BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver23_contig00005399
         (993 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II su...   248   2e-63
emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]   248   2e-63
ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, puta...   247   4e-63
ref|XP_002313865.1| predicted protein [Populus trichocarpa] gi|2...   246   6e-63
ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [...   245   1e-62

>ref|XP_002285322.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB3-A [Vitis
           vinifera]
          Length = 318

 Score =  248 bits (633), Expect = 2e-63
 Identities = 119/158 (75%), Positives = 142/158 (89%)
 Frame = +3

Query: 519 MEGMSYQRFPKIKIREMKDEYLKFELRETDVSMANALRRIMIAEVPTIAIELVEIEVNST 698
           MEG+SYQRFPKIKIRE+KD+Y KFELRETD SMANALRR+MIAEVPT+AI+LVEIEVNS+
Sbjct: 1   MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 699 VLNDEFLAHRLGLIPLTSDKAMGMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTLDV 878
           VLNDEF+AHRLGLIPLTS++AM MRFSRDCDACDGDGQCE+CSVEFHL  +C  D+TLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 879 TSADLLTADPNVIPVDVANAARSTSFDSSENKGIIIVK 992
           TS DL+++D  V+PVD ++   S+ +DS++ KGIIIVK
Sbjct: 121 TSKDLISSDHTVVPVDFSD---SSGYDSADKKGIIIVK 155


>emb|CAN60923.1| hypothetical protein VITISV_019338 [Vitis vinifera]
          Length = 318

 Score =  248 bits (633), Expect = 2e-63
 Identities = 119/158 (75%), Positives = 142/158 (89%)
 Frame = +3

Query: 519 MEGMSYQRFPKIKIREMKDEYLKFELRETDVSMANALRRIMIAEVPTIAIELVEIEVNST 698
           MEG+SYQRFPKIKIRE+KD+Y KFELRETD SMANALRR+MIAEVPT+AI+LVEIEVNS+
Sbjct: 1   MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 699 VLNDEFLAHRLGLIPLTSDKAMGMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTLDV 878
           VLNDEF+AHRLGLIPLTS++AM MRFSRDCDACDGDGQCE+CSVEFHL  +C  D+TLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120

Query: 879 TSADLLTADPNVIPVDVANAARSTSFDSSENKGIIIVK 992
           TS DL+++D  V+PVD ++   S+ +DS++ KGIIIVK
Sbjct: 121 TSKDLISSDHTVVPVDFSD---SSGYDSADKKGIIIVK 155


>ref|XP_002518700.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
           gi|223542081|gb|EEF43625.1| DNA-directed RNA polymerase
           II subunit, putative [Ricinus communis]
          Length = 318

 Score =  247 bits (630), Expect = 4e-63
 Identities = 119/158 (75%), Positives = 140/158 (88%)
 Frame = +3

Query: 519 MEGMSYQRFPKIKIREMKDEYLKFELRETDVSMANALRRIMIAEVPTIAIELVEIEVNST 698
           MEG SYQRFP+IKIRE+KD+Y KFELR+TD SMANALRR+MIAEVPT+AI+LVEIEVNS+
Sbjct: 1   MEGASYQRFPRIKIRELKDDYCKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60

Query: 699 VLNDEFLAHRLGLIPLTSDKAMGMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTLDV 878
           VLNDEF+AHRLGLIPLTS++AM MRFSRDCDACDGDGQC+YCSVEFHL  +C  DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCDYCSVEFHLRAKCITDQTLDV 120

Query: 879 TSADLLTADPNVIPVDVANAARSTSFDSSENKGIIIVK 992
           TS DL ++D  V+PVD ++   S+ +DSSE +GIIIVK
Sbjct: 121 TSKDLYSSDHTVVPVDFSD---SSGYDSSEQRGIIIVK 155


>ref|XP_002313865.1| predicted protein [Populus trichocarpa] gi|222850273|gb|EEE87820.1|
           predicted protein [Populus trichocarpa]
          Length = 346

 Score =  246 bits (628), Expect = 6e-63
 Identities = 124/160 (77%), Positives = 141/160 (88%), Gaps = 2/160 (1%)
 Frame = +3

Query: 519 MEGMSYQRFPKIKIREMKDEYLKFELRETDVSMANALRRIMIAEVPTIAIELVEIEVNST 698
           ME +SYQRFPKIKIREMKD+YLKFELRETD SMANALRR+MIAEVPTIAI+LVEIEVNS+
Sbjct: 1   MESVSYQRFPKIKIREMKDDYLKFELRETDASMANALRRVMIAEVPTIAIDLVEIEVNSS 60

Query: 699 VLNDEFLAHRLGLIPLTSDKAMGMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTLDV 878
           VLNDEF+AHRLGLIPLTS++AMGMRFSRDCDACDGDGQCEYCSVEFHL  +C  DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMGMRFSRDCDACDGDGQCEYCSVEFHLRAKCITDQTLDV 120

Query: 879 TSADLLTADPNVIPVDVANAARSTS-FDSSE-NKGIIIVK 992
           TS DL ++D  VIPVD ++ + +   FD +E  +GIIIVK
Sbjct: 121 TSKDLYSSDHAVIPVDFSDPSDANDPFDHTETQRGIIIVK 160


>ref|NP_179145.1| DNA-directed RNA polymerase II subunit RPB3-A [Arabidopsis
           thaliana] gi|11134646|sp|Q39211.1|RPB3A_ARATH RecName:
           Full=DNA-directed RNA polymerase II subunit RPB3-A;
           Short=RNA polymerase II subunit 3-A; Short=RNA
           polymerase II subunit B3-A; AltName: Full=DNA-directed
           RNA polymerase II 36 kDa polypeptide A
           gi|514318|gb|AAB03741.1| RNA polymerase II third largest
           subunit [Arabidopsis thaliana] gi|4544370|gb|AAD22281.1|
           DNA-directed RNA polymerase II, third largest subunit
           [Arabidopsis thaliana] gi|17381018|gb|AAL36321.1|
           putative DNA-directed RNA polymerase II third largest
           subunit [Arabidopsis thaliana]
           gi|20465883|gb|AAM20046.1| putative DNA-directed RNA
           polymerase II [Arabidopsis thaliana]
           gi|330251306|gb|AEC06400.1| DNA-directed RNA polymerase
           II subunit RPB3-A [Arabidopsis thaliana]
          Length = 319

 Score =  245 bits (626), Expect = 1e-62
 Identities = 122/158 (77%), Positives = 139/158 (87%)
 Frame = +3

Query: 519 MEGMSYQRFPKIKIREMKDEYLKFELRETDVSMANALRRIMIAEVPTIAIELVEIEVNST 698
           M+G +YQRFPKIKIRE+KD+Y KFELRETDVSMANALRR+MI+EVPT+AI+LVEIEVNS+
Sbjct: 1   MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60

Query: 699 VLNDEFLAHRLGLIPLTSDKAMGMRFSRDCDACDGDGQCEYCSVEFHLSVRCDQDQTLDV 878
           VLNDEF+AHRLGLIPLTS++AM MRFSRDCDACDGDGQCE+CSVEF LS +C  DQTLDV
Sbjct: 61  VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120

Query: 879 TSADLLTADPNVIPVDVANAARSTSFDSSENKGIIIVK 992
           TS DL +ADP V PVD      S+  DSSE+KGIIIVK
Sbjct: 121 TSRDLYSADPTVTPVDF--TIDSSVSDSSEHKGIIIVK 156