSY 151 Query: 182 DAFVDYLLSGKTDEGEDKDKLVFDDVVSAL---QAKALRKQEFSDEAQ-------VEGLF 331 D + + + D L FDDV A+ +++ K+E S+ ++ G Sbjct: 152 DQLIINITNNNI-----ADTLHFDDVAGAILEEESRRKNKEERSESSKQAEALTMTRGRS 206 Query: 332 VDXXXXXXXXXXXXXXXXXXDIECYYCRKPGHIRADCLKLKARDEKR-EKSDSKNVVASV 508 + +I+CY C GH++ +C +K EK E S S+ VAS Sbjct: 207 TERGPSGSQNHGRSKSRRKKNIKCYGCGMKGHVKKECWNIKKNGEKNSEASTSQGCVAST 266 Query: 509 AEGSEALEDPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKDCFTTYREVNGGTVM 688 ++ E L + E + + LND W++DSGA++HM P +D F +Y ++ G+V Sbjct: 267 SDDGEIL------YSEAATSSKGERRLNDVWIMDSGATWHMTPHRDWFYSYEPISEGSVY 320 Query: 689 MGNSNACKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKYAAEYGFL 865 MGN +A + GVGT++++ H G + + VRHV L+K+L+S+G L+ LG K E G L Sbjct: 321 MGNDHALEIAGVGTIRLKMHDGTVRKIQGVRHVKGLKKNLLSVGQLDDLGCKIHTESGIL 380 Query: 866 KVFYNGSLKMTGER-HGNLYFLRGDIVC-GGAMVSQSIDEKQVESTRLWHMRLGHMSEKG 1039 KV + M E+ NLY L GD + A V+ + E E+T +WH RLGHMSE+G Sbjct: 381 KVVKGNLVVMKAEKITSNLYMLLGDTLQEADASVAAASQE---ETTMMWHQRLGHMSERG 437 Query: 1040 MSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSRTVS 1219 + VL + LL G KT L FCEHC+ KQ R F ++ +LD IHSDVW S +S Sbjct: 438 LKVLVERNLLHGLKTVNLPFCEHCVMSKQHRLKFARVTTRSKHILDLIHSDVW-ESPEIS 496 Query: 1220 KGGARWFVTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGGEYI 1399 GGAR+FV+FIDD+SRR+W+Y +K K++V VFK +K +E + + +K +R+DNGGEY+ Sbjct: 497 LGGARYFVSFIDDYSRRLWVYPIKKKSDVFPVFKAFKAQIELETEKKIKCLRTDNGGEYV 556 Query: 1400 EDPLKEFCEEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSNASLDKIWWAEAVNT 1579 + FC+++GIVR FTV TPQQNGVAERMNRTLLER R ML A + K +WAEA T Sbjct: 557 DGEFLAFCKQEGIVRQFTVAHTPQQNGVAERMNRTLLERTRAMLKTAGMAKSFWAEAAKT 616 Query: 1580 ACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHV---KEDKLGVRAKKAIF 1750 ACY++NRSPSTAI K+PME+W G V+YS+L VFGCP Y ++ KL +++K IF Sbjct: 617 ACYVINRSPSTAIDLKTPMEMWKGKPVDYSSLHVFGCPVYVMYNSQEKTKLDPKSRKCIF 676 Query: 1751 LGYPLGVKGYRLWCPELNKFIISRDVTFNERAMLDSKKSTDWDSQIXXXXXXXXXXXXMQ 1930 LGY VKGYRLW P K ++SRDV F E + +K+ + +Q Sbjct: 677 LGYADNVKGYRLWDPTARKVVVSRDVVFAENELQSEQKNDSTSKETAI----------VQ 726 Query: 1931 VEQRVPSSSTIXXXXXXXXXXXXXXXXXXXXSTQQQIENIPSLTSQRERRPPTRYGFDEY 2110 +E++ S + ST+Q + PS S Y + Sbjct: 727 MEEKSKESDSSEAESVHEEQEPDDVNDGVRRSTRQTQK--PSWQSD--------YVMTSH 776 Query: 2111 ASYALSVFEDEPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGRKKIGCKW 2290 +Y L E EP TF EA++ + A +W TAM EEM++LH+N TWELV+LPKGRK IG KW Sbjct: 777 DAYCLITEEGEPSTFHEALNGSDASQWMTAMHEEMEALHRNKTWELVELPKGRKAIGNKW 836 Query: 2291 VYTVK-DGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVLLAFVAQ 2467 VY +K DG + RY+ARLV KGYAQ+EG+D+NE+FSPVV+ T+IRV+LA A Sbjct: 837 VYKIKRDGNDQVE------RYRARLVVKGYAQKEGIDFNEIFSPVVRLTTIRVVLAMCAA 890 Query: 2468 FDLELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSPRQWYKR 2647 DL LEQLDVKTAFLHG LEE+IYM QP G++ GKE+ VCRL KSLYGLKQ+PR WYKR Sbjct: 891 LDLHLEQLDVKTAFLHGELEEEIYMLQPEGFKEQGKENLVCRLTKSLYGLKQAPRCWYKR 950 Query: 2648 FDTFMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKKQLSLEF 2827 FD+F++ Y R D C Y+K+F G F+ LLLYVDDML+ +K + LK QL+ EF Sbjct: 951 FDSFIISLDYNRLSSDHCTYYKRFDGNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREF 1010 Query: 2828 EMKDLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPSTVKLSK 3007 +MKDLGPA KILGM+I RDR K+ L+QK+YL KVLRRF M + K IS P+P KLS Sbjct: 1011 DMKDLGPANKILGMQIHRDRKDRKIWLSQKNYLRKVLRRFNMQDCKPISTPLPVNFKLSS 1070 Query: 3008 QLCPTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAHWYAVKG 3187 + P+ E MS+VPYA+AVGSLMYAM+CTRPD AQAVG+VSR+MA+PG+ HW AVK Sbjct: 1071 GMSPSNEAERMEMSRVPYASAVGSLMYAMICTRPDIAQAVGVVSRFMADPGKEHWNAVKR 1130 Query: 3188 ILRYLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPISWRSMLQ 3367 I+RY+ GT + + F + L V G+VDSD+AGD DK +ST+GY FTL+G +SW S LQ Sbjct: 1131 IMRYIKGTSGVAVCFGGSE-LTVWGYVDSDFAGDHDKRKSTTGYVFTLAGGAVSWLSKLQ 1189 Query: 3368 PIVALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKNQVYHAR 3547 +VALSTTEAEY+A T+A KEA+W++ L+++LG Q + V CDSQSA+H+A+N +H+R Sbjct: 1190 TVVALSTTEAEYMAATQACKEAIWMQRLMEELGHKQEQITVYCDSQSALHIARNPAFHSR 1249 Query: 3548 TKHIDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLS 3694 TKHI ++YH VREVV+ G V + K+ T DN AD++TK + KF C S Sbjct: 1250 TKHIGVQYHFVREVVEEGSVDMQKIHTNDNLADVMTKPINTDKFVWCRS 1298 Score = 71.6 bits (174), Expect = 2e-09 Identities = 39/114 (34%), Positives = 66/114 (57%) Frame = +3 Query: 4398 FDIIKFNGKNNFTSWQTDVKDILVSMKQIKAIKAKPATLPKDWTDEKWADLDLMACSTIR 4577 F+I KFNG+N F+ W+ ++ IL + AI + A D TDEKW ++D A + + Sbjct: 5 FEIEKFNGRN-FSLWKLKIRAILRKDNCLDAIDGRLA----DITDEKWKEMDDNAVANLH 59 Query: 4578 LCLSRDITHNFSSETSAKVLWEKLEKLYLQKDLTSELYLKRRLHAFRMSPGKSM 4739 L ++ + + + + +AK +W+ L KLY K L + ++LKRRL+ +M S+ Sbjct: 60 LAMADSVLSSIAEKKTAKEIWDTLIKLYEVKSLHNRIFLKRRLYTLQMGESTSV 113 >gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa Japonica Group] Length = 1312 Score = 1083 bits (2802), Expect = 0.0 Identities = 598/1257 (47%), Positives = 775/1257 (61%), Gaps = 24/1257 (1%) Frame = +2 Query: 2 LTSELYLKRRLHAFRMSPGKSMMDHINEFNKICSDLSNISVTISDTDKSMILLCSLPPSY 181 LTS+++LK++L ++ S+MDH++ F +I +DL +I V + D +ILLCSLP SY Sbjct: 131 LTSKMHLKQKLFLHKLQDDGSVMDHLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSY 190 Query: 182 DAFVDYLLSGKTDEGEDKDKLVFDDVVSALQAKALRKQEFSDE---AQVEGLFVDXXXXX 352 F D +L D L+ +V AL AK K+ E +Q EGL V Sbjct: 191 ANFRDTILYSH-------DTLILKEVYDALHAKEKMKKMVPSEGSNSQAEGLVVRGRQQE 243 Query: 353 XXXXXXXXXXXXXDIE-----------CYYCRKPGHIRADCLKLKARDEKREKSDSKNVV 499 C YC++ GH ++C KL+ +D++ K K Sbjct: 244 KNTKNQSRDKSSSSYRGRSKSRGRYKSCKYCKRDGHDISECWKLQDKDKRTGKYIPKG-- 301 Query: 500 ASVAEGSEALEDPMCGFDEEVLTVTSKSYLNDGWMLDSGASYHMCPSKDCFTTYREVNGG 679 EG A+ E ++ + +D W+LD+ +YHMCP++D F TY + GG Sbjct: 302 KKEEEGKAAVVTDEKSDTELLVAYAGCAQTSDQWILDTAWTYHMCPNRDWFATYEALQGG 361 Query: 680 TVMMGNSNACKTVGVGTVQVRSH-GVITTLSEVRHVPDLRKSLISLGVLESLGYKYAAEY 856 TV+MG+ C+ G+GTVQ++ G I TLS+VRH+P+L++SLISL L+ GYKY+ Sbjct: 362 TVLMGDDTPCEVAGIGTVQIKMFDGYIRTLSDVRHIPNLKRSLISLCTLDRKGYKYSGGD 421 Query: 857 GFLKVFYNGSLKMTGE-RHGNLYFLRGDIVCGG-AMVSQSIDEKQVESTRLWHMRLGHMS 1030 G LKV + M + + NLY LRG + G A VS S+ ++T LWHMRLGHMS Sbjct: 422 GILKVTKGSLVVMKADIKSANLYHLRGTTILGNVAAVSDSLSNS--DATNLWHMRLGHMS 479 Query: 1031 EKGMSVLSSKGLLGGEKTCKLDFCEHCIFGKQCRSSFGTAVHHTQGMLDYIHSDVWGPSR 1210 E G++ LS + LL G+ KL FCEHCIFGK R F T+ H T+G+LDY+HSD+WGP+ Sbjct: 480 EIGLAELSKRELLDGQSIGKLKFCEHCIFGKHKRVKFNTSTHTTEGILDYVHSDLWGPAC 539 Query: 1211 TVSKGGARWFVTFIDDFSRRVWLYTMKHKNEVTEVFKKWKTMVEKQLGRVVKKIRSDNGG 1390 S GGAR+ +T +DD+SR+VW Y +KHK + +VFK+WKTMVE+Q + VK +R+DNG Sbjct: 540 KTSFGGARYMMTIVDDYSRKVWPYFLKHKYQAFDVFKEWKTMVERQTEKKVKILRTDNGM 599 Query: 1391 EYIEDPLKEFCEEQGIVRHFTVKGTPQQNGVAERMNRTLLERARCMLSNASLDKIWWAEA 1570 E+ K +C+ +GIV H+TV TPQQNGVAERMN ++ +ARCMLSNA L K +WAEA Sbjct: 600 EFCSKIFKSYCKSEGIVHHYTVPHTPQQNGVAERMNMAIISKARCMLSNADLPKQFWAEA 659 Query: 1571 VNTACYLVNRSPSTAIKCKSPMEVWTGNLVNYSNLRVFGCPAYFHVKEDKLGVRAKKAIF 1750 V+T CYL+NRSPS A K+P+EVW+G+ NYS+LRVFGC AY HV KL RA K IF Sbjct: 660 VSTTCYLINRSPSYATDKKTPIEVWSGSPANYSDLRVFGCTAYAHVDNGKLEPRAIKCIF 719 Query: 1751 LGYPLGVKGYRLWCPELNKFIISRDVTFNERAMLDSKKSTDWDSQIXXXXXXXXXXXXMQ 1930 LGYP GVKGY+LWCPE K +ISR+V F+E +L K ST+ +Q Sbjct: 720 LGYPSGVKGYKLWCPETKKVVISRNVVFHESVILHDKPSTN-------VPVESQEKASVQ 772 Query: 1931 VEQRVPSSSTIXXXXXXXXXXXXXXXXXXXXSTQQQIE-NIPSLTSQRERRPPTRYGFD- 2104 VE + S QQ + +I +R +PP RY + Sbjct: 773 VEHLISSGHAPEKENVAINQDAPVIEDSDSSIVQQSSKRSIAKDKPKRNIKPPRRYIEEA 832 Query: 2105 EYASYALSVFED-----EPFTFEEAMSTTHAIEWKTAMDEEMKSLHKNHTWELVKLPKGR 2269 +YALSV E+ EP T+ EA+ + W TAM +EM+SL KNHTWE VKLPK + Sbjct: 833 NIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEK 892 Query: 2270 KKIGCKWVYTVKDGIPDSKGIVSGVRYKARLVAKGYAQREGVDYNEVFSPVVKHTSIRVL 2449 K I CKW++ K+G+ S RYKARLVAKGY+Q G+D+N+VFSP++KH+SIR L Sbjct: 893 KPIRCKWIFKRKEGMSPS----DEARYKARLVAKGYSQIPGIDFNDVFSPIMKHSSIRTL 948 Query: 2450 LAFVAQFDLELEQLDVKTAFLHGNLEEDIYMSQPIGYEVAGKEDYVCRLQKSLYGLKQSP 2629 L VA D ELEQ+DVKTAFLHG LEEDIYM QP G+ V GKE+ VCRL+KSLYGLKQSP Sbjct: 949 LGIVAMHDYELEQMDVKTAFLHGELEEDIYMEQPEGFVVLGKENLVCRLKKSLYGLKQSP 1008 Query: 2630 RQWYKRFDTFMLQQKYTRSKYDQCVYFKKFPGGSFVYLLLYVDDMLIAAKSKSEIDVLKK 2809 RQWYKRFD+FML QK+ RS YD CVY K GS +YLLLYVDDMLIAAK KSEI LK Sbjct: 1009 RQWYKRFDSFMLSQKFRRSNYDSCVYL-KVVDGSAIYLLLYVDDMLIAAKDKSEIAKLKA 1067 Query: 2810 QLSLEFEMKDLGPAKKILGMEITRDRSKGKLCLTQKSYLEKVLRRFGMHNSKAISVPIPS 2989 QLS EF MKDLG AKKILGMEITR+R GKL L+QK Y++KVLRRF MH+ K I Sbjct: 1068 QLSSEFGMKDLGAAKKILGMEITRERHSGKLYLSQKGYIKKVLRRFNMHDVKPIIF---- 1123 Query: 2990 TVKLSKQLCPTTTEEMEFMSKVPYANAVGSLMYAMVCTRPDTAQAVGLVSRYMANPGRAH 3169 +LCP + ++E+MS+VPY++AVGSLMYAM D G V Sbjct: 1124 ------RLCPQSDYDIEYMSRVPYSSAVGSLMYAMFGRSRD-----GFV----------- 1161 Query: 3170 WYAVKGILRYLNGTLDIGLVFEKEQSLKVCGFVDSDYAGDRDKCRSTSGYCFTLSGAPIS 3349 G+VDSD+AGD D+ RS +GY FT+ G +S Sbjct: 1162 ------------------------------GYVDSDFAGDLDRRRSLTGYVFTIGGCDVS 1191 Query: 3350 WRSMLQPIVALSTTEAEYIAVTEAVKEALWLRGLVKDLGMIQRSVVVNCDSQSAIHLAKN 3529 W++ LQ VALSTTEAEY+A++EA KEA+WLRGL +L + + + CDSQSAI L K+ Sbjct: 1192 WKASLQATVALSTTEAEYMAISEACKEAIWLRGLYTELCGVTSCINIFCDSQSAICLTKD 1251 Query: 3530 QVYHARTKHIDIRYHKVREVVDNGLVQLLKVDTEDNPADMLTKVVPKVKFERCLSLI 3700 Q++H RTKHID+RYH +R V+ G V++ K+ T DNPADM+TK V KFE C SL+ Sbjct: 1252 QMFHERTKHIDVRYHIIRGVIVEGDVKVCKISTHDNPADMMTKPVSATKFELCSSLV 1308