BLASTX nr result

ID: Panax21_contig00033904 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00033904
         (565 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN77047.1| hypothetical protein VITISV_035258 [Vitis vinifera]   119   4e-25
ref|XP_002314443.1| predicted protein [Populus trichocarpa] gi|2...   115   5e-24
ref|XP_002329638.1| predicted protein [Populus trichocarpa] gi|2...   109   4e-22
ref|XP_002334157.1| predicted protein [Populus trichocarpa] gi|2...    97   1e-18
emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]    91   1e-16

>emb|CAN77047.1| hypothetical protein VITISV_035258 [Vitis vinifera]
          Length = 384

 Score =  119 bits (297), Expect = 4e-25
 Identities = 56/145 (38%), Positives = 94/145 (64%), Gaps = 8/145 (5%)
 Frame = -2

Query: 411 YDRGYDDDTRKIKVDAPEFDGRSDPNVFLDWLSIMDTFFD*YEMSDERRVRFAKMKLVKQ 232
           +++   D T+K++++ P+F+G+ D   F DWL+ ++ +FD Y+M D+RRVRFAKMKLV  
Sbjct: 88  FEKPAGDITKKVRMEVPDFEGKVDATQFXDWLAAIEEYFDWYDMXDDRRVRFAKMKLVGL 147

Query: 231 TNLYWASVERDIERLRDPPI--------RH*EYYLPIGHKDMMFEQ*TNLKQDNLYVSDY 76
           T ++W  VE DI R+  PPI        +  E Y+P  + D + +Q  NL+Q+N+ V++Y
Sbjct: 148 TKVWWTGVEGDIRRMGLPPISTWQEMKAKLREKYMPTNYYDKLCDQLINLRQNNMSVAEY 207

Query: 75  VNRYRELMERCELVEETRLTIIRFR 1
           +  + EL  R ++VE+ + T+ RF+
Sbjct: 208 MQTFDELKTRSQIVEDPQQTLARFK 232


>ref|XP_002314443.1| predicted protein [Populus trichocarpa] gi|222863483|gb|EEF00614.1|
           predicted protein [Populus trichocarpa]
          Length = 252

 Score =  115 bits (288), Expect = 5e-24
 Identities = 55/140 (39%), Positives = 88/140 (62%), Gaps = 8/140 (5%)
 Frame = -2

Query: 396 DDDTRKIKVDAPEFDGRSDPNVFLDWLSIMDTFFD*YEMSDERRVRFAKMKLVKQTNLYW 217
           D+ T+++KVD P+F G+ +P+ F DWL+ ++ +FD + +S+ER+VR+ +MKL     ++W
Sbjct: 99  DELTKRMKVDVPDFYGKLEPHAFEDWLTAIEDYFDWFAVSEERKVRYIRMKLKGHARVWW 158

Query: 216 ASVERDIERLRDPPIRH--------*EYYLPIGHKDMMFEQ*TNLKQDNLYVSDYVNRYR 61
            SVE  + R + PPI H         E YLPI ++ MMFE+   L+Q  L V  Y N++ 
Sbjct: 159 GSVEEQLRRTQRPPISHWEEMKERLKEKYLPIDYEQMMFEEMLQLRQGTLIVEQYTNKFH 218

Query: 60  ELMERCELVEETRLTIIRFR 1
           EL  R ++VE  + T+ R+R
Sbjct: 219 ELTVRSKIVEIDQQTLARYR 238


>ref|XP_002329638.1| predicted protein [Populus trichocarpa] gi|222870519|gb|EEF07650.1|
           predicted protein [Populus trichocarpa]
          Length = 363

 Score =  109 bits (272), Expect = 4e-22
 Identities = 52/140 (37%), Positives = 87/140 (62%), Gaps = 8/140 (5%)
 Frame = -2

Query: 396 DDDTRKIKVDAPEFDGRSDPNVFLDWLSIMDTFFD*YEMSDERRVRFAKMKLVKQTNLYW 217
           D+ T+++KVD P+F G+ +P+ F DWL+ ++ +FD + +S++R+VR+ +MKL     ++W
Sbjct: 110 DELTKRMKVDVPDFYGKLEPHAFEDWLTAIEDYFDWFAVSEDRKVRYIRMKLKGHARVWW 169

Query: 216 ASVERDIERLRDPPIRH--------*EYYLPIGHKDMMFEQ*TNLKQDNLYVSDYVNRYR 61
            SVE  + R + PPI +         E YLPI ++ MMFE+   L+Q +L V  Y +R+ 
Sbjct: 170 GSVEEQLRRTQRPPISNWEEMKEQLKEKYLPIDYEHMMFEEMLQLRQGSLTVDQYTDRFH 229

Query: 60  ELMERCELVEETRLTIIRFR 1
           EL  R  + E  + T+ R+R
Sbjct: 230 ELTVRSRIAETDQQTLARYR 249


>ref|XP_002334157.1| predicted protein [Populus trichocarpa] gi|222869685|gb|EEF06816.1|
           predicted protein [Populus trichocarpa]
          Length = 356

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 49/134 (36%), Positives = 80/134 (59%), Gaps = 8/134 (5%)
 Frame = -2

Query: 378 IKVDAPEFDGRSDPNVFLDWLSIMDTFFD*YEMSDERRVRFAKMKLVKQTNLYWASVERD 199
           +KV+  +F G+ +PN F DWL+ ++ +FD + +S++R+VR+ +MKL      +W SVE  
Sbjct: 1   MKVNVLDFFGKLEPNAFEDWLTAIEDYFDWFAVSEDRKVRYVRMKLKSHARAWWGSVEEQ 60

Query: 198 IERLRDPPI--------RH*EYYLPIGHKDMMFEQ*TNLKQDNLYVSDYVNRYRELMERC 43
           + R R P I        R  E YLPI ++ MMFE+   L+Q +L V  + + + EL  R 
Sbjct: 61  LRRTRRPTISNWEEMKERLKEKYLPIDYEQMMFEEMLQLRQGSLSVDQFTDCFHELTVRS 120

Query: 42  ELVEETRLTIIRFR 1
           ++VE  + T+ R+R
Sbjct: 121 KVVETEQQTLARYR 134


>emb|CAN79321.1| hypothetical protein VITISV_018984 [Vitis vinifera]
          Length = 1521

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 45/140 (32%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
 Frame = -2

Query: 396 DDDTRKIKVDAPEFDGRSDPNVFLDWLSIMDTFFD*YEMSDERRVRFAKMKLVKQTNLYW 217
           DD T+K++++  EF G+ +P  FLDW+  M+ +FD Y M + R+VRF K KL     L+W
Sbjct: 82  DDVTKKVRLEVAEFYGKLNPTAFLDWIMSMEDYFDWYAMPENRKVRFVKAKLKGAARLWW 141

Query: 216 ASVERDIERLRDPPI--------RH*EYYLPIGHKDMMFEQ*TNLKQDNLYVSDYVNRYR 61
            ++E    R   PPI        +  E++LP  ++ +M+ +  +LKQ    V +Y   + 
Sbjct: 142 HNIENQAHRTGQPPIDTWDEMKLKMKEHFLPTDYEQLMYTKLFSLKQGTKSVEEYTEEFH 201

Query: 60  ELMERCELVEETRLTIIRFR 1
           EL  R ++ E       R++
Sbjct: 202 ELSIRNQVXESDAQLAARYK 221


Top