BLASTX nr result
ID: Papaver22_contig00008454
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Papaver22_contig00008454
(618 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ACJ63311.1| RNA polymerase III large subunit [Papaver orientale] 125 3e-58
gb|ACJ63310.1| RNA polymerase III large subunit [Liriodendron tu... 117 5e-44
gb|AAS79695.1| RNA polymerase III large subunit [Cycas revoluta] 118 4e-43
gb|AAS79696.1| RNA polymerase III large subunit [Zamia muricata] 118 9e-43
gb|AAS79697.1| RNA polymerase III large subunit [Ginkgo biloba] 118 2e-41
>gb|ACJ63311.1| RNA polymerase III large subunit [Papaver orientale]
Length = 554
Score = 125 bits (314), Expect(3) = 3e-58
Identities = 63/89 (70%), Positives = 69/89 (77%)
Frame = +3
Query: 3 RNSPLIISQCGSRGFPDNISQIIACVGQQSVVGCPGSSRFTDRNLPHFLRNSTAPDAKGF 182
RNSPLI+SQCGS+G P NI+Q+IACVGQQSV G + F DR+LPHF RNS PDAKGF
Sbjct: 265 RNSPLIMSQCGSKGSPSNITQMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGF 324
Query: 183 VENSFCTGLIATGLFHTIMAGREGLVDTA 269
VENSF TGL AT F M GREGLVDTA
Sbjct: 325 VENSFYTGLTATEFFFHTMGGREGLVDTA 353
Score = 104 bits (259), Expect(3) = 3e-58
Identities = 55/88 (62%), Positives = 62/88 (70%), Gaps = 6/88 (6%)
Frame = +1
Query: 373 LKWKCGSPLNFDRLYLKAKAIL------SLSPKEIKKLADARF*AHDMTPEGDCSEAFKK 534
++ K G+PLN DRLY+K KA SLSP EI KL AR HDMTPEG CS+AFKK
Sbjct: 403 MEGKDGTPLNLDRLYMKVKATCPARGHSSLSPAEILKLVVARLSKHDMTPEGGCSDAFKK 462
Query: 535 SLLDDEAFKEGKEGGFLYKCTTSLTNTR 618
SLLD+E F + KEGGFL KC TSL NTR
Sbjct: 463 SLLDEEGFMQNKEGGFLGKCITSLKNTR 490
Score = 42.7 bits (99), Expect(3) = 3e-58
Identities = 21/26 (80%), Positives = 22/26 (84%)
Frame = +2
Query: 269 GYMSRRLIKA*EDLSIQYDNTVHKAS 346
GYMSRRLIKA EDLSI YD+TV AS
Sbjct: 360 GYMSRRLIKALEDLSIHYDSTVRSAS 385
>gb|ACJ63310.1| RNA polymerase III large subunit [Liriodendron tulipifera]
Length = 546
Score = 117 bits (292), Expect(3) = 5e-44
Identities = 60/89 (67%), Positives = 66/89 (74%)
Frame = +3
Query: 3 RNSPLIISQCGSRGFPDNISQIIACVGQQSVVGCPGSSRFTDRNLPHFLRNSTAPDAKGF 182
RNSPLI+SQCGS+G P NISQ++ACVGQQSV G + F DR+LPHF NS P AKGF
Sbjct: 267 RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPINSKTPSAKGF 326
Query: 183 VENSFCTGLIATGLFHTIMAGREGLVDTA 269
V NSF TGL AT F M GREGLVDTA
Sbjct: 327 VANSFYTGLTATEFFFHTMGGREGLVDTA 355
Score = 70.9 bits (172), Expect(3) = 5e-44
Identities = 43/89 (48%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Frame = +1
Query: 373 LKWKCGSPLNFDRLYLKAKAIL-------SLSPKEIKKLADARF*AHDMTPEGDCSEAFK 531
++ K G PLN DRL++K KA SLSP EI K AD R HDMTPEG CS AFK
Sbjct: 405 MEGKEGMPLNLDRLFMKTKATFPATRAHTSLSPSEILKAADDRLSKHDMTPEGGCSAAFK 464
Query: 532 KSLLDDEAFKEGKEGGFLYKCTTSLTNTR 618
+SL D FL KC +L TR
Sbjct: 465 ESLSD-----------FLKKCVVALRKTR 482
Score = 36.6 bits (83), Expect(3) = 5e-44
Identities = 17/26 (65%), Positives = 20/26 (76%)
Frame = +2
Query: 269 GYMSRRLIKA*EDLSIQYDNTVHKAS 346
GYMSRRL+K+ EDLS YD TV +S
Sbjct: 362 GYMSRRLMKSLEDLSTYYDETVRNSS 387
>gb|AAS79695.1| RNA polymerase III large subunit [Cycas revoluta]
Length = 548
Score = 118 bits (295), Expect(3) = 4e-43
Identities = 61/89 (68%), Positives = 66/89 (74%)
Frame = +3
Query: 3 RNSPLIISQCGSRGFPDNISQIIACVGQQSVVGCPGSSRFTDRNLPHFLRNSTAPDAKGF 182
RNSPLI+SQCGS+G P NISQ+IACVGQQSV G + F DR+LPHF RN P AKGF
Sbjct: 267 RNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGF 326
Query: 183 VENSFCTGLIATGLFHTIMAGREGLVDTA 269
V NSF TGL AT F M GREGLVDTA
Sbjct: 327 VANSFYTGLTATEFFFHTMGGREGLVDTA 355
Score = 63.9 bits (154), Expect(3) = 4e-43
Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 6/64 (9%)
Frame = +1
Query: 367 IPLKWKCGSPLNFDRLYLKAKAI------LSLSPKEIKKLADARF*AHDMTPEGDCSEAF 528
+ ++ K G+PLN DRL +K KAI +SLSP EI K + R HDMTPEG CS AF
Sbjct: 403 VNMEGKDGTPLNLDRLLMKTKAICPANGVISLSPAEISKRVEERLSKHDMTPEGGCSAAF 462
Query: 529 KKSL 540
K SL
Sbjct: 463 KNSL 466
Score = 39.3 bits (90), Expect(3) = 4e-43
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +2
Query: 269 GYMSRRLIKA*EDLSIQYDNTVHKAS 346
GYMSRRL+KA EDLS YD TV AS
Sbjct: 362 GYMSRRLMKALEDLSTHYDGTVRNAS 387
>gb|AAS79696.1| RNA polymerase III large subunit [Zamia muricata]
Length = 548
Score = 118 bits (295), Expect(3) = 9e-43
Identities = 61/89 (68%), Positives = 66/89 (74%)
Frame = +3
Query: 3 RNSPLIISQCGSRGFPDNISQIIACVGQQSVVGCPGSSRFTDRNLPHFLRNSTAPDAKGF 182
RNSPLI+SQCGS+G P NISQ+IACVGQQSV G + F DR+LPHF RN P AKGF
Sbjct: 267 RNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGF 326
Query: 183 VENSFCTGLIATGLFHTIMAGREGLVDTA 269
V NSF TGL AT F M GREGLVDTA
Sbjct: 327 VANSFYTGLTATEFFFHTMGGREGLVDTA 355
Score = 62.8 bits (151), Expect(3) = 9e-43
Identities = 39/90 (43%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Frame = +1
Query: 367 IPLKWKCGSPLNFDRLYLKAKAI------LSLSPKEIKKLADARF*AHDMTPEGDCSEAF 528
+ ++ K G+PLN DR+ +KAKA SLSP EI K + R HDMTPEG CS AF
Sbjct: 403 VNMEGKNGTPLNLDRILMKAKATCPANGAFSLSPSEISKRVEDRLSKHDMTPEGGCSAAF 462
Query: 529 KKSLLDDEAFKEGKEGGFLYKCTTSLTNTR 618
K SL FL K + + NTR
Sbjct: 463 KNSLAQ-----------FLEKQISLIQNTR 481
Score = 39.3 bits (90), Expect(3) = 9e-43
Identities = 19/26 (73%), Positives = 20/26 (76%)
Frame = +2
Query: 269 GYMSRRLIKA*EDLSIQYDNTVHKAS 346
GYMSRRL+KA EDLS YD TV AS
Sbjct: 362 GYMSRRLMKALEDLSTHYDGTVRNAS 387
>gb|AAS79697.1| RNA polymerase III large subunit [Ginkgo biloba]
Length = 548
Score = 118 bits (295), Expect(3) = 2e-41
Identities = 61/89 (68%), Positives = 66/89 (74%)
Frame = +3
Query: 3 RNSPLIISQCGSRGFPDNISQIIACVGQQSVVGCPGSSRFTDRNLPHFLRNSTAPDAKGF 182
RNSPLI+SQCGS+G P NISQ+IACVGQQSV G + F DR+LPHF RN P AKGF
Sbjct: 267 RNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRNDKTPAAKGF 326
Query: 183 VENSFCTGLIATGLFHTIMAGREGLVDTA 269
V NSF TGL AT F M GREGLVDTA
Sbjct: 327 VANSFYTGLTATEFFFHTMGGREGLVDTA 355
Score = 57.8 bits (138), Expect(3) = 2e-41
Identities = 31/64 (48%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Frame = +1
Query: 367 IPLKWKCGSPLNFDRLYLKAKAI------LSLSPKEIKKLADARF*AHDMTPEGDCSEAF 528
+ ++ K G PLN DRL +K KA ++LSP EI + + R HDMTPEG CS AF
Sbjct: 403 VNMEGKDGPPLNLDRLLMKTKATCPANGSVALSPSEIIRKVEERLLKHDMTPEGGCSAAF 462
Query: 529 KKSL 540
K SL
Sbjct: 463 KSSL 466
Score = 39.7 bits (91), Expect(3) = 2e-41
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = +2
Query: 269 GYMSRRLIKA*EDLSIQYDNTVHKAS 346
GYMSRRL+KA EDLS YD+TV AS
Sbjct: 362 GYMSRRLMKALEDLSTHYDSTVRNAS 387