BLASTX nr result

ID: Panax21_contig00028602 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00028602
         (476 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...   102   3e-20
ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|2...    75   7e-12
ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|2...    71   1e-10
ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|2...    70   2e-10
ref|XP_004169944.1| PREDICTED: putative ribonuclease H protein A...    65   6e-09

>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score =  102 bits (254), Expect = 3e-20
 Identities = 52/143 (36%), Positives = 83/143 (58%), Gaps = 2/143 (1%)
 Frame = -1

Query: 473 GLKSIIEWNKSLIMMHLLNIIRVDSSSLWAN*IITTVLKGRNLWNYQAPSDFSWI*KQVL 294
           G+KSI EWNK  ++ H+ N+      S+W+  I + +L+GRN W  + P + SW   ++L
Sbjct: 162 GIKSIKEWNKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFWTIKTPQNCSWAWGKIL 221

Query: 293 KLRQTA*NHVSYIVGNGSNTSLWFDPWINGNPI--NHSKTLLANSGLSAKATVADIIFNS 120
           KLR  A   + YI+G+G  TSLWFD W   +P+  ++ +  + +SG++  A V  +I NS
Sbjct: 222 KLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDSGMAKNAKVNVLIQNS 281

Query: 119 SWFLPSS*HHEMIELRSLIEAQP 51
            W  P++   + I    +IEA P
Sbjct: 282 EWKTPTT---QAIGWHPIIEAIP 301


>ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|222874875|gb|EEF12006.1|
            predicted protein [Populus trichocarpa]
          Length = 1386

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 2/109 (1%)
 Frame = -1

Query: 371  TTVLKGRNLWNYQAPSDFSWI*KQVLKLRQTA*NHVSYIVGNGSNTSLWFDPWINGNPI- 195
            + +L+GRN W  + P + SW   ++LKLR  A   + YI+G+G  TSLWFD W   +P+ 
Sbjct: 1069 SNLLRGRNFWTIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLA 1128

Query: 194  -NHSKTLLANSGLSAKATVADIIFNSSWFLPSS*HHEMIELRSLIEAQP 51
             ++ +  + +SG++  A V  +I NS W  P++   + I    +IEA P
Sbjct: 1129 DSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTT---QAIGWHPIIEAIP 1174


>ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|222870351|gb|EEF07482.1|
            predicted protein [Populus trichocarpa]
          Length = 1046

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
 Frame = -1

Query: 374  ITTVLKGRNLWNYQAPSDFSWI*KQVLKLRQTA*NHVSYIVGNGSNTSLWFDPWINGNPI 195
            I+ +L+GRN W  + P + S    ++LKLR  A   + YI+G+G  TSLWFD W   +P+
Sbjct: 728  ISNLLRGRNFWTIKTPQNCSSAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPL 787

Query: 194  --NHSKTLLANSGLSAKATVADIIFNSSWFLPSS*HHEMIELRSLIEAQP 51
              ++ +  + +SG++  A V  +I NS W  P++   + I    +IEA P
Sbjct: 788  ADSYGERFIYDSGMAKNAKVNVLIQNSEWKTPTT---QAIGWHPIIEAIP 834


>ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|222849970|gb|EEE87517.1|
           predicted protein [Populus trichocarpa]
          Length = 331

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
 Frame = -1

Query: 365 VLKGRNLWNYQAPSDFSWI*KQVLKLRQTA*NHVSYIVGNGSNTSLWFDPWINGNPI--N 192
           ++  RN W  + P + SW   ++LKLR  A   + YI+G+G  TSLWFD W   +P+  +
Sbjct: 16  IVISRNFWTIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADS 75

Query: 191 HSKTLLANSGLSAKATVADIIFNSSWFLPSS*HHEMIELRSLIEAQP 51
           + +  + +SG++  A V  +I NS W  P++   + I    +IEA P
Sbjct: 76  YGERFIYDSGMAKNAKVNVLIQNSEWKTPTT---QAIGWHPIIEAIP 119


>ref|XP_004169944.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Cucumis
           sativus]
          Length = 265

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
 Frame = -1

Query: 431 MHLLNIIRVDSSSLWAN*IITTVLKGRNLWNYQAPSDFSWI*KQVLKLRQTA*NHVSYIV 252
           + +L ++ V S SLW   +   +LKGR+LW        SW  + +L+ R+    HV+  V
Sbjct: 158 LKILWLLLVKSGSLWVAWVEAYILKGRSLWEIDVGVGRSWCFRAILRKREILEAHVNIEV 217

Query: 251 GNGSNTSLWFDPWINGNPI--NHSKTLLANSGLSAKATVADII 129
           GNG    +W DPWI G PI     ++++ ++G    A + D +
Sbjct: 218 GNGKKCRVWLDPWIQGGPIIQQFGESVIYDAGSRWDARLVDFM 260


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