BLASTX nr result

ID: Panax21_contig00011232 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00011232
         (382 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309350.1| predicted protein [Populus trichocarpa] gi|2...   240   1e-61
ref|XP_002324537.1| predicted protein [Populus trichocarpa] gi|2...   236   1e-60
ref|XP_003527179.1| PREDICTED: signal recognition particle recep...   236   1e-60
ref|XP_003610309.1| Signal recognition particle receptor subunit...   235   3e-60
ref|XP_002529394.1| signal recognition particle receptor alpha s...   234   5e-60

>ref|XP_002309350.1| predicted protein [Populus trichocarpa] gi|222855326|gb|EEE92873.1|
           predicted protein [Populus trichocarpa]
          Length = 624

 Score =  240 bits (612), Expect = 1e-61
 Identities = 122/126 (96%), Positives = 125/126 (99%)
 Frame = +3

Query: 3   IPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYVNSPDL 182
           IPIFEKGYEKDPA+VAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIY+N+PDL
Sbjct: 474 IPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 533

Query: 183 VLFVGEALVGNDAVDQLSKFNQKLADLSPSPNPRLIDGILLTKFDTIDDKVGAALSMVYI 362
           VLFVGEALVGNDAVDQLSKFNQKLADLS SPNPRLIDGILLTKFDTIDDKVGAALSMVYI
Sbjct: 534 VLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDGILLTKFDTIDDKVGAALSMVYI 593

Query: 363 SGSPVM 380
           SGSPVM
Sbjct: 594 SGSPVM 599


>ref|XP_002324537.1| predicted protein [Populus trichocarpa] gi|222865971|gb|EEF03102.1|
           predicted protein [Populus trichocarpa]
          Length = 312

 Score =  236 bits (603), Expect = 1e-60
 Identities = 121/126 (96%), Positives = 124/126 (98%)
 Frame = +3

Query: 3   IPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYVNSPDL 182
           IPIFEKGYEKDPA+VAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLI +N+PDL
Sbjct: 162 IPIFEKGYEKDPAVVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLINLNNPDL 221

Query: 183 VLFVGEALVGNDAVDQLSKFNQKLADLSPSPNPRLIDGILLTKFDTIDDKVGAALSMVYI 362
           VLFVGEALVGNDAVDQLSKFNQKLADLS SPNPRLIDGILLTKFDTIDDKVGAALSMVYI
Sbjct: 222 VLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDGILLTKFDTIDDKVGAALSMVYI 281

Query: 363 SGSPVM 380
           SGSPVM
Sbjct: 282 SGSPVM 287


>ref|XP_003527179.1| PREDICTED: signal recognition particle receptor subunit alpha-like
           [Glycine max]
          Length = 623

 Score =  236 bits (602), Expect = 1e-60
 Identities = 119/126 (94%), Positives = 125/126 (99%)
 Frame = +3

Query: 3   IPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYVNSPDL 182
           IPIFEKGYEKDPA+VAKEAIQEA+RNGSDVVLVDTAGRMQDNEPLMRALSKLIY+N+PDL
Sbjct: 473 IPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 532

Query: 183 VLFVGEALVGNDAVDQLSKFNQKLADLSPSPNPRLIDGILLTKFDTIDDKVGAALSMVYI 362
           VLFVGEALVGNDAVDQLSKFNQKLADL+ SPNPRLIDGILLTKFDTIDDKVGAALSMVYI
Sbjct: 533 VLFVGEALVGNDAVDQLSKFNQKLADLATSPNPRLIDGILLTKFDTIDDKVGAALSMVYI 592

Query: 363 SGSPVM 380
           SG+PVM
Sbjct: 593 SGAPVM 598


>ref|XP_003610309.1| Signal recognition particle receptor subunit alpha [Medicago
           truncatula] gi|355511364|gb|AES92506.1| Signal
           recognition particle receptor subunit alpha [Medicago
           truncatula]
          Length = 631

 Score =  235 bits (599), Expect = 3e-60
 Identities = 119/126 (94%), Positives = 124/126 (98%)
 Frame = +3

Query: 3   IPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYVNSPDL 182
           IPIFEKGYEKDPA+VAKEAIQEA+RNGSDVVLVDTAGRMQDNEPLMRALSKLIY+N+PDL
Sbjct: 481 IPIFEKGYEKDPAVVAKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 540

Query: 183 VLFVGEALVGNDAVDQLSKFNQKLADLSPSPNPRLIDGILLTKFDTIDDKVGAALSMVYI 362
           VLFVGEALVGNDAVDQLSKFNQKLADLS SP PRLIDGILLTKFDTIDDKVGAALSMVYI
Sbjct: 541 VLFVGEALVGNDAVDQLSKFNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYI 600

Query: 363 SGSPVM 380
           SG+PVM
Sbjct: 601 SGAPVM 606


>ref|XP_002529394.1| signal recognition particle receptor alpha subunit, putative
           [Ricinus communis] gi|223531142|gb|EEF32990.1| signal
           recognition particle receptor alpha subunit, putative
           [Ricinus communis]
          Length = 618

 Score =  234 bits (597), Expect = 5e-60
 Identities = 120/126 (95%), Positives = 123/126 (97%)
 Frame = +3

Query: 3   IPIFEKGYEKDPAIVAKEAIQEATRNGSDVVLVDTAGRMQDNEPLMRALSKLIYVNSPDL 182
           IPIFEKGYEKDPAIVAKEAIQEA R GSDVVLVDTAGRMQDNEPLMRALSKLIY+N+PDL
Sbjct: 468 IPIFEKGYEKDPAIVAKEAIQEAARYGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDL 527

Query: 183 VLFVGEALVGNDAVDQLSKFNQKLADLSPSPNPRLIDGILLTKFDTIDDKVGAALSMVYI 362
           VLFVGEALVGNDAVDQLSKFNQKLADLS SPNPRLIDGILLTKFDTIDDKVGAALSMVYI
Sbjct: 528 VLFVGEALVGNDAVDQLSKFNQKLADLSTSPNPRLIDGILLTKFDTIDDKVGAALSMVYI 587

Query: 363 SGSPVM 380
           SG+PVM
Sbjct: 588 SGAPVM 593


Top