BLASTX nr result

ID: Papaver22_contig00032493 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver22_contig00032493
         (413 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283991.1| PREDICTED: uncharacterized protein LOC100264...    66   2e-16
ref|XP_004138044.1| PREDICTED: mediator of RNA polymerase II tra...    57   6e-12
ref|XP_002511168.1| conserved hypothetical protein [Ricinus comm...    61   4e-10
ref|NP_568973.1| uncharacterized protein [Arabidopsis thaliana] ...    59   7e-10
ref|XP_002864848.1| hypothetical protein ARALYDRAFT_496535 [Arab...    59   2e-09

>ref|XP_002283991.1| PREDICTED: uncharacterized protein LOC100264705 [Vitis vinifera]
           gi|147789866|emb|CAN73869.1| hypothetical protein
           VITISV_001275 [Vitis vinifera]
           gi|297734439|emb|CBI15686.3| unnamed protein product
           [Vitis vinifera]
          Length = 174

 Score = 66.2 bits (160), Expect(2) = 2e-16
 Identities = 30/35 (85%), Positives = 34/35 (97%)
 Frame = -3

Query: 300 LRKEVADKNKHLKLLIDQFRELITDISTWQSPCSL 196
           LRKE+ADKNK+LKLLIDQ R+LITDISTWQSPCS+
Sbjct: 140 LRKELADKNKYLKLLIDQLRDLITDISTWQSPCSV 174



 Score = 43.9 bits (102), Expect(2) = 2e-16
 Identities = 22/37 (59%), Positives = 28/37 (75%)
 Frame = -1

Query: 413 AIPSHPKAKAYESGNAVGGSESGADQAEIEKLQTKSS 303
           AI S  KAKA+E+ +A  GS S ADQAEIEKL+ ++S
Sbjct: 102 AIQSSQKAKAFEASSAASGSASQADQAEIEKLEERAS 138


>ref|XP_004138044.1| PREDICTED: mediator of RNA polymerase II transcription subunit
           30-like [Cucumis sativus]
           gi|449532651|ref|XP_004173294.1| PREDICTED: mediator of
           RNA polymerase II transcription subunit 30-like [Cucumis
           sativus]
          Length = 198

 Score = 57.4 bits (137), Expect(2) = 6e-12
 Identities = 24/35 (68%), Positives = 30/35 (85%)
 Frame = -3

Query: 300 LRKEVADKNKHLKLLIDQFRELITDISTWQSPCSL 196
           LRKE+  KN H+KLLIDQ R+L+ D+STWQSPCS+
Sbjct: 164 LRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV 198



 Score = 37.7 bits (86), Expect(2) = 6e-12
 Identities = 20/33 (60%), Positives = 25/33 (75%)
 Frame = -1

Query: 413 AIPSHPKAKAYESGNAVGGSESGADQAEIEKLQ 315
           AIP+  KAKAYESG +  G  S ADQ+EI+KL+
Sbjct: 128 AIPNSQKAKAYESGTS--GHASPADQSEIDKLE 158


>ref|XP_002511168.1| conserved hypothetical protein [Ricinus communis]
           gi|223550283|gb|EEF51770.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 196

 Score = 60.8 bits (146), Expect(2) = 4e-10
 Identities = 28/39 (71%), Positives = 33/39 (84%)
 Frame = -3

Query: 312 QVITLRKEVADKNKHLKLLIDQFRELITDISTWQSPCSL 196
           Q   LRKE+ +KN +LKLLIDQ R+LITDISTWQSPCS+
Sbjct: 158 QASNLRKELFNKNAYLKLLIDQLRDLITDISTWQSPCSV 196



 Score = 28.1 bits (61), Expect(2) = 4e-10
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = -1

Query: 413 AIPSHPKAKAYESGNAVGGSESGADQAEIEKLQTKSS 303
           AIP+  KA ++E+      S S AD+A++EKL+ ++S
Sbjct: 129 AIPNSHKAISFETS-----SSSPADEADVEKLEEQAS 160


>ref|NP_568973.1| uncharacterized protein [Arabidopsis thaliana]
           gi|75171739|sp|Q9FMV4.1|MED30_ARATH RecName:
           Full=Mediator of RNA polymerase II transcription subunit
           30 gi|9758289|dbj|BAB08813.1| unnamed protein product
           [Arabidopsis thaliana] gi|190886513|gb|ACE95179.1|
           At1g17730 [Arabidopsis thaliana]
           gi|332010374|gb|AED97757.1| uncharacterized protein
           [Arabidopsis thaliana]
          Length = 189

 Score = 58.5 bits (140), Expect(2) = 7e-10
 Identities = 26/39 (66%), Positives = 32/39 (82%)
 Frame = -3

Query: 312 QVITLRKEVADKNKHLKLLIDQFRELITDISTWQSPCSL 196
           Q ++LR E+A KN H+K LID+ RELI DISTWQSPCS+
Sbjct: 151 QALSLRMEIAKKNVHVKELIDKLRELIADISTWQSPCSV 189



 Score = 29.6 bits (65), Expect(2) = 7e-10
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = -1

Query: 413 AIPSHPKAKAYESGNAVGGSESGADQAEIEKLQTKS 306
           AIP+  KAKA E  N +G  ES   + EIEKL+ ++
Sbjct: 120 AIPNSQKAKASEMQNGLGSPES---EDEIEKLEEQA 152


>ref|XP_002864848.1| hypothetical protein ARALYDRAFT_496535 [Arabidopsis lyrata subsp.
           lyrata] gi|297310683|gb|EFH41107.1| hypothetical protein
           ARALYDRAFT_496535 [Arabidopsis lyrata subsp. lyrata]
          Length = 178

 Score = 58.5 bits (140), Expect(2) = 2e-09
 Identities = 26/39 (66%), Positives = 32/39 (82%)
 Frame = -3

Query: 312 QVITLRKEVADKNKHLKLLIDQFRELITDISTWQSPCSL 196
           Q ++LR E+A KN H+K LID+ RELI DISTWQSPCS+
Sbjct: 140 QALSLRMEIAKKNVHVKELIDKLRELIADISTWQSPCSV 178



 Score = 28.5 bits (62), Expect(2) = 2e-09
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -1

Query: 413 AIPSHPKAKAYESGNAVGGSESGADQAEIEKLQTKS 306
           AIP+  KAKA E  N  G  ES   + EIEKL+ ++
Sbjct: 109 AIPNSHKAKASEMENGFGSPES---EDEIEKLEEQA 141


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