BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00027676
         (963 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   465   e-129
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   458   e-127
ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocar...   456   e-126
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...   453   e-125
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   447   e-123

>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
           sativus]
          Length = 1959

 Score =  465 bits (1196), Expect = e-129
 Identities = 224/321 (69%), Positives = 262/321 (81%), Gaps = 3/321 (0%)
 Frame = +2

Query: 2   IRFGLANRQEICTSSNSDCPISHASQLSNPFLGLPLESGKCESCGTAEPGECEGHFGYIE 181
           IRF LAN QEIC ++ SDCPI+HASQLSNPFLGLP+E GKCESCGT+EPG+CEGHFGYIE
Sbjct: 18  IRFSLANGQEICIAAISDCPITHASQLSNPFLGLPIEFGKCESCGTSEPGKCEGHFGYIE 77

Query: 182 LPIPIYHPSHVSEXXXXXXXXXXXXXXXXXXXIQVKNVGVAERVLSMCCEEASQISISEA 361
           LPIPIYHP+H++E                    + KN+G AER+LS CCE+ASQ++I EA
Sbjct: 78  LPIPIYHPNHITELKKMLSLLCLKCLKMK----KTKNIGFAERLLSSCCEDASQVTIREA 133

Query: 362 KSADGACYLELKIPSRSHIS---WNFLERYGFRYGDGCCRALLPSEVMVILRKIPEETRK 532
           K ADGA YL+LK+PSR+ +    W+FLERYGFRYGD   R LLP EV  +L+KIP ETRK
Sbjct: 134 KKADGASYLQLKVPSRTSLQERFWDFLERYGFRYGDNFTRTLLPCEVKEMLKKIPNETRK 193

Query: 533 KLAGKGFFPQDGYILQYLPVPPNCLSVPDISDGTSVMSSDHSIAVLKKVLKQIEIIKSSR 712
           KLAG+G++PQDGYILQYLPVPPNCLSVP+ISDG +VMSSD ++++LKK+LKQ+EIIK SR
Sbjct: 194 KLAGRGYYPQDGYILQYLPVPPNCLSVPEISDGVTVMSSDPAVSMLKKILKQVEIIKGSR 253

Query: 713 SGTPNFESHEIEANDLQAAVAQYLQVRGTAKASRDVDGRFGIKREPNGSSTKVWLEKMRT 892
           SG PNFESHE+EANDLQ AV QYLQVRGT KASR +D RFG+ +E N  STK WLEKMRT
Sbjct: 254 SGAPNFESHEVEANDLQLAVDQYLQVRGTVKASRGIDARFGVNKELNDPSTKAWLEKMRT 313

Query: 893 LFIRKGSGFSSRSIITGDPYK 955
           LFIRKGSGFSSRS+ITGD YK
Sbjct: 314 LFIRKGSGFSSRSVITGDAYK 334


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  458 bits (1179), Expect = e-127
 Identities = 225/323 (69%), Positives = 260/323 (80%), Gaps = 3/323 (0%)
 Frame = +2

Query: 2   IRFGLANRQEICTSSNSDCPISHASQLSNPFLGLPLESGKCESCGTAEPGECEGHFGYIE 181
           IRFGLA RQEIC +S SDCPISHASQL+NPFLGLPLE GKCESCGTAEPG+CEGHFGYIE
Sbjct: 16  IRFGLATRQEICIASVSDCPISHASQLTNPFLGLPLEFGKCESCGTAEPGQCEGHFGYIE 75

Query: 182 LPIPIYHPSHVSEXXXXXXXXXXXXXXXXXXXIQVKNVGVAERVLSMCCEEASQISISEA 361
           LPIPIYHP HVSE                    +V N G+ E++L+ CC+++ Q+S+ E 
Sbjct: 76  LPIPIYHPGHVSELKRMLSLLCLKCLKIRKS--KVTNNGITEQLLAPCCQDSPQVSVREF 133

Query: 362 KSADGACYLELKIPSRSHIS---WNFLERYGFRYGDGCCRALLPSEVMVILRKIPEETRK 532
           +  +GAC+LELKIPSRS      W+FL RYG+RYG    R LLPSEVM ILR+IPE+TRK
Sbjct: 134 RPTEGACFLELKIPSRSRPKDGFWDFLARYGYRYGHNLSRILLPSEVMEILRRIPEDTRK 193

Query: 533 KLAGKGFFPQDGYILQYLPVPPNCLSVPDISDGTSVMSSDHSIAVLKKVLKQIEIIKSSR 712
           KL  KG+FPQDGYILQYLPVPPNCLSVPDISDG S+MSSD S+++LKKVLKQIE+IK SR
Sbjct: 194 KLVRKGYFPQDGYILQYLPVPPNCLSVPDISDGVSIMSSDLSVSMLKKVLKQIEVIKGSR 253

Query: 713 SGTPNFESHEIEANDLQAAVAQYLQVRGTAKASRDVDGRFGIKREPNGSSTKVWLEKMRT 892
           SG PNFESH+IEAN+LQ+++ QYL+VRGTAK SR +D RFG  +EPN SSTK WLEKMRT
Sbjct: 254 SGEPNFESHKIEANNLQSSIEQYLEVRGTAKTSRSLDTRFGSSKEPNESSTKAWLEKMRT 313

Query: 893 LFIRKGSGFSSRSIITGDPYKGV 961
           LFIRKGSGFSSRS+ITGD YK V
Sbjct: 314 LFIRKGSGFSSRSVITGDAYKRV 336


>ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222841357|gb|EEE78904.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 924

 Score =  456 bits (1172), Expect = e-126
 Identities = 224/320 (70%), Positives = 261/320 (81%), Gaps = 3/320 (0%)
 Frame = +2

Query: 2   IRFGLANRQEICTSSNSDCPISHASQLSNPFLGLPLESGKCESCGTAEPGECEGHFGYIE 181
           IRFGLA ++EICT+S SDCPISH+SQL+NPFLGLPLE GKCESCGT+EPG+CEGHFG+I 
Sbjct: 17  IRFGLATQKEICTASISDCPISHSSQLTNPFLGLPLEFGKCESCGTSEPGKCEGHFGFIH 76

Query: 182 LPIPIYHPSHVSEXXXXXXXXXXXXXXXXXXXIQVKNVGVAERVLSMCCEEASQISISEA 361
           LPIPIYHPSH+SE                   IQ+K+ GVAER+LS CCEE +QISI E 
Sbjct: 77  LPIPIYHPSHISELKRMLSLICLKCLKLKRNKIQIKSNGVAERLLS-CCEECAQISIREV 135

Query: 362 KSADGACYLELKIPSRSHIS---WNFLERYGFRYGDGCCRALLPSEVMVILRKIPEETRK 532
           K+ DGAC+LELK+PSRS +    WNFLERYGFRYGD   R LLP EVM IL++IP ETRK
Sbjct: 136 KNTDGACFLELKLPSRSRLRDGCWNFLERYGFRYGDDFTRPLLPCEVMQILKRIPAETRK 195

Query: 533 KLAGKGFFPQDGYILQYLPVPPNCLSVPDISDGTSVMSSDHSIAVLKKVLKQIEIIKSSR 712
           KL+GKG+FPQDGYILQ LPVPPNCLSVP +SDG +VMSSD SI++LKKVLKQ E+I+SSR
Sbjct: 196 KLSGKGYFPQDGYILQQLPVPPNCLSVPVVSDGITVMSSDLSISMLKKVLKQAEVIRSSR 255

Query: 713 SGTPNFESHEIEANDLQAAVAQYLQVRGTAKASRDVDGRFGIKREPNGSSTKVWLEKMRT 892
           SG PNF++H+ EA  LQ+ V QYLQVRGT K SRDVD R+G+K+E + S+TK WLEKMRT
Sbjct: 256 SGAPNFDAHKDEATSLQSMVDQYLQVRGTTKTSRDVDTRYGVKKESSESTTKAWLEKMRT 315

Query: 893 LFIRKGSGFSSRSIITGDPY 952
           LFIRKGSGFSSRS+ITGD Y
Sbjct: 316 LFIRKGSGFSSRSVITGDAY 335


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 991

 Score =  453 bits (1165), Expect = e-125
 Identities = 228/323 (70%), Positives = 263/323 (81%), Gaps = 3/323 (0%)
 Frame = +2

Query: 2   IRFGLANRQEICTSSNSDCPISHASQLSNPFLGLPLESGKCESCGTAEPGECEGHFGYIE 181
           I+FGLA  +EI  +S SDCPISH+SQL+NPFLGLPLE GKCESCGT+EPG+CEGHFGYIE
Sbjct: 19  IKFGLATYKEISAASVSDCPISHSSQLTNPFLGLPLEFGKCESCGTSEPGKCEGHFGYIE 78

Query: 182 LPIPIYHPSHVSEXXXXXXXXXXXXXXXXXXXIQVKNVGVAERVLSMCCEEASQISISEA 361
           LPIPIYHPSHVSE                    ++K+ GVAER+ S CCEEA+QISI E 
Sbjct: 79  LPIPIYHPSHVSELKRMLSLLCLKCLKLKTN--KIKSSGVAERLFS-CCEEAAQISIKEV 135

Query: 362 KSADGACYLELKIPSRSHIS---WNFLERYGFRYGDGCCRALLPSEVMVILRKIPEETRK 532
           K+ DGA  L+LK+PSR  +    WNFLERYGFRYGD   R LLP EV+ +LR+IP++TRK
Sbjct: 136 KTTDGAYILQLKLPSRMRLRDGFWNFLERYGFRYGDDITRTLLPCEVLEMLRRIPQDTRK 195

Query: 533 KLAGKGFFPQDGYILQYLPVPPNCLSVPDISDGTSVMSSDHSIAVLKKVLKQIEIIKSSR 712
           KLA KG+FPQDGYI++Y+PVPPNCLSVPDISDG SVMSSD SI++LKKVLKQ+EIIKSSR
Sbjct: 196 KLAKKGYFPQDGYIMRYVPVPPNCLSVPDISDGVSVMSSDLSISMLKKVLKQVEIIKSSR 255

Query: 713 SGTPNFESHEIEANDLQAAVAQYLQVRGTAKASRDVDGRFGIKREPNGSSTKVWLEKMRT 892
           SG PNFESHE+EA DLQ+AV QYLQVRGTAK++RDV  RFG+ +E N SSTK WLEKMRT
Sbjct: 256 SGEPNFESHEVEAVDLQSAVDQYLQVRGTAKSARDVGERFGVHKESNDSSTKAWLEKMRT 315

Query: 893 LFIRKGSGFSSRSIITGDPYKGV 961
           LFIRKGSGFSSRS+ITGD YK V
Sbjct: 316 LFIRKGSGFSSRSVITGDAYKCV 338


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  447 bits (1151), Expect = e-123
 Identities = 222/347 (63%), Positives = 259/347 (74%), Gaps = 29/347 (8%)
 Frame = +2

Query: 2    IRFGLANRQEICTSSNSDCPISHASQLSNPFLGLPLESGKCESCGTAEPGECEG------ 163
            IRF LAN QEIC ++ SDCPI+HASQLSNPFLGLP+E GKCESCGT+EPG+CEG      
Sbjct: 18   IRFSLANGQEICIAAISDCPITHASQLSNPFLGLPIEFGKCESCGTSEPGKCEGIDFFFX 77

Query: 164  --------------------HFGYIELPIPIYHPSHVSEXXXXXXXXXXXXXXXXXXXIQ 283
                                HFGYIELPIPIYHP+H++E                     
Sbjct: 78   IFNVLHNTTXQVVFIFHLSGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMKKTKFP 137

Query: 284  VKNVGVAERVLSMCCEEASQISISEAKSADGACYLELKIPSRSHIS---WNFLERYGFRY 454
             KN+G AER+LS CCE+ASQ++I EAK ADGA YL+LK+PSR+ +    W+FLERYGFRY
Sbjct: 138  SKNIGFAERLLSSCCEDASQVTIREAKKADGASYLQLKVPSRTSLQERFWDFLERYGFRY 197

Query: 455  GDGCCRALLPSEVMVILRKIPEETRKKLAGKGFFPQDGYILQYLPVPPNCLSVPDISDGT 634
            GD   R LL   V  +L+KIP ETRKKLAG+G++PQDGYILQYLPVPPNCLSVP+ISDG 
Sbjct: 198  GDNFTRTLLSVMVKEMLKKIPNETRKKLAGRGYYPQDGYILQYLPVPPNCLSVPEISDGV 257

Query: 635  SVMSSDHSIAVLKKVLKQIEIIKSSRSGTPNFESHEIEANDLQAAVAQYLQVRGTAKASR 814
            +VMSSD ++++LKK+LKQ+EIIK SRSG PNFESHE+EANDLQ AV QYLQVRGT KASR
Sbjct: 258  TVMSSDPAVSMLKKILKQVEIIKGSRSGAPNFESHEVEANDLQLAVDQYLQVRGTVKASR 317

Query: 815  DVDGRFGIKREPNGSSTKVWLEKMRTLFIRKGSGFSSRSIITGDPYK 955
             +D RFG+ +E N  STK WLEKMRTLFIRKGSGFSSRS+ITGD YK
Sbjct: 318  GIDARFGVNKELNDPSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYK 364