BLASTX nr result
ID: Panax21_contig00028115
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00028115
(1247 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago t... 269 1e-69
ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containi... 221 3e-55
emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera] 221 3e-55
ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containi... 216 7e-54
ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containi... 216 7e-54
>ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355501015|gb|AES82218.1| Pentatricopeptide repeat
protein [Medicago truncatula]
Length = 607
Score = 269 bits (688), Expect = 1e-69
Identities = 129/197 (65%), Positives = 155/197 (78%)
Frame = +1
Query: 1 LVDMYAKCGDIEAAYCIFESMPKKNIVSWNSIIGGYARHGLATRALEVFQRMKNSGVKPD 180
LVDMYAKCGD++AA+ +FES+ KN+VSWN+IIGGYA HGLATRALE F RMK G PD
Sbjct: 310 LVDMYAKCGDMDAAFGVFESIRDKNLVSWNAIIGGYASHGLATRALEEFDRMKVVGT-PD 368
Query: 181 KITFINVLSACGHGGLVEEGERQFNSMGMKYRIQVEMEHYACMVDLFGRAGQLEKAEKLI 360
++TF+NVLSAC H GLVEEGE+ F M KY IQ EMEHY+CMVDL+GRAG+ ++AE LI
Sbjct: 369 EVTFVNVLSACVHAGLVEEGEKHFTDMLTKYGIQAEMEHYSCMVDLYGRAGRFDEAENLI 428
Query: 361 DEMPFEPDAVVWGAFLGACGLHSSLELGEFTVKRLNSLEQDSPAVYSMLSKIHGEKGVWN 540
MPFEPD V+WGA L ACGLHS+LELGE+ +R+ LE P YS+LSKI GEKGVW+
Sbjct: 429 KNMPFEPDVVLWGALLAACGLHSNLELGEYAAERIRRLESSHPVSYSVLSKIQGEKGVWS 488
Query: 541 SVIEVRKMMNQKRAKKQ 591
SV E+R M ++ KKQ
Sbjct: 489 SVNELRDTMKERGIKKQ 505
Score = 65.1 bits (157), Expect = 4e-08
Identities = 38/142 (26%), Positives = 72/142 (50%)
Frame = +1
Query: 1 LVDMYAKCGDIEAAYCIFESMPKKNIVSWNSIIGGYARHGLATRALEVFQRMKNSGVKPD 180
LV+ Y K + A +F+ M ++N+VSW ++I GY ++ AL++F M + +P+
Sbjct: 209 LVNGYVKNKQVNKARSVFDDMSERNVVSWTAMISGYVQNKRFVDALKLFVLMFKTETRPN 268
Query: 181 KITFINVLSACGHGGLVEEGERQFNSMGMKYRIQVEMEHYACMVDLFGRAGQLEKAEKLI 360
TF +VL AC + G Q + +K I ++ +VD++ + G ++ A +
Sbjct: 269 HFTFSSVLDACAGSSSLIMG-LQLHPCIIKSGIANDVIWLTSLVDMYAKCGDMDAAFGVF 327
Query: 361 DEMPFEPDAVVWGAFLGACGLH 426
+ + + + V W A +G H
Sbjct: 328 ESIR-DKNLVSWNAIIGGYASH 348
>ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
Length = 758
Score = 221 bits (563), Expect = 3e-55
Identities = 105/204 (51%), Positives = 134/204 (65%)
Frame = +1
Query: 1 LVDMYAKCGDIEAAYCIFESMPKKNIVSWNSIIGGYARHGLATRALEVFQRMKNSGVKPD 180
L+DMYAKCG I+A+ F+ +P KN+V WN++I GYA HG A A+E+F M+ SG KPD
Sbjct: 427 LIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPD 486
Query: 181 KITFINVLSACGHGGLVEEGERQFNSMGMKYRIQVEMEHYACMVDLFGRAGQLEKAEKLI 360
I+F VLSAC GL EEG FNSM KY I+ +EHYACMV L RAG+LE+A +I
Sbjct: 487 IISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMI 546
Query: 361 DEMPFEPDAVVWGAFLGACGLHSSLELGEFTVKRLNSLEQDSPAVYSMLSKIHGEKGVWN 540
MP PDA VWGA L +C +H+++ LGE ++L LE +P Y +LS I+ KG+WN
Sbjct: 547 RRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWN 606
Query: 541 SVIEVRKMMNQKRAKKQKAVSWIE 612
V VR MM K +K SWIE
Sbjct: 607 EVNRVRDMMKNKGLRKNPGCSWIE 630
Score = 68.2 bits (165), Expect = 4e-09
Identities = 31/90 (34%), Positives = 52/90 (57%)
Frame = +1
Query: 1 LVDMYAKCGDIEAAYCIFESMPKKNIVSWNSIIGGYARHGLATRALEVFQRMKNSGVKPD 180
LV MY KC I A+ +F+ M + ++VSW++++ YAR G A +F M +SGV+P+
Sbjct: 155 LVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPN 214
Query: 181 KITFINVLSACGHGGLVEEGERQFNSMGMK 270
I++ +++ H GL E F M ++
Sbjct: 215 LISWNGMIAGFNHSGLYSEAVLMFLDMHLR 244
Score = 63.9 bits (154), Expect = 8e-08
Identities = 34/138 (24%), Positives = 75/138 (54%), Gaps = 4/138 (2%)
Frame = +1
Query: 25 GDIEAAYCIFESMPKK----NIVSWNSIIGGYARHGLATRALEVFQRMKNSGVKPDKITF 192
G +E++ +F + + N+VSW S+I +++G ALE+F+ M+ +GVKP+ +T
Sbjct: 330 GQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTI 389
Query: 193 INVLSACGHGGLVEEGERQFNSMGMKYRIQVEMEHYACMVDLFGRAGQLEKAEKLIDEMP 372
+L ACG+ + G + + ++ I ++ + ++D++ + G+++ + D +P
Sbjct: 390 PCLLPACGNIAALMHG-KAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIP 448
Query: 373 FEPDAVVWGAFLGACGLH 426
+ + V W A + +H
Sbjct: 449 TK-NLVCWNAVIAGYAMH 465
>emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
Length = 760
Score = 221 bits (563), Expect = 3e-55
Identities = 105/204 (51%), Positives = 134/204 (65%)
Frame = +1
Query: 1 LVDMYAKCGDIEAAYCIFESMPKKNIVSWNSIIGGYARHGLATRALEVFQRMKNSGVKPD 180
L+DMYAKCG I+A+ F+ +P KN+V WN++I GYA HG A A+E+F M+ SG KPD
Sbjct: 427 LIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPD 486
Query: 181 KITFINVLSACGHGGLVEEGERQFNSMGMKYRIQVEMEHYACMVDLFGRAGQLEKAEKLI 360
I+F VLSAC GL EEG FNSM KY I+ +EHYACMV L RAG+LE+A +I
Sbjct: 487 IISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMI 546
Query: 361 DEMPFEPDAVVWGAFLGACGLHSSLELGEFTVKRLNSLEQDSPAVYSMLSKIHGEKGVWN 540
MP PDA VWGA L +C +H+++ LGE ++L LE +P Y +LS I+ KG+WN
Sbjct: 547 RRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWN 606
Query: 541 SVIEVRKMMNQKRAKKQKAVSWIE 612
V VR MM K +K SWIE
Sbjct: 607 EVNRVRDMMKNKGLRKNPGCSWIE 630
Score = 68.2 bits (165), Expect = 4e-09
Identities = 31/90 (34%), Positives = 52/90 (57%)
Frame = +1
Query: 1 LVDMYAKCGDIEAAYCIFESMPKKNIVSWNSIIGGYARHGLATRALEVFQRMKNSGVKPD 180
LV MY KC I A+ +F+ M + ++VSW++++ YAR G A +F M +SGV+P+
Sbjct: 155 LVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPN 214
Query: 181 KITFINVLSACGHGGLVEEGERQFNSMGMK 270
I++ +++ H GL E F M ++
Sbjct: 215 LISWNGMIAGFNHSGLYSEAVLMFLDMHLR 244
Score = 63.9 bits (154), Expect = 8e-08
Identities = 34/138 (24%), Positives = 75/138 (54%), Gaps = 4/138 (2%)
Frame = +1
Query: 25 GDIEAAYCIFESMPKK----NIVSWNSIIGGYARHGLATRALEVFQRMKNSGVKPDKITF 192
G +E++ +F + + N+VSW S+I +++G ALE+F+ M+ +GVKP+ +T
Sbjct: 330 GQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTI 389
Query: 193 INVLSACGHGGLVEEGERQFNSMGMKYRIQVEMEHYACMVDLFGRAGQLEKAEKLIDEMP 372
+L ACG+ + G + + ++ I ++ + ++D++ + G+++ + D +P
Sbjct: 390 PCLLPACGNIAALMHG-KAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIP 448
Query: 373 FEPDAVVWGAFLGACGLH 426
+ + V W A + +H
Sbjct: 449 TK-NLVCWNAVIAGYAMH 465
>ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 809
Score = 216 bits (551), Expect = 7e-54
Identities = 96/204 (47%), Positives = 138/204 (67%)
Frame = +1
Query: 1 LVDMYAKCGDIEAAYCIFESMPKKNIVSWNSIIGGYARHGLATRALEVFQRMKNSGVKPD 180
L+ MY++CG+IEAA+ +F M +N++SW S+I G+A+HG ATRALE+F +M +G KP+
Sbjct: 478 LISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPN 537
Query: 181 KITFINVLSACGHGGLVEEGERQFNSMGMKYRIQVEMEHYACMVDLFGRAGQLEKAEKLI 360
+IT++ VLSAC H G++ EG++ FNSM ++ I MEHYACMVDL GR+G L +A + I
Sbjct: 538 EITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFI 597
Query: 361 DEMPFEPDAVVWGAFLGACGLHSSLELGEFTVKRLNSLEQDSPAVYSMLSKIHGEKGVWN 540
+ MP DA+VW LGAC +H + ELG + + E D PA Y +LS +H G W
Sbjct: 598 NSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWK 657
Query: 541 SVIEVRKMMNQKRAKKQKAVSWIE 612
V+++RK M ++ K+ SWIE
Sbjct: 658 DVVKIRKSMKERNLIKEAGCSWIE 681
Score = 82.8 bits (203), Expect = 2e-13
Identities = 46/142 (32%), Positives = 88/142 (61%), Gaps = 4/142 (2%)
Frame = +1
Query: 1 LVDMYAK-CGDIEAAYCIFESMPKKNIVSWNSIIGGYARHGLATRALEVFQRMKNSGVKP 177
L+DM+ K GD+ +AY +F+ MP++N+V+W +I +A+ G A A+++F M+ SG P
Sbjct: 170 LIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVP 229
Query: 178 DKITFINVLSACGHGGLVEEGERQFNSMGMKYRIQVEMEHYACMVDLFGRA---GQLEKA 348
D+ T+ +VLSAC GL+ G +Q +S ++ + +++ +VD++ + G ++ +
Sbjct: 230 DRFTYSSVLSACTELGLLALG-KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDS 288
Query: 349 EKLIDEMPFEPDAVVWGAFLGA 414
K+ ++MP E + + W A + A
Sbjct: 289 RKVFEQMP-EHNVMSWTAIITA 309
Score = 77.4 bits (189), Expect = 7e-12
Identities = 45/144 (31%), Positives = 83/144 (57%), Gaps = 8/144 (5%)
Frame = +1
Query: 1 LVDMYAKC---GDIEAAYCIFESMPKKNIVSWNSIIGGYARHGLATR-ALEVFQRMKNSG 168
LVDMYAKC G ++ + +FE MP+ N++SW +II Y + G + A+E+F +M +
Sbjct: 272 LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGH 331
Query: 169 VKPDKITFINVLSACGHGGLVEEGERQFNSMGMKYRIQVEMEHYAC----MVDLFGRAGQ 336
++P+ +F +VL ACG+ GE+ ++ Y +++ + C ++ ++ R+G+
Sbjct: 332 IRPNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKLGIASVNCVGNSLISMYARSGR 386
Query: 337 LEKAEKLIDEMPFEPDAVVWGAFL 408
+E A K D + FE + V + A +
Sbjct: 387 MEDARKAFDIL-FEKNLVSYNAIV 409
Score = 67.8 bits (164), Expect = 6e-09
Identities = 40/134 (29%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Frame = +1
Query: 1 LVDMYAKCGDIEAAYCIFESM-PKKNIVSWNSIIGGYARHGLATRALEVFQRMKNSGVKP 177
L+ +Y+KCGD E A IFE M K+++VSW++++ +A + + +A+ F M G P
Sbjct: 67 LISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYP 126
Query: 178 DKITFINVLSACGHGGLVEEGERQFNSMGMKYRIQVEMEHYACMVDLFGR-AGQLEKAEK 354
++ F V+ AC + GE + + ++ ++ ++D+F + +G L A K
Sbjct: 127 NEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYK 186
Query: 355 LIDEMPFEPDAVVW 396
+ D+MP E + V W
Sbjct: 187 VFDKMP-ERNLVTW 199
Score = 62.8 bits (151), Expect = 2e-07
Identities = 37/142 (26%), Positives = 75/142 (52%)
Frame = +1
Query: 1 LVDMYAKCGDIEAAYCIFESMPKKNIVSWNSIIGGYARHGLATRALEVFQRMKNSGVKPD 180
L+ MYA+ G +E A F+ + +KN+VS+N+I+ GYA++ + A +F + ++G+
Sbjct: 377 LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 436
Query: 181 KITFINVLSACGHGGLVEEGERQFNSMGMKYRIQVEMEHYACMVDLFGRAGQLEKAEKLI 360
TF ++LS G + +GE Q + +K + ++ ++ R G +E A ++
Sbjct: 437 AFTFASLLSGAASIGAMGKGE-QIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVF 495
Query: 361 DEMPFEPDAVVWGAFLGACGLH 426
+EM + + + W + + H
Sbjct: 496 NEME-DRNVISWTSMITGFAKH 516
>ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 629
Score = 216 bits (551), Expect = 7e-54
Identities = 96/204 (47%), Positives = 138/204 (67%)
Frame = +1
Query: 1 LVDMYAKCGDIEAAYCIFESMPKKNIVSWNSIIGGYARHGLATRALEVFQRMKNSGVKPD 180
L+ MY++CG+IEAA+ +F M +N++SW S+I G+A+HG ATRALE+F +M +G KP+
Sbjct: 298 LISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPN 357
Query: 181 KITFINVLSACGHGGLVEEGERQFNSMGMKYRIQVEMEHYACMVDLFGRAGQLEKAEKLI 360
+IT++ VLSAC H G++ EG++ FNSM ++ I MEHYACMVDL GR+G L +A + I
Sbjct: 358 EITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFI 417
Query: 361 DEMPFEPDAVVWGAFLGACGLHSSLELGEFTVKRLNSLEQDSPAVYSMLSKIHGEKGVWN 540
+ MP DA+VW LGAC +H + ELG + + E D PA Y +LS +H G W
Sbjct: 418 NSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWK 477
Query: 541 SVIEVRKMMNQKRAKKQKAVSWIE 612
V+++RK M ++ K+ SWIE
Sbjct: 478 DVVKIRKSMKERNLIKEAGCSWIE 501
Score = 79.0 bits (193), Expect = 2e-12
Identities = 46/144 (31%), Positives = 84/144 (58%), Gaps = 8/144 (5%)
Frame = +1
Query: 1 LVDMYAKC---GDIEAAYCIFESMPKKNIVSWNSIIGGYARHGLATR-ALEVFQRMKNSG 168
LVDMYAKC G ++ + +FE MP+ N++SW +II YA+ G + A+E+F +M +
Sbjct: 92 LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGH 151
Query: 169 VKPDKITFINVLSACGHGGLVEEGERQFNSMGMKYRIQVEMEHYAC----MVDLFGRAGQ 336
++P+ +F +VL ACG+ GE+ ++ Y +++ + C ++ ++ R+G+
Sbjct: 152 IRPNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKLGIASVNCVGNSLISMYARSGR 206
Query: 337 LEKAEKLIDEMPFEPDAVVWGAFL 408
+E A K D + FE + V + A +
Sbjct: 207 MEDARKAFDIL-FEKNLVSYNAIV 229
Score = 72.8 bits (177), Expect = 2e-10
Identities = 40/128 (31%), Positives = 78/128 (60%), Gaps = 3/128 (2%)
Frame = +1
Query: 40 AYCIFESMPKKNIVSWNSIIGGYARHGLATRALEVFQRMKNSGVKPDKITFINVLSACGH 219
AY +F+ MP++N+V+W +I +A+ G A A+++F M+ SG PD+ T+ +VLSAC
Sbjct: 4 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63
Query: 220 GGLVEEGERQFNSMGMKYRIQVEMEHYACMVDLFGRA---GQLEKAEKLIDEMPFEPDAV 390
GL+ G +Q +S ++ + +++ +VD++ + G ++ + K+ ++MP E + +
Sbjct: 64 LGLLALG-KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMP-EHNVM 121
Query: 391 VWGAFLGA 414
W A + A
Sbjct: 122 SWTAIITA 129
Score = 62.8 bits (151), Expect = 2e-07
Identities = 37/142 (26%), Positives = 75/142 (52%)
Frame = +1
Query: 1 LVDMYAKCGDIEAAYCIFESMPKKNIVSWNSIIGGYARHGLATRALEVFQRMKNSGVKPD 180
L+ MYA+ G +E A F+ + +KN+VS+N+I+ GYA++ + A +F + ++G+
Sbjct: 197 LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 256
Query: 181 KITFINVLSACGHGGLVEEGERQFNSMGMKYRIQVEMEHYACMVDLFGRAGQLEKAEKLI 360
TF ++LS G + +GE Q + +K + ++ ++ R G +E A ++
Sbjct: 257 AFTFASLLSGAASIGAMGKGE-QIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVF 315
Query: 361 DEMPFEPDAVVWGAFLGACGLH 426
+EM + + + W + + H
Sbjct: 316 NEME-DRNVISWTSMITGFAKH 336