BLASTX nr result
ID: Panax21_contig00034972
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00034972
(1031 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc... 156 9e-80
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc... 158 1e-79
ref|XP_002442174.1| hypothetical protein SORBIDRAFT_08g015513 [S... 164 2e-78
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 156 4e-78
gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sat... 162 8e-78
>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 900
Score = 156 bits (394), Expect(3) = 9e-80
Identities = 75/131 (57%), Positives = 95/131 (72%)
Frame = +3
Query: 498 RLAGDINNRKSTAGNTIFLGCNLISWVSHKQRTVARSSTESEYKAITDAAADLKWFFSLL 677
R G +R+ST G +F G NLISW + KQ TV+RSSTE+EYKA+ +AAA++ W LL
Sbjct: 754 RSTGGFADRRSTGGFAVFFGDNLISWSARKQATVSRSSTEAEYKALANAAAEIIWVRKLL 813
Query: 678 QELRLPLHHPLVLWCDNLGASYLASNPVFHARTKHIEIDYHFVREMVAAKQISIQFVSSK 857
EL + + LWCDNLGA+Y+ +NPVFHARTKHIE+DYHFVRE VA K + I FVSS+
Sbjct: 814 TELGILHPNAARLWCDNLGATYMTANPVFHARTKHIEVDYHFVREQVAQKLLDIHFVSSQ 873
Query: 858 NNVVDALTKPL 890
+ V D TKP+
Sbjct: 874 DQVADGFTKPI 884
Score = 140 bits (353), Expect(3) = 9e-80
Identities = 72/131 (54%), Positives = 98/131 (74%), Gaps = 3/131 (2%)
Frame = +2
Query: 2 VYVDDILLTGNSGKSLSKLILDLGAEFSLKDLGPLHYFLGVEVERTPAGLLLSQKQYTKN 181
VYVDDI++ +S +++ L+ DL +F+LKDLG LHYFLG+EV+RTP LLLSQ++YT
Sbjct: 576 VYVDDIIVASSSSPAVNALLKDLEKDFALKDLGDLHYFLGIEVKRTPQTLLLSQERYTTE 635
Query: 182 ILQRASMSTSKPQSTPISST-KFSASSG--ILFDNPTLYRQIVGSLQYLSLTRPDISFVV 352
+L+R +M++ KP STP+S+ K S G + + T YR IVG+LQYL+LTRPDIS+ V
Sbjct: 636 LLERVNMTSCKPVSTPLSTAEKLSVEIGDELGPSDVTQYRSIVGALQYLTLTRPDISYSV 695
Query: 353 NKVCQFMHKPT 385
NKVCQF+ PT
Sbjct: 696 NKVCQFLQTPT 706
Score = 49.3 bits (116), Expect(3) = 9e-80
Identities = 21/38 (55%), Positives = 30/38 (78%)
Frame = +1
Query: 391 HWAAVKRILLYLQGTMTRGLFLSASATHTLHAFTDADW 504
HW+AVKRIL YL+GT+ GL + S+++ + AF+DADW
Sbjct: 709 HWSAVKRILRYLKGTLDLGLKIVKSSSNLVSAFSDADW 746
>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 158 bits (400), Expect(3) = 1e-79
Identities = 79/140 (56%), Positives = 101/140 (72%), Gaps = 3/140 (2%)
Frame = +3
Query: 504 AGDINNRKSTAGNTIFLGCNLISWVSHKQRTVARSSTESEYKAITDAAADLKWFFSLLQE 683
AG ++R+ST G +FLG NLISW + KQ TV+RSSTE+EYKA+ +A ++ W +L E
Sbjct: 789 AGCSDDRRSTGGFAVFLGPNLISWSARKQATVSRSSTEAEYKALANATTEVTWVRKILDE 848
Query: 684 LRLPLHHPLVLWCDNLGASYLASNPVFHARTKHIEIDYHFVREMVAAKQISIQFVSSKNN 863
LR+ LWCDNLGA+YL++NPVFHARTKHIEIDYHFVRE VA K + IQF+S+ +
Sbjct: 849 LRIARPSVAQLWCDNLGATYLSANPVFHARTKHIEIDYHFVREQVAKKLLDIQFISTTDQ 908
Query: 864 VVDALTKPLP-PSC--FSHN 914
+ D TK LP PS + HN
Sbjct: 909 LADGFTKSLPAPSLAQYRHN 928
Score = 140 bits (353), Expect(3) = 1e-79
Identities = 72/133 (54%), Positives = 97/133 (72%), Gaps = 3/133 (2%)
Frame = +2
Query: 2 VYVDDILLTGNSGKSLSKLILDLGAEFSLKDLGPLHYFLGVEVERTPAGLLLSQKQYTKN 181
VYVDDI++ +S + ++ L+ DL +F+LKDLG LHYFLG+EV++ GL+LSQ Y +
Sbjct: 618 VYVDDIIVASSSAEVVAALLKDLEKDFALKDLGDLHYFLGIEVKKVSQGLVLSQAWYASD 677
Query: 182 ILQRASMSTSKPQSTPISST-KFSASSGILF--DNPTLYRQIVGSLQYLSLTRPDISFVV 352
IL+RA MS KP STP+S+T K S G ++ + YR IVG+LQYL+LTR D+SF+V
Sbjct: 678 ILKRAGMSICKPASTPLSTTEKLSIEDGDFLGQNDASHYRSIVGALQYLTLTRSDLSFLV 737
Query: 353 NKVCQFMHKPTDV 391
NKVCQF+H PT V
Sbjct: 738 NKVCQFLHSPTTV 750
Score = 46.6 bits (109), Expect(3) = 1e-79
Identities = 21/42 (50%), Positives = 28/42 (66%)
Frame = +1
Query: 391 HWAAVKRILLYLQGTMTRGLFLSASATHTLHAFTDADWPATS 516
HW+AVKRIL Y++GT+ GL S + + AF+DADW S
Sbjct: 751 HWSAVKRILRYIKGTVEFGLRFGKSDSMLISAFSDADWAGCS 792
>ref|XP_002442174.1| hypothetical protein SORBIDRAFT_08g015513 [Sorghum bicolor]
gi|241942867|gb|EES16012.1| hypothetical protein
SORBIDRAFT_08g015513 [Sorghum bicolor]
Length = 757
Score = 164 bits (414), Expect(3) = 2e-78
Identities = 78/134 (58%), Positives = 101/134 (75%)
Frame = +3
Query: 504 AGDINNRKSTAGNTIFLGCNLISWVSHKQRTVARSSTESEYKAITDAAADLKWFFSLLQE 683
AGD+++R+ST G +FLG NLISW + KQ TV+RSSTE+EYKA+ +A A++ W LL E
Sbjct: 620 AGDVDDRRSTGGFAVFLGENLISWTAQKQATVSRSSTEAEYKALANATAEVMWVQKLLAE 679
Query: 684 LRLPLHHPLVLWCDNLGASYLASNPVFHARTKHIEIDYHFVREMVAAKQISIQFVSSKNN 863
L +P LWCDNLGA YL++NPVFHARTKHIEID+HFVRE VA K + I+F+SS++
Sbjct: 680 LCVPHARVARLWCDNLGAKYLSANPVFHARTKHIEIDFHFVRERVAQKLLDIRFISSEDQ 739
Query: 864 VVDALTKPLPPSCF 905
+ D TK LP + F
Sbjct: 740 LADGFTKSLPVTKF 753
Score = 138 bits (348), Expect(3) = 2e-78
Identities = 73/131 (55%), Positives = 96/131 (73%), Gaps = 3/131 (2%)
Frame = +2
Query: 2 VYVDDILLTGNSGKSLSKLILDLGAEFSLKDLGPLHYFLGVEVERTPAGLLLSQKQYTKN 181
VYVDDI++ +S ++ L+ DL +F+LKDLG LHYFLG+EV+R GL+LSQ +Y +
Sbjct: 449 VYVDDIIVASSSLEATKVLLSDLQKDFALKDLGDLHYFLGIEVKRDSNGLVLSQGKYAND 508
Query: 182 ILQRASMSTSKPQSTPISST-KFSASSG--ILFDNPTLYRQIVGSLQYLSLTRPDISFVV 352
IL R+ MS SKP TP+ ST K S + G + ++ T YR +VG+LQYL+LTRPDISF V
Sbjct: 509 ILVRSGMSKSKPVHTPLPSTQKISITDGDKLGEEDCTRYRSLVGALQYLTLTRPDISFAV 568
Query: 353 NKVCQFMHKPT 385
NKVCQF+H PT
Sbjct: 569 NKVCQFLHAPT 579
Score = 38.9 bits (89), Expect(3) = 2e-78
Identities = 22/46 (47%), Positives = 28/46 (60%)
Frame = +1
Query: 367 VHA*TNGCHWAAVKRILLYLQGTMTRGLFLSASATHTLHAFTDADW 504
+HA T H +AVKRIL Y+QGT GL + S + AF+ ADW
Sbjct: 575 LHAPTT-THLSAVKRILRYIQGTSKFGLRIRKSKCRIVSAFSYADW 619
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 156 bits (394), Expect(3) = 4e-78
Identities = 74/136 (54%), Positives = 95/136 (69%)
Frame = +3
Query: 504 AGDINNRKSTAGNTIFLGCNLISWVSHKQRTVARSSTESEYKAITDAAADLKWFFSLLQE 683
AG +++RKST G +FLG NL+SW + KQ TV+RSSTE+EYKA+ + A+L W +LL+E
Sbjct: 1291 AGSVDDRKSTGGFAVFLGSNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTLLRE 1350
Query: 684 LRLPLHHPLVLWCDNLGASYLASNPVFHARTKHIEIDYHFVREMVAAKQISIQFVSSKNN 863
L + +WCDNLGA YL++NPVFHARTKHIE+DYHFVRE V+ K + I FV S +
Sbjct: 1351 LGIDSPKAAKIWCDNLGAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQ 1410
Query: 864 VVDALTKPLPPSCFSH 911
V D TK L H
Sbjct: 1411 VADGFTKALSVRLLEH 1426
Score = 139 bits (351), Expect(3) = 4e-78
Identities = 69/131 (52%), Positives = 97/131 (74%), Gaps = 3/131 (2%)
Frame = +2
Query: 2 VYVDDILLTGNSGKSLSKLILDLGAEFSLKDLGPLHYFLGVEVERTPAGLLLSQKQYTKN 181
VYVDDI++ ++ K+ + L+ DL EF+LKDLG LHYFLG+EV + P G++L+Q++Y +
Sbjct: 1120 VYVDDIIIASSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVPNGIVLTQEKYAND 1179
Query: 182 ILQRASMSTSKPQSTPIS-STKFSASSGILF--DNPTLYRQIVGSLQYLSLTRPDISFVV 352
+L+R +MS KP STP+S S K + G ++ T YR IVG+LQYL+LTRPDI++ V
Sbjct: 1180 LLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSV 1239
Query: 353 NKVCQFMHKPT 385
NKVCQF+H PT
Sbjct: 1240 NKVCQFLHAPT 1250
Score = 44.3 bits (103), Expect(3) = 4e-78
Identities = 22/46 (47%), Positives = 29/46 (63%)
Frame = +1
Query: 367 VHA*TNGCHWAAVKRILLYLQGTMTRGLFLSASATHTLHAFTDADW 504
+HA T HW AVKRIL YL + GL + SA+ +H ++DADW
Sbjct: 1246 LHAPTTD-HWTAVKRILRYLNQCTSLGLNIHKSASTLVHGYSDADW 1290
>gb|AAK02020.2|AC074283_1 Putative gag-pol polyprotein [Oryza sativa]
gi|31430072|gb|AAP52036.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1058
Score = 162 bits (410), Expect(3) = 8e-78
Identities = 79/152 (51%), Positives = 107/152 (70%)
Frame = +3
Query: 513 INNRKSTAGNTIFLGCNLISWVSHKQRTVARSSTESEYKAITDAAADLKWFFSLLQELRL 692
+++++ST G +FLG NLISW + KQ TV+RSSTE+EYKA+ +A A++ W LL+EL +
Sbjct: 909 LDDKRSTGGFAVFLGSNLISWNARKQATVSRSSTEAEYKALANATAEIMWVRKLLEELGI 968
Query: 693 PLHHPLVLWCDNLGASYLASNPVFHARTKHIEIDYHFVREMVAAKQISIQFVSSKNNVVD 872
P LWCDN+GA+YL+ NPVFHARTKHIEIDYHFVRE VA KQ+++QFV S++ V D
Sbjct: 969 SHPGPSQLWCDNIGATYLSVNPVFHARTKHIEIDYHFVREQVAQKQLALQFVPSQDQVAD 1028
Query: 873 ALTKPLPPSCFSHNRSKFKVFPRIPFHLRGNI 968
TK LP R+ + + LRG++
Sbjct: 1029 GFTKALPVRQLQMFRNNLNL---VDLRLRGSV 1057
Score = 130 bits (327), Expect(3) = 8e-78
Identities = 66/133 (49%), Positives = 93/133 (69%), Gaps = 3/133 (2%)
Frame = +2
Query: 2 VYVDDILLTGNSGKSLSKLILDLGAEFSLKDLGPLHYFLGVEVERTPAGLLLSQKQYTKN 181
+YVDDI++ +S ++++ L+ L EF+LKDLG LHYFLG+EV++ +LL+Q++Y
Sbjct: 735 IYVDDIIVASSSAQAVTALLRSLEKEFALKDLGELHYFLGIEVKKASGNILLNQERYASE 794
Query: 182 ILQRASMSTSKPQSTPISST-KFSASSG--ILFDNPTLYRQIVGSLQYLSLTRPDISFVV 352
I++R SM K TP+S+ K SA G + + T YR +VG+LQYL+LTRPDISF V
Sbjct: 795 IVKRVSMENCKSVGTPLSTVEKLSAYEGEKLGEKDATQYRSVVGALQYLTLTRPDISFSV 854
Query: 353 NKVCQFMHKPTDV 391
NKVCQF+ PT V
Sbjct: 855 NKVCQFLQNPTTV 867
Score = 46.6 bits (109), Expect(3) = 8e-78
Identities = 19/38 (50%), Positives = 29/38 (76%)
Frame = +1
Query: 391 HWAAVKRILLYLQGTMTRGLFLSASATHTLHAFTDADW 504
HWA VKRIL Y++GT+ GL + S+++ + A++DADW
Sbjct: 868 HWATVKRILRYVKGTLGLGLKVEKSSSNIVSAYSDADW 905