BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00025252
         (1026 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vi...   342   7e-92
ref|XP_004161929.1| PREDICTED: tRNA pseudouridine synthase A-lik...   337   3e-90
gb|ABE79574.2| tRNA pseudouridine synthase [Medicago truncatula]      337   3e-90
ref|XP_003592926.1| tRNA pseudouridine synthase A [Medicago trun...   328   2e-87
ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase A-lik...   326   5e-87

>ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vitis vinifera]
           gi|297739525|emb|CBI29707.3| unnamed protein product
           [Vitis vinifera]
          Length = 380

 Score =  342 bits (878), Expect = 7e-92
 Identities = 163/197 (82%), Positives = 179/197 (90%)
 Frame = +2

Query: 86  STMKSRNPRIQRYLVAIEYIGTRFYGAQQQATCRTVVGVLEEAFRKFIGQSVSIICSSRT 265
           S   ++NPR+QRYLVA+EYIGTRF G+QQQ  CRTV G L+EAF KFIGQ VSI CSSRT
Sbjct: 52  SKTMTQNPRVQRYLVAVEYIGTRFSGSQQQLNCRTVAGALQEAFHKFIGQPVSIFCSSRT 111

Query: 266 DAGVHALSNVCHVDVERISKRKPGEVLPPHEPAVVKKAVNHFLQKNEGDIRVIDVRCVSS 445
           DAGVHALSNVCHVDVERISKRKPGEVLPPHEPAVV++AVNHFLQKNEGD+ VIDVRCV  
Sbjct: 112 DAGVHALSNVCHVDVERISKRKPGEVLPPHEPAVVRRAVNHFLQKNEGDVMVIDVRCVPP 171

Query: 446 DFHARYKAQERTYFYRLLSGPESVSTFEKDRAWHVPEELDLPTMQKACKILVGHHDFSSF 625
           DFHARYKA+ERTYFYRLLSGPE +S+FEKDRAWHVPE+LDL  MQKAC++LVG HDFSSF
Sbjct: 172 DFHARYKARERTYFYRLLSGPEPLSSFEKDRAWHVPEDLDLLAMQKACRVLVGCHDFSSF 231

Query: 626 RAAGCQAKSPIRSLDEL 676
           RAAGCQAKSPIR+LDEL
Sbjct: 232 RAAGCQAKSPIRTLDEL 248



 Score = 65.1 bits (157), Expect = 3e-08
 Identities = 34/67 (50%), Positives = 47/67 (70%)
 Frame = +1

Query: 826  DDPSECSDLNIGMPCISSASKQNTVQVSNGEASKVFGMRGRHRCFVVTARSRSFLYHQVR 1005
            ++P  CS+ N  +P   S +  + +   NG A + FG+R RHRCF+VTAR+RSFLYHQVR
Sbjct: 273  ENPLACSN-NAEVPDSPSTANHDRLDGFNG-AGQGFGVRRRHRCFLVTARARSFLYHQVR 330

Query: 1006 LIVGTLK 1026
            L+VG +K
Sbjct: 331  LLVGVIK 337


>ref|XP_004161929.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 352

 Score =  337 bits (864), Expect = 3e-90
 Identities = 160/202 (79%), Positives = 181/202 (89%), Gaps = 2/202 (0%)
 Frame = +2

Query: 77  GSDSTMKSRNPR--IQRYLVAIEYIGTRFYGAQQQATCRTVVGVLEEAFRKFIGQSVSII 250
           G +   ++ NP+  IQRYLVA+EYIGTRFYG+QQQ  CRTVVG LEEAF+KFIGQ VS+ 
Sbjct: 33  GDEEEAETMNPKPGIQRYLVAVEYIGTRFYGSQQQPNCRTVVGALEEAFQKFIGQPVSVF 92

Query: 251 CSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPAVVKKAVNHFLQKNEGDIRVIDV 430
           CSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEP VV KAVNHFLQK+EGD+ V+DV
Sbjct: 93  CSSRTDAGVHALSNVCHVDVERISKRKPGEVLPPHEPGVVHKAVNHFLQKHEGDVTVVDV 152

Query: 431 RCVSSDFHARYKAQERTYFYRLLSGPESVSTFEKDRAWHVPEELDLPTMQKACKILVGHH 610
           R V +DFHARYKAQERTYFYRL+SGPE++S+FEKDRAWHVPE L++  MQ+ACK+LVGHH
Sbjct: 153 RSVPNDFHARYKAQERTYFYRLVSGPEALSSFEKDRAWHVPETLNIGAMQEACKVLVGHH 212

Query: 611 DFSSFRAAGCQAKSPIRSLDEL 676
           DFSSFRAAGCQA SPIR+LDEL
Sbjct: 213 DFSSFRAAGCQANSPIRTLDEL 234



 Score = 62.0 bits (149), Expect = 2e-07
 Identities = 30/48 (62%), Positives = 39/48 (81%), Gaps = 1/48 (2%)
 Frame = +1

Query: 886  KQNTVQVSNGEASKV-FGMRGRHRCFVVTARSRSFLYHQVRLIVGTLK 1026
            +++ ++V   E  +V FG+R RHRCFVVTAR+RSFLYHQVRL+VG LK
Sbjct: 258  EESEIEVPCSETCEVGFGIRRRHRCFVVTARARSFLYHQVRLMVGVLK 305


>gb|ABE79574.2| tRNA pseudouridine synthase [Medicago truncatula]
          Length = 361

 Score =  337 bits (864), Expect = 3e-90
 Identities = 158/189 (83%), Positives = 177/189 (93%)
 Frame = +2

Query: 110 RIQRYLVAIEYIGTRFYGAQQQATCRTVVGVLEEAFRKFIGQSVSIICSSRTDAGVHALS 289
           +IQRYLVA+EYIGTRF+G Q+Q T RTV GVLE+AF KF+GQ VS++CSSRTDAGVHALS
Sbjct: 40  KIQRYLVAVEYIGTRFFGFQKQLTDRTVAGVLEDAFCKFVGQPVSVVCSSRTDAGVHALS 99

Query: 290 NVCHVDVERISKRKPGEVLPPHEPAVVKKAVNHFLQKNEGDIRVIDVRCVSSDFHARYKA 469
           NVCHVD+ERISKRKPGEVL PHEPAVV++AVNHFLQK  GD+ VIDVRCV SDFHARYKA
Sbjct: 100 NVCHVDIERISKRKPGEVLQPHEPAVVRRAVNHFLQKENGDLAVIDVRCVPSDFHARYKA 159

Query: 470 QERTYFYRLLSGPESVSTFEKDRAWHVPEELDLPTMQKACKILVGHHDFSSFRAAGCQAK 649
           QERTYFYRLLSGPE++STFEKDRAWH+PEEL+LP MQ+ACK+LVGHHDFSSFRA+GCQAK
Sbjct: 160 QERTYFYRLLSGPETLSTFEKDRAWHIPEELNLPAMQEACKVLVGHHDFSSFRASGCQAK 219

Query: 650 SPIRSLDEL 676
           SPIRSLDEL
Sbjct: 220 SPIRSLDEL 228


>ref|XP_003592926.1| tRNA pseudouridine synthase A [Medicago truncatula]
           gi|355481974|gb|AES63177.1| tRNA pseudouridine synthase
           A [Medicago truncatula]
          Length = 375

 Score =  328 bits (840), Expect = 2e-87
 Identities = 158/203 (77%), Positives = 178/203 (87%), Gaps = 14/203 (6%)
 Frame = +2

Query: 110 RIQRYLVAIEYIGTRFYGAQQQATCRTVVGVLEEAFRKFIGQSVSIICSSRTDAGVHALS 289
           +IQRYLVA+EYIGTRF+G Q+Q T RTV GVLE+AF KF+GQ VS++CSSRTDAGVHALS
Sbjct: 40  KIQRYLVAVEYIGTRFFGFQKQLTDRTVAGVLEDAFCKFVGQPVSVVCSSRTDAGVHALS 99

Query: 290 NVCHVDVERISKRKPGEVLPPHEPAVVKKAVNHFLQKNEGDIRVIDVRCVSSDFHARYKA 469
           NVCHVD+ERISKRKPGEVL PHEPAVV++AVNHFLQK  GD+ VIDVRCV SDFHARYKA
Sbjct: 100 NVCHVDIERISKRKPGEVLQPHEPAVVRRAVNHFLQKENGDLAVIDVRCVPSDFHARYKA 159

Query: 470 QERTYFYRLLSGPESVSTFEKDRAWHVPEELDLP--------------TMQKACKILVGH 607
           QERTYFYRLLSGPE++STFEKDRAWH+PEEL+LP              +MQ+ACK+LVGH
Sbjct: 160 QERTYFYRLLSGPETLSTFEKDRAWHIPEELNLPAMQTYHMRCESLMISMQEACKVLVGH 219

Query: 608 HDFSSFRAAGCQAKSPIRSLDEL 676
           HDFSSFRA+GCQAKSPIRSLDEL
Sbjct: 220 HDFSSFRASGCQAKSPIRSLDEL 242


>ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase A-like [Glycine max]
          Length = 369

 Score =  326 bits (836), Expect = 5e-87
 Identities = 158/195 (81%), Positives = 176/195 (90%), Gaps = 2/195 (1%)
 Frame = +2

Query: 98  SRNPR--IQRYLVAIEYIGTRFYGAQQQATCRTVVGVLEEAFRKFIGQSVSIICSSRTDA 271
           S+NPR  IQRYLVAIEYIGT F G+Q+Q   RTVVG LEEAF KF+GQ VS+ CSSRTDA
Sbjct: 41  SQNPRNGIQRYLVAIEYIGTLFSGSQKQLNVRTVVGALEEAFSKFVGQPVSVSCSSRTDA 100

Query: 272 GVHALSNVCHVDVERISKRKPGEVLPPHEPAVVKKAVNHFLQKNEGDIRVIDVRCVSSDF 451
           GVHALSNVCHVD++RISKR+PGEVLPPHEPAVV +AVNHFLQK++ D+ VIDVRCV SDF
Sbjct: 101 GVHALSNVCHVDIQRISKRRPGEVLPPHEPAVVGRAVNHFLQKHDSDLMVIDVRCVPSDF 160

Query: 452 HARYKAQERTYFYRLLSGPESVSTFEKDRAWHVPEELDLPTMQKACKILVGHHDFSSFRA 631
           HAR+KAQERTYFYRLLSGPE +STFEKDRAWHVPEEL LP MQ+AC++LVG HDFSSFRA
Sbjct: 161 HARFKAQERTYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFRA 220

Query: 632 AGCQAKSPIRSLDEL 676
           AGCQAKSPIR+LDEL
Sbjct: 221 AGCQAKSPIRTLDEL 235



 Score = 58.5 bits (140), Expect = 3e-06
 Identities = 34/67 (50%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
 Frame = +1

Query: 829  DPSECSD-LNIGMPCISSASKQNTVQVSNGEASKVFGMRGRHRCFVVTARSRSFLYHQVR 1005
            D   CS+     +P IS+ S    +  S       FG R RHRC VVTAR+RSFLYHQVR
Sbjct: 261  DLRSCSNNTETDIPPISNPSIDKVITSSQDAG---FGKRRRHRCLVVTARARSFLYHQVR 317

Query: 1006 LIVGTLK 1026
            L+VG LK
Sbjct: 318  LLVGVLK 324