BLASTX nr result
ID: Panax21_contig00028703
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00028703
(635 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containi... 149 3e-34
emb|CBI34116.3| unnamed protein product [Vitis vinifera] 121 9e-26
ref|XP_002525881.1| pentatricopeptide repeat-containing protein,... 121 1e-25
ref|XP_003525573.1| PREDICTED: pentatricopeptide repeat-containi... 120 2e-25
ref|XP_002514422.1| pentatricopeptide repeat-containing protein,... 114 1e-23
>ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
mitochondrial [Vitis vinifera]
Length = 817
Score = 149 bits (377), Expect = 3e-34
Identities = 69/107 (64%), Positives = 85/107 (79%)
Frame = -1
Query: 635 VFDNMVWRGLTPDVITYTIMLNGYCRLNCLKQACDLFNDMKRRGIKPDVITYTVLINGHS 456
VFD +V RG+TPDVITYT+M+NGYCR+NCL++A D+FNDMK RGIKPDVITYTV+++GHS
Sbjct: 630 VFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHS 689
Query: 455 KINLEKAIELYSEDGYKGETDGALTFWREMEEMGLNPDVKCYTALID 315
K+NL+ A L G + E A FW EM+EMG+ PDV CYT LID
Sbjct: 690 KVNLKMARSLQFSKGSEEEKMDASPFWSEMKEMGIKPDVVCYTVLID 736
Score = 66.2 bits (160), Expect = 5e-09
Identities = 30/97 (30%), Positives = 55/97 (56%)
Frame = -1
Query: 611 GLTPDVITYTIMLNGYCRLNCLKQACDLFNDMKRRGIKPDVITYTVLINGHSKINLEKAI 432
G+ PDV+ YT++++ +C+ N L+ A +L+++M RG++PD++TYT L++
Sbjct: 723 GIKPDVVCYTVLIDSHCKTNNLQDAINLYDEMIARGLQPDIVTYTALLSSCCS------- 775
Query: 431 ELYSEDGYKGETDGALTFWREMEEMGLNPDVKCYTAL 321
+G+ D A+T EM G+ PD + + L
Sbjct: 776 --------RGDMDRAITLVNEMSFKGIEPDSRAMSVL 804
Score = 64.7 bits (156), Expect = 1e-08
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Frame = -1
Query: 635 VFDNMVWRGLTPDVITYTIMLNGYCRLNCLKQACDLFNDMKRRGIKPDVITYTVLINGHS 456
+ + M R ++ DV+ YT ++ GYC L A ++F +MK RGI+PD++TY +L+ G S
Sbjct: 424 LLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFS 483
Query: 455 KINLEK-AIELYSEDGYKGETDGALTFWREMEEMGLNPDVK 336
+ L+K A+EL G +G + T R +E + + VK
Sbjct: 484 RNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVK 524
>emb|CBI34116.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 121 bits (304), Expect = 9e-26
Identities = 62/107 (57%), Positives = 76/107 (71%), Gaps = 1/107 (0%)
Frame = -1
Query: 635 VFDNMVWRGLTPDVITYTIMLNGYCRLNCLKQACDLFNDMKRRGIKPDVITYTVLINGHS 456
VFD +V RG+TPDVITYT+M+NGYCR+NCL++A D+FNDMK RGIKPDVITYTV+++GHS
Sbjct: 584 VFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHS 643
Query: 455 KI-NLEKAIELYSEDGYKGETDGALTFWREMEEMGLNPDVKCYTALI 318
K NL+ AI LY EM GL PD+ YTAL+
Sbjct: 644 KTNNLQDAINLYD----------------EMIARGLQPDIVTYTALL 674
Score = 66.6 bits (161), Expect = 4e-09
Identities = 27/58 (46%), Positives = 46/58 (79%)
Frame = -1
Query: 635 VFDNMVWRGLTPDVITYTIMLNGYCRLNCLKQACDLFNDMKRRGIKPDVITYTVLING 462
+F++M RG+ PDVITYT++L+G+ + N L+ A +L+++M RG++PD++TYT L+ G
Sbjct: 619 IFNDMKERGIKPDVITYTVVLDGHSKTNNLQDAINLYDEMIARGLQPDIVTYTALLPG 676
Score = 64.7 bits (156), Expect = 1e-08
Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Frame = -1
Query: 635 VFDNMVWRGLTPDVITYTIMLNGYCRLNCLKQACDLFNDMKRRGIKPDVITYTVLINGHS 456
+ + M R ++ DV+ YT ++ GYC L A ++F +MK RGI+PD++TY +L+ G S
Sbjct: 405 LLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFS 464
Query: 455 KINLEK-AIELYSEDGYKGETDGALTFWREMEEMGLNPDVK 336
+ L+K A+EL G +G + T R +E + + VK
Sbjct: 465 RNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVK 505
>ref|XP_002525881.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223534795|gb|EEF36485.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 913
Score = 121 bits (303), Expect = 1e-25
Identities = 55/107 (51%), Positives = 76/107 (71%)
Frame = -1
Query: 635 VFDNMVWRGLTPDVITYTIMLNGYCRLNCLKQACDLFNDMKRRGIKPDVITYTVLINGHS 456
VFD ++ RG TPD+I YTIM+ YCR+NCLK+A DLF+DMK+RGIKPD++T+TVL++GH
Sbjct: 638 VFDMLLKRGWTPDLIAYTIMITSYCRMNCLKEAVDLFHDMKQRGIKPDLVTFTVLLDGHH 697
Query: 455 KINLEKAIELYSEDGYKGETDGALTFWREMEEMGLNPDVKCYTALID 315
K +++K + G + AL W EM++ + PDV YT LID
Sbjct: 698 KAHIKKVYSAANAKGGNEDIFDALAIWTEMKDTEIKPDVIFYTVLID 744
Score = 69.3 bits (168), Expect = 6e-10
Identities = 32/97 (32%), Positives = 58/97 (59%)
Frame = -1
Query: 608 LTPDVITYTIMLNGYCRLNCLKQACDLFNDMKRRGIKPDVITYTVLINGHSKINLEKAIE 429
+ PDVI YT++++GYC+++ L A +F++M RG++PD+ITYT L++G +
Sbjct: 732 IKPDVIFYTVLIDGYCKVDSLHDAIGVFDEMIERGLEPDIITYTALLSGCCQ-------- 783
Query: 428 LYSEDGYKGETDGALTFWREMEEMGLNPDVKCYTALI 318
+G+ D A+ +M G++PD + +AL+
Sbjct: 784 -------RGDVDRAVNLLDQMSLKGISPDTRTMSALL 813
Score = 58.5 bits (140), Expect = 1e-06
Identities = 26/58 (44%), Positives = 39/58 (67%)
Frame = -1
Query: 635 VFDNMVWRGLTPDVITYTIMLNGYCRLNCLKQACDLFNDMKRRGIKPDVITYTVLING 462
VFD M+ RGL PD+ITYT +L+G C+ + +A +L + M +GI PD T + L++G
Sbjct: 758 VFDEMIERGLEPDIITYTALLSGCCQRGDVDRAVNLLDQMSLKGISPDTRTMSALLHG 815
>ref|XP_003525573.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
mitochondrial-like [Glycine max]
Length = 819
Score = 120 bits (302), Expect = 2e-25
Identities = 62/108 (57%), Positives = 77/108 (71%), Gaps = 1/108 (0%)
Frame = -1
Query: 635 VFDNMVWRGLTPDVITYTIMLNGYCRLNCLKQACDLFNDMKRRGIKPDVITYTVLINGHS 456
+FD V RG TPDV+TYTIM+N YCR+NCL++A DLF DMKRRGIKPDVIT+TVL++G
Sbjct: 633 LFDVFVHRGFTPDVVTYTIMINSYCRMNCLQEAHDLFQDMKRRGIKPDVITFTVLLDGSL 692
Query: 455 KINLEKAIELYSEDGYKGETD-GALTFWREMEEMGLNPDVKCYTALID 315
K L K +S G + T T R+ME+M +NPDV CYT L+D
Sbjct: 693 KEYLGKR---FSSHGKRKTTSLYVSTILRDMEQMKINPDVVCYTVLMD 737
Score = 62.4 bits (150), Expect = 7e-08
Identities = 31/96 (32%), Positives = 51/96 (53%)
Frame = -1
Query: 608 LTPDVITYTIMLNGYCRLNCLKQACDLFNDMKRRGIKPDVITYTVLINGHSKINLEKAIE 429
+ PDV+ YT++++G+ + + +QA LF+ M G++PD ITYT L++G
Sbjct: 725 INPDVVCYTVLMDGHMKTDNFQQAVSLFDKMIESGLEPDTITYTALVSGLCN-------- 776
Query: 428 LYSEDGYKGETDGALTFWREMEEMGLNPDVKCYTAL 321
+G + A+T EM G+ PDV +AL
Sbjct: 777 -------RGHVEKAVTLLNEMSSKGMTPDVHIISAL 805
Score = 57.8 bits (138), Expect = 2e-06
Identities = 35/105 (33%), Positives = 53/105 (50%)
Frame = -1
Query: 629 DNMVWRGLTPDVITYTIMLNGYCRLNCLKQACDLFNDMKRRGIKPDVITYTVLINGHSKI 450
+ M + L DV YT ++NGYC L A ++F +MK +G+KPD++TY VL G
Sbjct: 429 EEMKSKRLGLDVKHYTTLINGYCLQGDLVTAFNMFKEMKEKGLKPDIVTYNVLAAG---- 484
Query: 449 NLEKAIELYSEDGYKGETDGALTFWREMEEMGLNPDVKCYTALID 315
S +G+ ET L F ME G+ P+ + +I+
Sbjct: 485 --------LSRNGHARETVKLLDF---MESQGMKPNSTTHKMIIE 518
>ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223546418|gb|EEF47918.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 809
Score = 114 bits (286), Expect = 1e-23
Identities = 57/107 (53%), Positives = 71/107 (66%)
Frame = -1
Query: 635 VFDNMVWRGLTPDVITYTIMLNGYCRLNCLKQACDLFNDMKRRGIKPDVITYTVLINGHS 456
VF+ +V RGL PDVITYTIM+NGYCR+N +K+A + DMK RGI+PDVITYTVL+N S
Sbjct: 622 VFNMLVDRGLAPDVITYTIMINGYCRMNKMKEAWHVLGDMKNRGIEPDVITYTVLLNNCS 681
Query: 455 KINLEKAIELYSEDGYKGETDGALTFWREMEEMGLNPDVKCYTALID 315
KI+L + K W EM++M + PDV CYT LID
Sbjct: 682 KIDLRSSSSSLDAMKSKENMMDPSALWSEMKDMDIKPDVICYTVLID 728
Score = 67.0 bits (162), Expect = 3e-09
Identities = 29/70 (41%), Positives = 50/70 (71%), Gaps = 1/70 (1%)
Frame = -1
Query: 608 LTPDVITYTIMLNGYCRLNCLKQACDLFNDMKRRGIKPDVITYTVLINGHSKI-NLEKAI 432
+ PDVI YT++++ +C+ N ++ A +LFN+M RG+ PD +TYT L++G+ + N++KA+
Sbjct: 716 IKPDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYCNVGNIKKAV 775
Query: 431 ELYSEDGYKG 402
L+ E KG
Sbjct: 776 VLFDEMLNKG 785
Score = 61.2 bits (147), Expect = 2e-07
Identities = 26/55 (47%), Positives = 40/55 (72%)
Frame = -1
Query: 635 VFDNMVWRGLTPDVITYTIMLNGYCRLNCLKQACDLFNDMKRRGIKPDVITYTVL 471
+F+ M+ RGL PD +TYT +L+GYC + +K+A LF++M +GI+PD T +VL
Sbjct: 742 LFNEMIDRGLAPDTVTYTALLSGYCNVGNIKKAVVLFDEMLNKGIRPDAHTMSVL 796
Score = 60.1 bits (144), Expect = 3e-07
Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 20/118 (16%)
Frame = -1
Query: 611 GLTPDVITYTIMLNGYCRLNCLKQACDLFNDMKRRGIKPDVITYTVLING---HSK---- 453
GL P+ TYTI + G+CR L +A D+F DM+ G+ P+ +YT I G H +
Sbjct: 214 GLNPNDYTYTIAIKGFCRKGNLAEAIDVFRDMEESGVTPNSFSYTTFIEGLCLHGRSDLG 273
Query: 452 -------INLEKAIELYSED----GYKGE--TDGALTFWREMEEMGLNPDVKCYTALI 318
IN + +++++ G+ E A + REME+ G PDV Y ALI
Sbjct: 274 FKVLQDVINAKIPMDVFAYTVVIRGFCSEMKLKEAESILREMEKQGFAPDVYVYCALI 331
Score = 56.6 bits (135), Expect = 4e-06
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Frame = -1
Query: 635 VFDNMVWRGLTPDVITYTIMLNGYCRLNCLKQACDLFNDMKRRGIKPDVITYTVLINGHS 456
V +++ + DV YT+++ G+C LK+A + +M+++G PDV Y LI+G+
Sbjct: 276 VLQDVINAKIPMDVFAYTVVIRGFCSEMKLKEAESILREMEKQGFAPDVYVYCALISGYC 335
Query: 455 KI-NLEKAIELYSEDGYKGETDGALTF-------------------WREMEEMGLNPDVK 336
+ NL KA+ L+ E KG + ++E ++MG+ D
Sbjct: 336 MVGNLLKALALHDEMVSKGVKTNCVILSSILQGLSQMGMASEVANQFKEFKKMGIFFDEA 395
Query: 335 CYTALID 315
CY ++D
Sbjct: 396 CYNVVMD 402
Score = 56.2 bits (134), Expect = 5e-06
Identities = 31/103 (30%), Positives = 50/103 (48%)
Frame = -1
Query: 623 MVWRGLTPDVITYTIMLNGYCRLNCLKQACDLFNDMKRRGIKPDVITYTVLINGHSKINL 444
M + + PD+I YT +++GY + A +++ +MK G KPD++TY VL G S+
Sbjct: 420 MKGKKMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSR--- 476
Query: 443 EKAIELYSEDGYKGETDGALTFWREMEEMGLNPDVKCYTALID 315
G T AL+ ME G+ PD + +I+
Sbjct: 477 ------------NGLTQEALSLLNYMETQGVKPDTVTHNMIIE 507