BLASTX nr result
ID: Papaver22_contig00027730
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver22_contig00027730
(503 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003595992.1| U5 small nuclear ribonucleoprotein 200 kDa h... 82 2e-27
ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotei... 81 9e-27
ref|XP_003531516.1| PREDICTED: U5 small nuclear ribonucleoprotei... 81 1e-26
ref|XP_001757495.1| predicted protein [Physcomitrella patens sub... 82 2e-26
ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotei... 91 5e-25
>ref|XP_003595992.1| U5 small nuclear ribonucleoprotein 200 kDa helicase [Medicago
truncatula] gi|355485040|gb|AES66243.1| U5 small nuclear
ribonucleoprotein 200 kDa helicase [Medicago truncatula]
Length = 2223
Score = 81.6 bits (200), Expect(3) = 2e-27
Identities = 43/60 (71%), Positives = 48/60 (80%)
Frame = +2
Query: 323 IEISVMLNWAQPAFDRMI*LNRVQSKVYETALFTAEILLLCAPTWARKLNVAMLTILQQI 502
++IS M +WAQPAF M LNRVQSKVYETALF + LLLCAPT A K NVA+LTILQQI
Sbjct: 505 LKISAMPDWAQPAFKGMTQLNRVQSKVYETALFKPDNLLLCAPTGAGKTNVAVLTILQQI 564
Score = 45.8 bits (107), Expect(3) = 2e-27
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Frame = +3
Query: 3 RATAKERQKNEDKSNREEAR*LKEESTG-----RFKDTDRLSSSPVIGKDSVSAWLVGR 164
RA+AKERQKN +KS REEAR LK+++ G R +D DR+ +D S WL G+
Sbjct: 391 RASAKERQKNLEKSIREEARRLKDDTVGDGDKERDRDRDRIRRG-AGDRDGESGWLKGQ 448
Score = 40.0 bits (92), Expect(3) = 2e-27
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 151 GWLGGQCQFLDLETISFRQGGLTNEVSAC--CQALLESLQR-IQEVHMPVPRPKALAPGK 321
GWL GQ Q LDL+ ++F QGGL C L++ +E+H+P + K L P +
Sbjct: 443 GWLKGQRQMLDLDNLTFEQGGLFMAKKKCDLPDGSYRHLEKGYEEIHVPALKAKPLDPNE 502
>ref|XP_003546783.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
[Glycine max]
Length = 2183
Score = 81.3 bits (199), Expect(3) = 9e-27
Identities = 43/60 (71%), Positives = 48/60 (80%)
Frame = +2
Query: 323 IEISVMLNWAQPAFDRMI*LNRVQSKVYETALFTAEILLLCAPTWARKLNVAMLTILQQI 502
++IS M +WAQPAF M LNRVQSKVYETALF + LLLCAPT A K NVA+LTILQQI
Sbjct: 497 VKISSMPDWAQPAFKGMTQLNRVQSKVYETALFQPDNLLLCAPTGAGKTNVAVLTILQQI 556
Score = 45.4 bits (106), Expect(3) = 9e-27
Identities = 27/55 (49%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = +3
Query: 3 RATAKERQKNEDKSNREEAR*LKEESTGRFKDTDRLSSSPVIG-KDSVSAWLVGR 164
RA+AKERQKN +KS REEAR LK+++ G R S V+ +D S WL G+
Sbjct: 386 RASAKERQKNLEKSIREEARRLKDDTGGDGDKESRDRSRRVVADRDGESGWLKGQ 440
Score = 38.5 bits (88), Expect(3) = 9e-27
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 151 GWLGGQCQFLDLETISFRQGGLTNEVSAC---CQALLESLQRIQEVHMPVPRPKALAPGK 321
GWL GQ Q LDL++I+F QGG C + + +E+H+P + K L P +
Sbjct: 435 GWLKGQRQMLDLDSIAFAQGGFFMAKKKCDLPDGSYRHLSKGYEEIHVPALKAKPLDPNE 494
>ref|XP_003531516.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase-like
[Glycine max]
Length = 2183
Score = 81.3 bits (199), Expect(3) = 1e-26
Identities = 43/60 (71%), Positives = 48/60 (80%)
Frame = +2
Query: 323 IEISVMLNWAQPAFDRMI*LNRVQSKVYETALFTAEILLLCAPTWARKLNVAMLTILQQI 502
++IS M +WAQPAF M LNRVQSKVYETALF + LLLCAPT A K NVA+LTILQQI
Sbjct: 497 VKISSMPDWAQPAFKGMTQLNRVQSKVYETALFKPDNLLLCAPTGAGKTNVAVLTILQQI 556
Score = 45.1 bits (105), Expect(3) = 1e-26
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Frame = +3
Query: 3 RATAKERQKNEDKSNREEAR*LKEESTG-RFKDTDRLSSSPVIGKDSVSAWLVGR 164
RA+AKERQKN +KS REEAR LK+++ G K++ S V +D S WL G+
Sbjct: 386 RASAKERQKNLEKSIREEARRLKDDTGGDGDKESRDRSRRGVADRDGESGWLKGQ 440
Score = 38.5 bits (88), Expect(3) = 1e-26
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 151 GWLGGQCQFLDLETISFRQGGLTNEVSAC---CQALLESLQRIQEVHMPVPRPKALAPGK 321
GWL GQ Q LDL++I+F QGG C + + +E+H+P + K L P +
Sbjct: 435 GWLKGQRQMLDLDSIAFTQGGFFMAKKKCDLPDGSYRHLSKGYEEIHVPALKAKPLDPNE 494
>ref|XP_001757495.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691189|gb|EDQ77552.1| predicted protein
[Physcomitrella patens subsp. patens]
Length = 2180
Score = 82.0 bits (201), Expect(3) = 2e-26
Identities = 43/60 (71%), Positives = 49/60 (81%)
Frame = +2
Query: 323 IEISVMLNWAQPAFDRMI*LNRVQSKVYETALFTAEILLLCAPTWARKLNVAMLTILQQI 502
++IS M +WAQPAF M LNRVQSKVYETALFT+E LLLCAPT A K NVAMLTIL ++
Sbjct: 492 VKISDMPDWAQPAFKGMKSLNRVQSKVYETALFTSENLLLCAPTGAGKTNVAMLTILHEL 551
Score = 43.1 bits (100), Expect(3) = 2e-26
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 151 GWLGGQCQFLDLETISFRQGGLTNEVSACCQALLE---SLQRIQEVHMPVPRPKALAPGK 321
GWL GQ Q LDLE ++F QGGL C L + +EVH+P +PK A G+
Sbjct: 430 GWLKGQRQLLDLEQLTFHQGGLLMANKRCELPPLSYRTPKKGYEEVHVPHLKPKPFAEGE 489
Score = 39.3 bits (90), Expect(3) = 2e-26
Identities = 24/54 (44%), Positives = 31/54 (57%)
Frame = +3
Query: 3 RATAKERQKNEDKSNREEAR*LKEESTGRFKDTDRLSSSPVIGKDSVSAWLVGR 164
RATAKERQKN ++S REEA+ L+++ G D R V S WL G+
Sbjct: 383 RATAKERQKNLERSIREEAKKLRDDG-GEAADRGRRKDREVGVGGGESGWLKGQ 435
>ref|XP_002266580.1| PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase
[Vitis vinifera]
Length = 2177
Score = 91.3 bits (225), Expect(2) = 5e-25
Identities = 57/104 (54%), Positives = 66/104 (63%), Gaps = 5/104 (4%)
Frame = +2
Query: 206 KGGLLM---KCQLVARPFWNHCKGSRKFICLCLGLRRWPLVN--IEISVMLNWAQPAFDR 370
+GG LM KC+L + +H KG + L ++IS M +WAQPAF
Sbjct: 449 QGGFLMANKKCELPTGSYRHHSKGYEEVHVPALKAAALGPGEELVKISAMPDWAQPAFKG 508
Query: 371 MI*LNRVQSKVYETALFTAEILLLCAPTWARKLNVAMLTILQQI 502
M LNRVQSKVYETALFTAE +LLCAPT A K NVAMLTILQQI
Sbjct: 509 MTQLNRVQSKVYETALFTAENVLLCAPTGAGKTNVAMLTILQQI 552
Score = 48.1 bits (113), Expect(2) = 5e-25
Identities = 31/54 (57%), Positives = 36/54 (66%)
Frame = +3
Query: 3 RATAKERQKNEDKSNREEAR*LKEESTGRFKDTDRLSSSPVIGKDSVSAWLVGR 164
RATAKERQK +KS REEAR LK+ES G D DR PV +D+ S WL G+
Sbjct: 387 RATAKERQKILEKSIREEARRLKDESGG---DGDRDRRGPV-DRDAESGWLKGQ 436