BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00032403
         (498 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD22330.1| putative non-LTR retroelement reverse transcripta...    94   1e-17
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    81   8e-14
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    77   1e-12
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    76   2e-12
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]                76   3e-12

>gb|AAD22330.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 631

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 45/210 (21%)
 Frame = -3

Query: 496 IQWLKEGDRNIGFFHNQVKARWNQNKILSIAKSDG*LVSGQNKIQRVAVDYFHSILG-SP 320
           + W+K GDRN  +FH   + R  QN I  I   +  L+    +I+  AV +F   L   P
Sbjct: 7   LHWMKVGDRNNSYFHKAAQVRKMQNSIREIKGPNDVLLQTSEEIKGEAVRFFKEFLTHQP 66

Query: 319 S*ACSFDIRNLGGAVKNRVSSADASALDKDISNDDI------------------------ 212
           S      + +L   +  R S+ D   L ++++ ++I                        
Sbjct: 67  SDFQGMSVDDLRNLMSFRCSATDQDMLTREVTAEEIQKVLFAIPCNKSPGPDGYTTMLPS 126

Query: 211 --------------------LTQELFRNYHRNSGPSRISLKIDLHKAFESISWDFLWEAL 92
                               L  EL ++YH++S   R ++KID+ KAF+S+ W FL   L
Sbjct: 127 FILQNQSAFVKERLLMENVLLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTL 186

Query: 91  KVFNFPPKFVFWIKAFISSASYSVKINGGL 2
           +  NFP K   WIK  IS+A++SV++NG L
Sbjct: 187 EALNFPEKIRHWIKLCISTATFSVQVNGEL 216


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 37/88 (42%), Positives = 58/88 (65%)
 Frame = -3

Query: 265 VSSADASALDKDISNDDILTQELFRNYHRNSGPSRISLKIDLHKAFESISWDFLWEALKV 86
           V +  A   D+ +  + +L  E+ ++YH++S  SR +LKID+ KAF+S+ W FL   L+ 
Sbjct: 447 VGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEA 506

Query: 85  FNFPPKFVFWIKAFISSASYSVKINGGL 2
            NFPP+F  WI   I++AS+SV++NG L
Sbjct: 507 MNFPPEFTHWITLCITTASFSVQVNGEL 534


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 34/88 (38%), Positives = 57/88 (64%)
 Frame = -3

Query: 265 VSSADASALDKDISNDDILTQELFRNYHRNSGPSRISLKIDLHKAFESISWDFLWEALKV 86
           V +  A   D+ +  + +L  EL ++YH++S  +R ++KID+ KAF+S+ W FL   L  
Sbjct: 280 VGNQSAFVKDRLLIENVLLATELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVLAA 339

Query: 85  FNFPPKFVFWIKAFISSASYSVKINGGL 2
            NFP +F+ WI   +S+AS+S+++NG L
Sbjct: 340 MNFPGEFIHWISLCMSTASFSIQVNGEL 367


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 39/102 (38%), Positives = 59/102 (57%)
 Frame = -3

Query: 307  SFDIRNLGGAVKNRVSSADASALDKDISNDDILTQELFRNYHRNSGPSRISLKIDLHKAF 128
            SF ++N    VK R+           +  + +L  EL ++YH+ S   R ++KID+ KAF
Sbjct: 853  SFILQNQSAFVKERL-----------LMENVLLATELVKDYHKESVTPRCAMKIDISKAF 901

Query: 127  ESISWDFLWEALKVFNFPPKFVFWIKAFISSASYSVKINGGL 2
            +S+ W FL   L+  NFP  F  WIK  IS+A++SV++NG L
Sbjct: 902  DSVQWQFLLNTLEALNFPETFRHWIKLCISTATFSVQVNGEL 943


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 37/91 (40%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
 Frame = -3

Query: 268 RVSSADASALDKD--ISNDDILTQELFRNYHRNSGPSRISLKIDLHKAFESISWDFLWEA 95
           R  + + SA  KD  +  + +L  EL ++YH++S  +R ++KID+ KAF+S+ W FL   
Sbjct: 203 RFIAENQSAFVKDRLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNT 262

Query: 94  LKVFNFPPKFVFWIKAFISSASYSVKINGGL 2
           L   NF P F+ WI   I++AS+SV++NG L
Sbjct: 263 LVAMNFSPTFIHWINLCITTASFSVQVNGDL 293