BLASTX nr result

ID: Panax21_contig00034559 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00034559
         (504 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002320980.1| predicted protein [Populus trichocarpa] gi|2...   124   6e-27
ref|XP_002301504.1| predicted protein [Populus trichocarpa] gi|2...   116   2e-24
ref|XP_002515302.1| DNA replication regulator dpb11, putative [R...   114   1e-23
ref|XP_002270203.2| PREDICTED: BRCT domain-containing protein At...   104   9e-21
emb|CAN62071.1| hypothetical protein VITISV_036193 [Vitis vinifera]   104   9e-21

>ref|XP_002320980.1| predicted protein [Populus trichocarpa] gi|222861753|gb|EEE99295.1|
           predicted protein [Populus trichocarpa]
          Length = 1282

 Score =  124 bits (312), Expect = 6e-27
 Identities = 58/95 (61%), Positives = 68/95 (71%)
 Frame = -1

Query: 300 LQYDRPSKVFSDVRFVLLGFDPINKHMVLSKLXXXXXXXXGQYGPICTHVIVDKLLYDDP 121
           L+ D PSK F  VRFVL+GFDP+NK  V SKL         QY   CTHVIVDK++YDDP
Sbjct: 2   LETDSPSKTFLGVRFVLVGFDPVNKSKVKSKLVGGGGIDAVQYSENCTHVIVDKIVYDDP 61

Query: 120 ICVAARSDGKTLVNGLWVAHSFDVGMAVDPNSVSY 16
           +CV AR+DGKT+V GLWV HSFD+GM VD  S+ Y
Sbjct: 62  VCVGARNDGKTVVTGLWVDHSFDIGMPVDATSIMY 96


>ref|XP_002301504.1| predicted protein [Populus trichocarpa] gi|222843230|gb|EEE80777.1|
           predicted protein [Populus trichocarpa]
          Length = 1221

 Score =  116 bits (290), Expect = 2e-24
 Identities = 55/95 (57%), Positives = 66/95 (69%)
 Frame = -1

Query: 300 LQYDRPSKVFSDVRFVLLGFDPINKHMVLSKLXXXXXXXXGQYGPICTHVIVDKLLYDDP 121
           L+ D  SK F  VRFVL GFDP+++  V SKL         QY   CTHVIVDK++YDDP
Sbjct: 2   LETDSHSKTFLGVRFVLFGFDPLSETEVKSKLVNGGGVDAVQYSENCTHVIVDKIVYDDP 61

Query: 120 ICVAARSDGKTLVNGLWVAHSFDVGMAVDPNSVSY 16
           +CV AR+DGKT+V GLWV HSFD+GM VD  S+ Y
Sbjct: 62  VCVGARNDGKTVVRGLWVNHSFDIGMPVDATSIMY 96


>ref|XP_002515302.1| DNA replication regulator dpb11, putative [Ricinus communis]
           gi|223545782|gb|EEF47286.1| DNA replication regulator
           dpb11, putative [Ricinus communis]
          Length = 1069

 Score =  114 bits (284), Expect = 1e-23
 Identities = 54/90 (60%), Positives = 64/90 (71%)
 Frame = -1

Query: 285 PSKVFSDVRFVLLGFDPINKHMVLSKLXXXXXXXXGQYGPICTHVIVDKLLYDDPICVAA 106
           PSK F  VRFVL GFDPIN   V +KL        GQY   CTHVIVDK++Y+DPIC+AA
Sbjct: 6   PSKTFLGVRFVLFGFDPINLRQVRAKLIDGGGVDAGQYNENCTHVIVDKIVYNDPICIAA 65

Query: 105 RSDGKTLVNGLWVAHSFDVGMAVDPNSVSY 16
           R+D KTLV GLWV HS+D+G+ VD  S+ Y
Sbjct: 66  RNDRKTLVTGLWVDHSYDIGLVVDATSIMY 95


>ref|XP_002270203.2| PREDICTED: BRCT domain-containing protein At4g02110-like [Vitis
           vinifera]
          Length = 1314

 Score =  104 bits (259), Expect = 9e-21
 Identities = 51/93 (54%), Positives = 62/93 (66%)
 Frame = -1

Query: 294 YDRPSKVFSDVRFVLLGFDPINKHMVLSKLXXXXXXXXGQYGPICTHVIVDKLLYDDPIC 115
           ++     F  V FVL GFDP+++  V SKL        G+YG  CTHV+VDKL+YDDP+C
Sbjct: 4   FENSFNAFLGVHFVLFGFDPVHEREVRSKLVNGGGVDVGRYGQNCTHVVVDKLVYDDPVC 63

Query: 114 VAARSDGKTLVNGLWVAHSFDVGMAVDPNSVSY 16
           VAAR+DGK LV  LWV HSFD GM V P S+ Y
Sbjct: 64  VAARNDGKMLVTSLWVDHSFDTGMPV-PESIMY 95


>emb|CAN62071.1| hypothetical protein VITISV_036193 [Vitis vinifera]
          Length = 1391

 Score =  104 bits (259), Expect = 9e-21
 Identities = 51/93 (54%), Positives = 62/93 (66%)
 Frame = -1

Query: 294 YDRPSKVFSDVRFVLLGFDPINKHMVLSKLXXXXXXXXGQYGPICTHVIVDKLLYDDPIC 115
           ++     F  V FVL GFDP+++  V SKL        G+YG  CTHV+VDKL+YDDP+C
Sbjct: 4   FENSFNAFLGVHFVLFGFDPVHEREVRSKLVNGGGVDVGRYGQNCTHVVVDKLVYDDPVC 63

Query: 114 VAARSDGKTLVNGLWVAHSFDVGMAVDPNSVSY 16
           VAAR+DGK LV  LWV HSFD GM V P S+ Y
Sbjct: 64  VAARNDGKMLVTSLWVDHSFDTGMPV-PESIMY 95


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