BLASTX nr result

ID: Papaver22_contig00017077 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver22_contig00017077
         (488 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004143634.1| PREDICTED: uncharacterized protein LOC101209...   143   2e-32
ref|XP_002524033.1| delta DNA polymerase, putative [Ricinus comm...   134   6e-30
ref|XP_002325451.1| predicted protein [Populus trichocarpa] gi|2...   132   4e-29
ref|NP_563854.1| DNA polymerase delta subunit 4 [Arabidopsis tha...   130   9e-29
ref|XP_002889772.1| DNA polymerase delta subunit 4 family [Arabi...   130   9e-29

>ref|XP_004143634.1| PREDICTED: uncharacterized protein LOC101209940 [Cucumis sativus]
           gi|449523375|ref|XP_004168699.1| PREDICTED:
           uncharacterized protein LOC101228956 [Cucumis sativus]
          Length = 125

 Score =  143 bits (360), Expect = 2e-32
 Identities = 67/123 (54%), Positives = 87/123 (70%)
 Frame = +3

Query: 45  ASKGDIKGFFRQKKSSGVTKPINXXXXXXXXXXXXXXXXLGSDQTQPSALISHGSLDLKD 224
           +++G +K F++Q+KSSG++K                   LGSD  QP+AL+SHGSLDL+D
Sbjct: 3   STRGGLKDFYKQRKSSGISKAKASKPSSRKTKSPANSASLGSDAVQPAALVSHGSLDLQD 62

Query: 225 DHNETEEILRQFDMNMKYGPCIGMTRLARWERAKNLGMNPPKEIETCLRQAKVGLECLWS 404
           D+  +E  LRQFDMN  YGPC+GMTR+ARWERA +LG+NPPK+I T L+  KV LECLW 
Sbjct: 63  DYGVSENTLRQFDMNTAYGPCLGMTRMARWERACSLGLNPPKDIGTLLKAGKVQLECLWD 122

Query: 405 SRV 413
           SRV
Sbjct: 123 SRV 125


>ref|XP_002524033.1| delta DNA polymerase, putative [Ricinus communis]
           gi|223536760|gb|EEF38401.1| delta DNA polymerase,
           putative [Ricinus communis]
          Length = 126

 Score =  134 bits (338), Expect = 6e-30
 Identities = 68/126 (53%), Positives = 89/126 (70%), Gaps = 3/126 (2%)
 Frame = +3

Query: 45  ASKGDIKGFFRQKKSS--GVTKPINXXXXXXXXXXXXXXXXLGSDQTQPSALISHG-SLD 215
           AS  D+K F+RQKK++  G+TK  +                +GS+ TQP+ALISHG +LD
Sbjct: 4   ASPNDMKSFYRQKKTNKTGITKSSSKSKKKSPPKHAAA---IGSNITQPTALISHGGALD 60

Query: 216 LKDDHNETEEILRQFDMNMKYGPCIGMTRLARWERAKNLGMNPPKEIETCLRQAKVGLEC 395
           L+DD+++ EE+LRQFDMNM YGPC+GMTR+ RWERA+ LG+NPPK+IE  L+  KV  EC
Sbjct: 61  LQDDYDKNEEVLRQFDMNMAYGPCLGMTRVGRWERAQRLGLNPPKQIEDLLKGGKVNSEC 120

Query: 396 LWSSRV 413
           LW  RV
Sbjct: 121 LWDGRV 126


>ref|XP_002325451.1| predicted protein [Populus trichocarpa] gi|222862326|gb|EEE99832.1|
           predicted protein [Populus trichocarpa]
          Length = 121

 Score =  132 bits (331), Expect = 4e-29
 Identities = 66/119 (55%), Positives = 84/119 (70%), Gaps = 1/119 (0%)
 Frame = +3

Query: 48  SKGDIKGFFRQKKS-SGVTKPINXXXXXXXXXXXXXXXXLGSDQTQPSALISHGSLDLKD 224
           +   +KGF+RQKK+ SG+ KP +                LGSD TQP+AL+SH S DLKD
Sbjct: 4   ASSSMKGFYRQKKNKSGIRKPTSTSKSSLIHAAT-----LGSDITQPTALVSHDSPDLKD 58

Query: 225 DHNETEEILRQFDMNMKYGPCIGMTRLARWERAKNLGMNPPKEIETCLRQAKVGLECLW 401
           D+++ E++LRQFDMN  YGPC+GM+RLARWERA+ LG+NPPKEIE  L+  KV  ECLW
Sbjct: 59  DYDKHEDVLRQFDMNPAYGPCLGMSRLARWERAQRLGLNPPKEIEGLLKGEKVRSECLW 117


>ref|NP_563854.1| DNA polymerase delta subunit 4 [Arabidopsis thaliana]
           gi|98961061|gb|ABF59014.1| At1g09815 [Arabidopsis
           thaliana] gi|332190377|gb|AEE28498.1| DNA polymerase
           delta subunit 4 [Arabidopsis thaliana]
          Length = 124

 Score =  130 bits (328), Expect = 9e-29
 Identities = 64/119 (53%), Positives = 82/119 (68%)
 Frame = +3

Query: 57  DIKGFFRQKKSSGVTKPINXXXXXXXXXXXXXXXXLGSDQTQPSALISHGSLDLKDDHNE 236
           ++KGF++Q KS+ +T  I+                 GSD TQP+ALISHGS+DL +D+++
Sbjct: 7   NLKGFYKQTKSN-ITGGISKSKPSSRKVAPKHAAAQGSDVTQPAALISHGSVDLNEDYDK 65

Query: 237 TEEILRQFDMNMKYGPCIGMTRLARWERAKNLGMNPPKEIETCLRQAKVGLECLWSSRV 413
            EE+LRQFDMN+ YGPC+GMTRL RWERA  LGMNPP EIE  L+  KV  +CLW  RV
Sbjct: 66  EEEMLRQFDMNITYGPCLGMTRLDRWERAVRLGMNPPNEIEKLLKTGKVQQDCLWQGRV 124


>ref|XP_002889772.1| DNA polymerase delta subunit 4 family [Arabidopsis lyrata subsp.
           lyrata] gi|297335614|gb|EFH66031.1| DNA polymerase delta
           subunit 4 family [Arabidopsis lyrata subsp. lyrata]
          Length = 122

 Score =  130 bits (328), Expect = 9e-29
 Identities = 67/124 (54%), Positives = 85/124 (68%)
 Frame = +3

Query: 42  MASKGDIKGFFRQKKSSGVTKPINXXXXXXXXXXXXXXXXLGSDQTQPSALISHGSLDLK 221
           MA+K ++KGF++Q KS+ +T  I+                 GSD  QP+ALISHGSLDL 
Sbjct: 1   MATK-NLKGFYKQTKSN-ITGGISKSKPSSRKVTPKHAAAQGSDVIQPAALISHGSLDLN 58

Query: 222 DDHNETEEILRQFDMNMKYGPCIGMTRLARWERAKNLGMNPPKEIETCLRQAKVGLECLW 401
           +D+++ EE+LRQFDMN+ YGPC+GMTRL RWERA  LGMNPP EIE  L+  KV  +CLW
Sbjct: 59  EDYDKEEEMLRQFDMNIAYGPCLGMTRLDRWERALRLGMNPPNEIEKLLKTGKVQQDCLW 118

Query: 402 SSRV 413
             RV
Sbjct: 119 QGRV 122


Top