BLASTX nr result

ID: Panax21_contig00012696 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00012696
         (506 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002892088.1| hypothetical protein ARALYDRAFT_333551 [Arab...   102   3e-20
gb|AAF03534.1|AF187317_1 CAF protein [Arabidopsis thaliana]           100   1e-19
gb|AAF26461.1|AC007323_2 T25K16.4 [Arabidopsis thaliana]              100   1e-19
ref|NP_171612.1| endoribonuclease Dicer [Arabidopsis thaliana] g...   100   1e-19
gb|AFD22618.1| dicer-like 1 protein, partial [Nicotiana attenuata]    100   1e-19

>ref|XP_002892088.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp.
            lyrata] gi|297337930|gb|EFH68347.1| hypothetical protein
            ARALYDRAFT_333551 [Arabidopsis lyrata subsp. lyrata]
          Length = 1962

 Score =  102 bits (254), Expect = 3e-20
 Identities = 50/61 (81%), Positives = 55/61 (90%)
 Frame = +3

Query: 318  SSILEALTASSCQETFCYERAKLLGDAYLKLVVS*YLFLRYPQKHEGQLTRM*QQMIRDF 497
            S ILEALTA+SCQETFCYERA+LLGDAYLK VVS YLFL+YPQKHEGQLTRM QQM+ + 
Sbjct: 1410 SKILEALTAASCQETFCYERAELLGDAYLKWVVSRYLFLKYPQKHEGQLTRMRQQMVSNM 1469

Query: 498  V 500
            V
Sbjct: 1470 V 1470


>gb|AAF03534.1|AF187317_1 CAF protein [Arabidopsis thaliana]
          Length = 1909

 Score =  100 bits (250), Expect = 1e-19
 Identities = 49/61 (80%), Positives = 55/61 (90%)
 Frame = +3

Query: 318  SSILEALTASSCQETFCYERAKLLGDAYLKLVVS*YLFLRYPQKHEGQLTRM*QQMIRDF 497
            S ILEALTA+SCQETFCYERA+LLGDAYLK VVS +LFL+YPQKHEGQLTRM QQM+ + 
Sbjct: 1357 SKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNM 1416

Query: 498  V 500
            V
Sbjct: 1417 V 1417


>gb|AAF26461.1|AC007323_2 T25K16.4 [Arabidopsis thaliana]
          Length = 2024

 Score =  100 bits (250), Expect = 1e-19
 Identities = 49/61 (80%), Positives = 55/61 (90%)
 Frame = +3

Query: 318  SSILEALTASSCQETFCYERAKLLGDAYLKLVVS*YLFLRYPQKHEGQLTRM*QQMIRDF 497
            S ILEALTA+SCQETFCYERA+LLGDAYLK VVS +LFL+YPQKHEGQLTRM QQM+ + 
Sbjct: 1445 SKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNM 1504

Query: 498  V 500
            V
Sbjct: 1505 V 1505


>ref|NP_171612.1| endoribonuclease Dicer [Arabidopsis thaliana]
            gi|34922211|sp|Q9SP32.2|DCL1_ARATH RecName:
            Full=Endoribonuclease Dicer homolog 1; AltName:
            Full=Dicer-like protein 1; Short=AtDCL1; AltName:
            Full=Protein ABNORMAL SUSPENSOR 1; AltName: Full=Protein
            CARPEL FACTORY; AltName: Full=Protein SHORT INTEGUMENTS
            1; AltName: Full=Protein SUSPENSOR 1
            gi|11559645|gb|AAG38019.1|AF292940_1 short integuments 1
            [Arabidopsis thaliana]
            gi|11559647|gb|AAG38020.1|AF292941_1 short integuments 1
            [Arabidopsis thaliana] gi|332189099|gb|AEE27220.1|
            endoribonuclease Dicer [Arabidopsis thaliana]
          Length = 1909

 Score =  100 bits (250), Expect = 1e-19
 Identities = 49/61 (80%), Positives = 55/61 (90%)
 Frame = +3

Query: 318  SSILEALTASSCQETFCYERAKLLGDAYLKLVVS*YLFLRYPQKHEGQLTRM*QQMIRDF 497
            S ILEALTA+SCQETFCYERA+LLGDAYLK VVS +LFL+YPQKHEGQLTRM QQM+ + 
Sbjct: 1357 SKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNM 1416

Query: 498  V 500
            V
Sbjct: 1417 V 1417


>gb|AFD22618.1| dicer-like 1 protein, partial [Nicotiana attenuata]
          Length = 1690

 Score =  100 bits (250), Expect = 1e-19
 Identities = 49/59 (83%), Positives = 54/59 (91%)
 Frame = +3

Query: 324  ILEALTASSCQETFCYERAKLLGDAYLKLVVS*YLFLRYPQKHEGQLTRM*QQMIRDFV 500
            ILEALTA+SCQETFCYERA+LLGDAYLK VVS YLFL+YPQKHEGQLTRM QQM+ + V
Sbjct: 1146 ILEALTAASCQETFCYERAELLGDAYLKWVVSRYLFLKYPQKHEGQLTRMRQQMVSNMV 1204


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