BLASTX nr result

ID: Panax21_contig00037953 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00037953
         (491 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279863.2| PREDICTED: putative E3 ubiquitin-protein lig...   124   6e-27
emb|CBI19874.3| unnamed protein product [Vitis vinifera]              124   6e-27
emb|CAN74785.1| hypothetical protein VITISV_011516 [Vitis vinifera]   124   6e-27
ref|XP_002300701.1| predicted protein [Populus trichocarpa] gi|2...   112   4e-23
ref|XP_002510542.1| hypothetical protein RCOM_1598060 [Ricinus c...    72   5e-11

>ref|XP_002279863.2| PREDICTED: putative E3 ubiquitin-protein ligase LIN-1-like [Vitis
           vinifera]
          Length = 1494

 Score =  124 bits (312), Expect = 6e-27
 Identities = 69/149 (46%), Positives = 96/149 (64%)
 Frame = +1

Query: 43  NVFVESKDRAQKIASRSSMRKNKDPAIGSNVLPTKVNSRKHSPKAFTPVDSPKVLTPKSS 222
           + +++S+D+  ++ S SSM+ N    +G  V P K+ S+  S  +F+  DSPK  + K S
Sbjct: 350 SAYMDSEDKTYQVVSHSSMKMNIYKEMGPKVQPPKIRSQLPSSTSFSSTDSPKT-SLKIS 408

Query: 223 SPKPDFYSKKEPSSVLRLLSSRATDSKVSASMPASPFLNQDSGTSSGDSDNEMPELPKSV 402
           SPK D +  K P+SVLRLLSSRA DS VS S+P SP L +DS  SS DSD E+ ELP+S 
Sbjct: 409 SPKSDSHCHKGPTSVLRLLSSRAMDSTVSTSLPVSPRLYKDSSISSADSDGEVIELPRSC 468

Query: 403 RTTVSHTRSMSYGNVNSQLSEKSFSNDCD 489
           R    H +S+S+ N+N Q+SE S  N+ D
Sbjct: 469 RKNHGHNQSISHQNLNRQVSENSSLNEND 497


>emb|CBI19874.3| unnamed protein product [Vitis vinifera]
          Length = 1510

 Score =  124 bits (312), Expect = 6e-27
 Identities = 69/149 (46%), Positives = 96/149 (64%)
 Frame = +1

Query: 43  NVFVESKDRAQKIASRSSMRKNKDPAIGSNVLPTKVNSRKHSPKAFTPVDSPKVLTPKSS 222
           + +++S+D+  ++ S SSM+ N    +G  V P K+ S+  S  +F+  DSPK  + K S
Sbjct: 366 SAYMDSEDKTYQVVSHSSMKMNIYKEMGPKVQPPKIRSQLPSSTSFSSTDSPKT-SLKIS 424

Query: 223 SPKPDFYSKKEPSSVLRLLSSRATDSKVSASMPASPFLNQDSGTSSGDSDNEMPELPKSV 402
           SPK D +  K P+SVLRLLSSRA DS VS S+P SP L +DS  SS DSD E+ ELP+S 
Sbjct: 425 SPKSDSHCHKGPTSVLRLLSSRAMDSTVSTSLPVSPRLYKDSSISSADSDGEVIELPRSC 484

Query: 403 RTTVSHTRSMSYGNVNSQLSEKSFSNDCD 489
           R    H +S+S+ N+N Q+SE S  N+ D
Sbjct: 485 RKNHGHNQSISHQNLNRQVSENSSLNEND 513


>emb|CAN74785.1| hypothetical protein VITISV_011516 [Vitis vinifera]
          Length = 1494

 Score =  124 bits (312), Expect = 6e-27
 Identities = 69/149 (46%), Positives = 96/149 (64%)
 Frame = +1

Query: 43  NVFVESKDRAQKIASRSSMRKNKDPAIGSNVLPTKVNSRKHSPKAFTPVDSPKVLTPKSS 222
           + +++S+D+  ++ S SSM+ N    +G  V P K+ S+  S  +F+  DSPK  + K S
Sbjct: 350 SAYMDSEDKTYQVVSHSSMKMNIYKEMGPKVQPPKIRSQLPSSTSFSSTDSPKT-SLKIS 408

Query: 223 SPKPDFYSKKEPSSVLRLLSSRATDSKVSASMPASPFLNQDSGTSSGDSDNEMPELPKSV 402
           SPK D +  K P+SVLRLLSSRA DS VS S+P SP L +DS  SS DSD E+ ELP+S 
Sbjct: 409 SPKSDSHXHKGPTSVLRLLSSRAMDSTVSTSLPVSPRLYKDSSISSADSDGEVIELPRSC 468

Query: 403 RTTVSHTRSMSYGNVNSQLSEKSFSNDCD 489
           R    H +S+S+ N+N Q+SE S  N+ D
Sbjct: 469 RKNHGHNQSISHQNLNRQVSENSSLNEND 497


>ref|XP_002300701.1| predicted protein [Populus trichocarpa] gi|222842427|gb|EEE79974.1|
           predicted protein [Populus trichocarpa]
          Length = 1518

 Score =  112 bits (279), Expect = 4e-23
 Identities = 57/143 (39%), Positives = 93/143 (65%)
 Frame = +1

Query: 43  NVFVESKDRAQKIASRSSMRKNKDPAIGSNVLPTKVNSRKHSPKAFTPVDSPKVLTPKSS 222
           + + +S+D+  K+ +  S++  ++  IG +  P+K  S+KHSPK  +P+DSP++ +PK  
Sbjct: 341 DTYFDSEDKNHKLTTLPSIKSTENKDIGVSKRPSKAKSQKHSPKICSPMDSPRI-SPKII 399

Query: 223 SPKPDFYSKKEPSSVLRLLSSRATDSKVSASMPASPFLNQDSGTSSGDSDNEMPELPKSV 402
           SP     SK+EP ++LR+LS RA DS ++ S+P SP ++++ G+SS DSD E+  L ++V
Sbjct: 400 SPNSVVQSKREPKTILRILSCRAMDSAIATSLPDSPCMSKEHGSSSPDSDGEVIGLLRNV 459

Query: 403 RTTVSHTRSMSYGNVNSQLSEKS 471
           R     TR MS  NV+ Q+ E S
Sbjct: 460 RKNRDRTRRMSCDNVSGQIFENS 482


>ref|XP_002510542.1| hypothetical protein RCOM_1598060 [Ricinus communis]
           gi|223551243|gb|EEF52729.1| hypothetical protein
           RCOM_1598060 [Ricinus communis]
          Length = 1427

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 46/147 (31%), Positives = 80/147 (54%), Gaps = 5/147 (3%)
 Frame = +1

Query: 52  VESKDRAQKIASRSSMRKNKDPAIGSNVLPTKVNSRKHSPKAFTPVDSPKVLTPKSSSPK 231
           ++S+D++ K+ +  S +  +   +G+ + P+K +SR HSP  F+ +DSP    PK S+  
Sbjct: 351 LDSEDKSHKLVTLRSTKMIEIKEMGT-IKPSKSSSRSHSPTIFSSMDSPSTFWPKVSA-N 408

Query: 232 PDFYSKKEPSSVLRLLSSRATDSKVSASMPASPFLNQDSGTSSGDSDNEMPELPKSVRTT 411
            D +SK E +S+ R LSS+  DS  + S+P SP +  D   SS DSD ++   P ++ T 
Sbjct: 409 SDAHSKTESTSLSRHLSSQVMDSTNAPSLPVSPSIINDYSISSRDSDGQLFIDPVTLETG 468

Query: 412 VSHTRS-----MSYGNVNSQLSEKSFS 477
            ++ R      +  GN    ++ +  S
Sbjct: 469 QTYERKAIQEWLKRGNTTCPITRQPLS 495


Top