BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Papaver22_contig00001910
         (1944 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   437   e-120
ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]...   436   e-120
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   429   e-117
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   427   e-117
ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]...   427   e-117

>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  437 bits (1123), Expect = e-120
 Identities = 230/354 (64%), Positives = 269/354 (75%), Gaps = 7/354 (1%)
 Frame = +1

Query: 526  KNMAIYRLCMVKNVDASDPDKQYKMDNKYTHKYLNCVWGSDNSAARWQMIMISDSPPLES 705
            K   IYRLCMVKNVDAS+PD+QYK++NK T+KYLN VWG+++SAARWQM M+SDS PLE 
Sbjct: 310  KTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEE 369

Query: 706  EFNEWMEELERKGGRKPSRQEVLEKQEAIQKALTYVYSAATVKQMLQEKKSASSRPLNVA 885
            EF +W++E++R GGR PS+Q+VLEK++AIQKA+T+VYSAATVKQMLQEKKSAS+RPLNVA
Sbjct: 370  EFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVA 429

Query: 886  AEKDRLRREMDIAESRRDMGEVERIRARLLELESSRQSKLKDTKALRLAEMNKKNRAENF 1065
            AEKDRLRRE++IA+S+ D  EVERI+ RLLELE+SRQ+K KD KAL+LAEMN+KNR ENF
Sbjct: 430  AEKDRLRRELEIAQSKYDEAEVERIKTRLLELEASRQAKQKDAKALKLAEMNRKNRFENF 489

Query: 1066 KNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVPNATEGDETAASADGDATAEVAALA 1245
            KNASE+KPVNTGLKAGEAGYDPFSRRWTRSRNYY   A +  E AA+ +      VA   
Sbjct: 490  KNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYY---AAKPGEKAAAGNNSVNGNVA--- 543

Query: 1246 FGSGSNXXXXXXXXXXXXXXXXXXXXXX-------DTNAPVDLGTESNSLHNFDLLISLT 1404
             G+GSN                             DT+APVD GTESN LHNF+L ISL 
Sbjct: 544  -GAGSNGTGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTESNMLHNFELPISLA 602

Query: 1405 ELQKXXXXXXXXXXXXXRKQRIEATVGKRVPENDGRRHSLTLTVSDYKRRRGLL 1566
             LQK             RKQ+IEATVG RV ENDGRRH+LTLTVSDYKRRRGLL
Sbjct: 603  LLQKFGGAQGAQAGFMARKQKIEATVGFRVSENDGRRHALTLTVSDYKRRRGLL 656



 Score = 84.3 bits (207), Expect = 1e-13
 Identities = 57/136 (41%), Positives = 78/136 (57%), Gaps = 5/136 (3%)
 Frame = +3

Query: 12  KMMQPGKETPQPPLSRVRSSARSAEKGAAKNDALNELRAKRMRHQDPEVLRK-RDASRGG 188
           K+  P K++P    SR+R+SARSA++ +AKNDALNELRAKR++ QDPE  R+ R+ASR  
Sbjct: 153 KVAVPRKQSPPMSSSRMRASARSADR-SAKNDALNELRAKRLKQQDPEAHRRLREASRNA 211

Query: 189 TSVGRDSSPNRRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLGDSDEDRL----DTL 356
            S  R  SP +RK                              G+ DSD+DR     +  
Sbjct: 212 GS--RHFSPPKRKPFTSTSLSSSSHSESESRSHSDDEGSTGDGGIVDSDDDRALAGSEGP 269

Query: 357 TFEDIKQITIRRSKLS 404
           +F+D+K+ITIRRSKL+
Sbjct: 270 SFQDVKEITIRRSKLA 285


>ref|XP_002316628.1| PAF1 complex component [Populus trichocarpa]
            gi|222859693|gb|EEE97240.1| PAF1 complex component
            [Populus trichocarpa]
          Length = 664

 Score =  436 bits (1122), Expect = e-120
 Identities = 224/351 (63%), Positives = 268/351 (76%), Gaps = 4/351 (1%)
 Frame = +1

Query: 526  KNMAIYRLCMVKNVDASDPDKQYKMDNKYTHKYLNCVWGSDNSAARWQMIMISDSPPLES 705
            K   +YRLCMV+NVDA++PDK YK++NK T+KYLN  WG+D+SAARWQM M+SDS P E 
Sbjct: 315  KTGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADSSAARWQMAMVSDSAPTEE 374

Query: 706  EFNEWMEELERKGGRKPSRQEVLEKQEAIQKALTYVYSAATVKQMLQEKKSASSRPLNVA 885
            E+ +W+ E ER GGR PS+Q++LEK+EAI+K+ T+VYSAATVKQMLQEKKSASSRPLNVA
Sbjct: 375  EYKQWVREAERGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVA 434

Query: 886  AEKDRLRREMDIAESRRDMGEVERIRARLLELESSRQSKLKDTKALRLAEMNKKNRAENF 1065
            AEKDRLRRE++IA+SR D  EVERI AR+LELE+SRQ+K+KD KALRLAEMN+KNR ENF
Sbjct: 435  AEKDRLRRELEIAQSRHDEAEVERIEARILELEASRQAKVKDAKALRLAEMNRKNRVENF 494

Query: 1066 KNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVPNATEGDETAASADGDATAEVAALA 1245
            +NASELKP+NTGLKAGEAGYDPFSRRWTRSRNYYV N   GD+  A+++ +A  + AALA
Sbjct: 495  RNASELKPINTGLKAGEAGYDPFSRRWTRSRNYYVSNPAGGDDAVAASNSEAN-DTAALA 553

Query: 1246 FG----SGSNXXXXXXXXXXXXXXXXXXXXXXDTNAPVDLGTESNSLHNFDLLISLTELQ 1413
                  +G+                       DT+APVD GTESN++HNF+L ISL  LQ
Sbjct: 554  DSDHVVAGAISESGVAATAAALDAAADAGKLVDTSAPVDQGTESNTMHNFELEISLIALQ 613

Query: 1414 KXXXXXXXXXXXXXRKQRIEATVGKRVPENDGRRHSLTLTVSDYKRRRGLL 1566
            K             RKQRIEA VG +V ENDGRRH+LTLTV DYKRRRGLL
Sbjct: 614  KFRGPQGAHAGFMARKQRIEANVGCQVRENDGRRHALTLTVGDYKRRRGLL 664



 Score = 84.3 bits (207), Expect = 1e-13
 Identities = 58/130 (44%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
 Frame = +3

Query: 30  KETPQPPLSR-VRSSARSAEKGAAKNDALNELRAKRMRHQDPEVLRK-RDASRGGTSVGR 203
           KETP  P SR VRSSARSA++ AAK+DALNELRAKR++ QDPE  RK RDASRG      
Sbjct: 161 KETPPLPSSRGVRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGSAGSRG 220

Query: 204 DSSPNRRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLGDSDED---RLDTLTFEDIK 374
            +   +                                G+ DSDED        T+EDIK
Sbjct: 221 FAQVKKNNFTSARLSSSSSESESGSRSHSEDEGSTGDGGMADSDEDGDPGSRGPTYEDIK 280

Query: 375 QITIRRSKLS 404
           +ITIRR+KL+
Sbjct: 281 EITIRRTKLA 290


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  429 bits (1102), Expect = e-117
 Identities = 225/350 (64%), Positives = 264/350 (75%), Gaps = 3/350 (0%)
 Frame = +1

Query: 526  KNMAIYRLCMVKNVDASDPDKQYKMDNKYTHKYLNCVWGSDNSAARWQMIMISDSPPLES 705
            K   IYRLCMVKNVDAS+PD+QYK++NK T+KYLN VWG+++SAARWQM M+SDS P+E 
Sbjct: 310  KTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPMEE 369

Query: 706  EFNEWMEELERKGGRKPSRQEVLEKQEAIQKALTYVYSAATVKQMLQEKKSASSRPLNVA 885
            EF +W++E++  GGR PS+Q+VLEK++AIQKA+T+VYSAATVKQMLQEKKSAS+RPLNVA
Sbjct: 370  EFKQWVKEVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVA 429

Query: 886  AEKDRLRREMDIAESRRDMGEVERIRARLLELESSRQSKLKDTKALRLAEMNKKNRAENF 1065
            AEKDRLRRE++IA+S+ D  EVERI+ RL ELE+SRQ+K KD KAL+LAEMN+KNR ENF
Sbjct: 430  AEKDRLRRELEIAQSKHDEAEVERIKTRLQELEASRQAKQKDAKALKLAEMNRKNRFENF 489

Query: 1066 KNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVPNATEGDETAASADGDATAEVAAL- 1242
            KNASELKPVN GLKAGEAGYDPFSRRWTRSRNYY   A +  E AA+ +      VA   
Sbjct: 490  KNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYY---AAKPGEKAAAGNNIVNGNVAGAG 546

Query: 1243 --AFGSGSNXXXXXXXXXXXXXXXXXXXXXXDTNAPVDLGTESNSLHNFDLLISLTELQK 1416
              A G+                         DT+APVD GTESN LHNF+L ISL  LQK
Sbjct: 547  SNATGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTESNMLHNFELPISLALLQK 606

Query: 1417 XXXXXXXXXXXXXRKQRIEATVGKRVPENDGRRHSLTLTVSDYKRRRGLL 1566
                         RKQRIE+TVG RV ENDGRRH+LTLTVSDYKRRRGLL
Sbjct: 607  YGGAPGAQAGFMARKQRIESTVGFRVSENDGRRHALTLTVSDYKRRRGLL 656



 Score = 83.6 bits (205), Expect = 2e-13
 Identities = 57/136 (41%), Positives = 76/136 (55%), Gaps = 5/136 (3%)
 Frame = +3

Query: 12  KMMQPGKETPQPPLSRVRSSARSAEKGAAKNDALNELRAKRMRHQDPEVLRK-RDASRGG 188
           K   P K++P    SR+R+SARSA++ +AKNDALNELRAKR++ QDPE  R+ R+ASR  
Sbjct: 153 KAAAPRKQSPPMSSSRMRASARSADR-SAKNDALNELRAKRLKQQDPEAHRRLREASRNA 211

Query: 189 TSVGRDSSPNRRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLGDSDEDRL----DTL 356
               R  SP +RK                              G+ DSD+DR     +  
Sbjct: 212 GP--RHFSPPKRKTFTSTSLSSSSHSESESRSHSDDEGSTGDGGIADSDDDRALAGSEGP 269

Query: 357 TFEDIKQITIRRSKLS 404
           +F+DIK+ITIRRSKL+
Sbjct: 270 SFQDIKEITIRRSKLA 285


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  427 bits (1097), Expect = e-117
 Identities = 220/350 (62%), Positives = 267/350 (76%), Gaps = 3/350 (0%)
 Frame = +1

Query: 526  KNMAIYRLCMVKNVDASDPDKQYKMDNKYTHKYLNCVWGSDNSAARWQMIMISDSPPLES 705
            K+  IYRLC+V+NVDA+DPD+ YK++NK T+KYLN +WG+++SAARWQM MISDS P E 
Sbjct: 312  KSGPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNESSAARWQMAMISDSAPTED 371

Query: 706  EFNEWMEELERKGGRKPSRQEVLEKQEAIQKALTYVYSAATVKQMLQEKKSASSRPLNVA 885
            E+ +W+ E+ER GGR P++Q++LEK+EAI+K+ T+VYSAATVKQMLQEKKSASSRPLNVA
Sbjct: 372  EYKQWVREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVA 431

Query: 886  AEKDRLRREMDIAESRRDMGEVERIRARLLELESSRQSKLKDTKALRLAEMNKKNRAENF 1065
            AEKDRLRRE+++A+S++D  EVERIRAR+ ELE+SRQ++ KD KA+RLAEMN+KNRAENF
Sbjct: 432  AEKDRLRRELEVAQSKQDDAEVERIRARIQELEASRQTQGKDAKAIRLAEMNRKNRAENF 491

Query: 1066 KNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVPNATEGDETAASADGDATAEVAA-- 1239
            +NASELKPVNT LKAGEAGYDPFSRRWTRSRNYYV     GD  AA+ + +A+  VA   
Sbjct: 492  RNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPAGGD-AAAATNNEASGTVAVAN 550

Query: 1240 -LAFGSGSNXXXXXXXXXXXXXXXXXXXXXXDTNAPVDLGTESNSLHNFDLLISLTELQK 1416
                 +G +                      DT APVD GTESN+LHNF+L ISLT LQK
Sbjct: 551  KTESAAGVSAEAGMAATAAALEAAADAGKLVDTAAPVDQGTESNTLHNFELPISLTALQK 610

Query: 1417 XXXXXXXXXXXXXRKQRIEATVGKRVPENDGRRHSLTLTVSDYKRRRGLL 1566
                         RKQRIEAT+G RV END +RH LTLTVSDYKRRRGLL
Sbjct: 611  FGGAQGAQAGFMARKQRIEATIGCRVSENDEKRHVLTLTVSDYKRRRGLL 660



 Score = 83.2 bits (204), Expect = 2e-13
 Identities = 60/130 (46%), Positives = 75/130 (57%), Gaps = 5/130 (3%)
 Frame = +3

Query: 30  KETPQPPLSR-VRSSARSAEKGAAKNDALNELRAKRMRHQDPEVLRK-RDASRGGTSVGR 203
           KETP  P SR VR+SARSA++ AAK+DALNEL+A+R++ QDPE  RK RDASR G S  R
Sbjct: 160 KETPPLPSSRGVRTSARSADRAAAKDDALNELKARRLKQQDPEAHRKLRDASRRG-SGSR 218

Query: 204 DSSPNRRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLGDSDED---RLDTLTFEDIK 374
             SP +RK                              G+ DSD+D        TF+DI+
Sbjct: 219 GFSPIKRKRFTSASLSSSSSESESRSHSEDEGSTGDG-GMADSDDDGEPGSQGPTFDDIR 277

Query: 375 QITIRRSKLS 404
           +ITIRRSKL+
Sbjct: 278 EITIRRSKLA 287


>ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]
            gi|222848649|gb|EEE86196.1| PAF1 complex component
            [Populus trichocarpa]
          Length = 662

 Score =  427 bits (1097), Expect = e-117
 Identities = 218/350 (62%), Positives = 262/350 (74%), Gaps = 3/350 (0%)
 Frame = +1

Query: 526  KNMAIYRLCMVKNVDASDPDKQYKMDNKYTHKYLNCVWGSDNSAARWQMIMISDSPPLES 705
            K+  +YRLCMV+NVDA++PDK YK++NK T+KYLN  WG+D SAARWQM M+SDS P E 
Sbjct: 313  KSGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADTSAARWQMAMVSDSGPTEE 372

Query: 706  EFNEWMEELERKGGRKPSRQEVLEKQEAIQKALTYVYSAATVKQMLQEKKSASSRPLNVA 885
            E+ +W+ E+E  GGR PS+Q++LEK+EAI+K+ T+VYSAATVKQMLQEKKSASSRPLNVA
Sbjct: 373  EYKQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVA 432

Query: 886  AEKDRLRREMDIAESRRDMGEVERIRARLLELESSRQSKLKDTKALRLAEMNKKNRAENF 1065
            AEKDRLRRE++IA+S+ D  EVERI AR+ ELE+SR +K+KD KA+RLAEMN+KNR ENF
Sbjct: 433  AEKDRLRRELEIAQSKHDEAEVERINARIEELEASRHAKVKDAKAIRLAEMNRKNRVENF 492

Query: 1066 KNASELKPVNTGLKAGEAGYDPFSRRWTRSRNYYVPNATEGDETAASADGDATAEVAALA 1245
            +NASE+KPVNTGLKAGEAGYDPFSRRWTRSRNYYV    E D+  A+   +A   VA  A
Sbjct: 493  RNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPAEADDPVATKISEANETVAVAA 552

Query: 1246 FG---SGSNXXXXXXXXXXXXXXXXXXXXXXDTNAPVDLGTESNSLHNFDLLISLTELQK 1416
                 +G                        DT+APVD GTESN++H+F+L ISL  LQ+
Sbjct: 553  SNQVVAGVMSEAGVAATEAALEAAADAGKLVDTSAPVDQGTESNTMHSFELEISLIALQE 612

Query: 1417 XXXXXXXXXXXXXRKQRIEATVGKRVPENDGRRHSLTLTVSDYKRRRGLL 1566
                         RKQRIEATVG RVPENDGRRH+LTLTV DYKRRRGLL
Sbjct: 613  FGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVGDYKRRRGLL 662



 Score = 84.3 bits (207), Expect = 1e-13
 Identities = 60/130 (46%), Positives = 71/130 (54%), Gaps = 5/130 (3%)
 Frame = +3

Query: 30  KETPQPPLSR-VRSSARSAEKGAAKNDALNELRAKRMRHQDPEVLRK-RDASRGGTSVGR 203
           KETP  P SR VRSSARSA++ AAK+DALNELRAKR++ QDPE  RK RD SRG  S G 
Sbjct: 161 KETPPLPSSRGVRSSARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRG--SAGS 218

Query: 204 DSSPNRRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGLGDSDED---RLDTLTFEDIK 374
                 +K                              G+ DSDED        T+EDIK
Sbjct: 219 RGFSQVKKNNFTSASLSSSSSESGSRSHSEDEGSTGDGGMADSDEDVEPGSKGPTYEDIK 278

Query: 375 QITIRRSKLS 404
           +ITIRR+KL+
Sbjct: 279 EITIRRTKLA 288