BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00013387
         (934 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|D9J034.1|WHY2_SOLTU RecName: Full=Single-stranded DNA-bindig ...    53   8e-14
ref|XP_002888827.1| ATWHY2 [Arabidopsis lyrata subsp. lyrata] gi...    48   1e-08
pdb|3R9Y|A Chain A, Crystal Structure Of Stwhy2 K67a (Form I) gi...    53   1e-08
pdb|3N1H|A Chain A, Crystal Structure Of Stwhy2 gi|302566180|pdb...    53   1e-08
ref|XP_002453336.1| hypothetical protein SORBIDRAFT_04g004060 [S...    48   1e-07

>sp|D9J034.1|WHY2_SOLTU RecName: Full=Single-stranded DNA-bindig protein WHY2,
           mitochondrial; AltName: Full=Protein WHIRLY 2;
           Short=StWHY2; Flags: Precursor
           gi|298359665|gb|ADI77438.1| Why2 protein [Solanum
           tuberosum]
          Length = 238

 Score = 53.1 bits (126), Expect(2) = 8e-14
 Identities = 27/38 (71%), Positives = 29/38 (76%)
 Frame = -2

Query: 471 VVNNILKTNERFSVPVTKAEFAVMRTAFSVCLLCPASW 358
           VVNN LKTN+RF+VPVT AEFAVMRTAFS  L     W
Sbjct: 172 VVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGW 209



 Score = 50.4 bits (119), Expect(2) = 8e-14
 Identities = 20/38 (52%), Positives = 27/38 (71%)
 Frame = -1

Query: 379 FALPRIMGWDRYTNQQPTNVDGNPPKVDPRVKSLEWDR 266
           FALP IMGWDR+TN+   ++  +P KV P++   EWDR
Sbjct: 201 FALPHIMGWDRFTNRPSESISQSPSKVVPQLMEAEWDR 238


>ref|XP_002888827.1| ATWHY2 [Arabidopsis lyrata subsp. lyrata]
           gi|297334668|gb|EFH65086.1| ATWHY2 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 242

 Score = 48.1 bits (113), Expect(2) = 1e-08
 Identities = 25/38 (65%), Positives = 27/38 (71%)
 Frame = -2

Query: 471 VVNNILKTNERFSVPVTKAEFAVMRTAFSVCLLCPASW 358
           V N ILKTN+ F VPVTKAEFAVM+TAFS  L     W
Sbjct: 173 VNNGILKTNDYFVVPVTKAEFAVMKTAFSFALPHIMGW 210



 Score = 37.7 bits (86), Expect(2) = 1e-08
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
 Frame = -1

Query: 379 FALPRIMGWDRYTNQQPTNVDGNPP------KVDPRVKSLEWDR 266
           FALP IMGW+R T Q   N +  PP      K DP+++ LEWD+
Sbjct: 202 FALPHIMGWNRLTGQ--GNTEALPPRNVTHLKTDPQLE-LEWDK 242


>pdb|3R9Y|A Chain A, Crystal Structure Of Stwhy2 K67a (Form I)
           gi|347948613|pdb|3R9Z|A Chain A, Crystal Structure Of
           Stwhy2 K67a (Form Ii) gi|347948614|pdb|3RA0|A Chain A,
           Crystal Structure Of A Stwhy2 K67a-Dt32 Complex
          Length = 178

 Score = 53.1 bits (126), Expect(2) = 1e-08
 Identities = 27/38 (71%), Positives = 29/38 (76%)
 Frame = -2

Query: 471 VVNNILKTNERFSVPVTKAEFAVMRTAFSVCLLCPASW 358
           VVNN LKTN+RF+VPVT AEFAVMRTAFS  L     W
Sbjct: 126 VVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGW 163



 Score = 32.7 bits (73), Expect(2) = 1e-08
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = -1

Query: 379 FALPRIMGWDRYTNQ 335
           FALP IMGWDR+TN+
Sbjct: 155 FALPHIMGWDRFTNR 169


>pdb|3N1H|A Chain A, Crystal Structure Of Stwhy2 gi|302566180|pdb|3N1I|A Chain
           A, Crystal Structure Of A Stwhy2-Ere32 Complex
           gi|302566182|pdb|3N1J|A Chain A, Crystal Structure Of A
           Stwhy2-Dt32 Complex gi|302566184|pdb|3N1K|A Chain A,
           Crystal Structure Of A Stwhy2-Cere32 Complex
           gi|302566186|pdb|3N1L|A Chain A, Crystal Structure Of A
           Stwhy2-Rcere32 Complex
          Length = 178

 Score = 53.1 bits (126), Expect(2) = 1e-08
 Identities = 27/38 (71%), Positives = 29/38 (76%)
 Frame = -2

Query: 471 VVNNILKTNERFSVPVTKAEFAVMRTAFSVCLLCPASW 358
           VVNN LKTN+RF+VPVT AEFAVMRTAFS  L     W
Sbjct: 126 VVNNNLKTNDRFTVPVTTAEFAVMRTAFSFALPHIMGW 163



 Score = 32.7 bits (73), Expect(2) = 1e-08
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = -1

Query: 379 FALPRIMGWDRYTNQ 335
           FALP IMGWDR+TN+
Sbjct: 155 FALPHIMGWDRFTNR 169


>ref|XP_002453336.1| hypothetical protein SORBIDRAFT_04g004060 [Sorghum bicolor]
           gi|241933167|gb|EES06312.1| hypothetical protein
           SORBIDRAFT_04g004060 [Sorghum bicolor]
          Length = 230

 Score = 47.8 bits (112), Expect(2) = 1e-07
 Identities = 23/38 (60%), Positives = 27/38 (71%)
 Frame = -2

Query: 471 VVNNILKTNERFSVPVTKAEFAVMRTAFSVCLLCPASW 358
           VVN++ KTN+R SVP+TKAEFAVMRT  S  L     W
Sbjct: 163 VVNSVEKTNDRLSVPITKAEFAVMRTTLSFALPHIMGW 200



 Score = 34.7 bits (78), Expect(2) = 1e-07
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 379 FALPRIMGWDR-YTNQQPTNVDGNPPKVDPRVKSLEWDR 266
           FALP IMGWD+  TN  P+    + P+V+      EW+R
Sbjct: 192 FALPHIMGWDQALTNHHPSPPAISKPRVERPHPDSEWER 230