BLASTX nr result

ID: Panax21_contig00010123 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00010123
         (373 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN80371.1| hypothetical protein VITISV_014723 [Vitis vinifera]    92   3e-17
ref|XP_002266603.2| PREDICTED: auxin response factor 5-like [Vit...    92   6e-17
emb|CBI24055.3| unnamed protein product [Vitis vinifera]               92   6e-17
ref|XP_002331440.1| predicted protein [Populus trichocarpa] gi|2...    80   2e-13
ref|XP_002519813.1| Auxin response factor, putative [Ricinus com...    77   1e-12

>emb|CAN80371.1| hypothetical protein VITISV_014723 [Vitis vinifera]
          Length = 1096

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 46/85 (54%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
 Frame = -1

Query: 370 KRMLDXXXXXXXXXXXSKVLEMPQITAKSLPQTHIIPQQMTRNNSQTNVRFSHPPQQSKL 191
           +++LD            ++LEMPQ T+ SLPQ+ +IPQQ+T++NSQTNVRFSHPPQQ KL
Sbjct: 622 RQLLDVSQNFSRSVASGQILEMPQATSTSLPQSLVIPQQITKSNSQTNVRFSHPPQQPKL 681

Query: 190 -QQQPGVLTEFSGHMGHTPAPTTNQ 119
            QQQPG+L E  GH+   P   TNQ
Sbjct: 682 QQQQPGMLPELPGHVXLPPMTATNQ 706


>ref|XP_002266603.2| PREDICTED: auxin response factor 5-like [Vitis vinifera]
          Length = 1117

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 46/85 (54%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
 Frame = -1

Query: 370 KRMLDXXXXXXXXXXXSKVLEMPQITAKSLPQTHIIPQQMTRNNSQTNVRFSHPPQQSKL 191
           +++LD            ++LEMPQ T+ SLPQ+ +IPQQ+T++NSQTNVRFSHPPQQ KL
Sbjct: 653 RQLLDVSQNFSRSVASGQILEMPQATSTSLPQSLVIPQQITKSNSQTNVRFSHPPQQPKL 712

Query: 190 -QQQPGVLTEFSGHMGHTPAPTTNQ 119
            QQQPG+L E  GH+   P   TNQ
Sbjct: 713 QQQQPGMLPELPGHVVLPPMTATNQ 737


>emb|CBI24055.3| unnamed protein product [Vitis vinifera]
          Length = 1034

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 46/85 (54%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
 Frame = -1

Query: 370 KRMLDXXXXXXXXXXXSKVLEMPQITAKSLPQTHIIPQQMTRNNSQTNVRFSHPPQQSKL 191
           +++LD            ++LEMPQ T+ SLPQ+ +IPQQ+T++NSQTNVRFSHPPQQ KL
Sbjct: 570 RQLLDVSQNFSRSVASGQILEMPQATSTSLPQSLVIPQQITKSNSQTNVRFSHPPQQPKL 629

Query: 190 -QQQPGVLTEFSGHMGHTPAPTTNQ 119
            QQQPG+L E  GH+   P   TNQ
Sbjct: 630 QQQQPGMLPELPGHVVLPPMTATNQ 654


>ref|XP_002331440.1| predicted protein [Populus trichocarpa] gi|222873654|gb|EEF10785.1|
           predicted protein [Populus trichocarpa]
          Length = 1113

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 43/87 (49%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
 Frame = -1

Query: 370 KRMLDXXXXXXXXXXXSKVLEMPQITAKSLPQTHIIPQQMTRNNSQTNVRFSHPPQQSKL 191
           +++LD           S++LE+PQ T  SLPQ + IPQQMT+NN+QTN RFSH PQQ K 
Sbjct: 644 RQLLDASQSFSRSMTPSQMLEIPQTTPTSLPQPNTIPQQMTKNNNQTNTRFSHLPQQLKP 703

Query: 190 QQQPG---VLTEFSGHMGHTPAPTTNQ 119
           QQQ     +L+E +GHMG  P+   NQ
Sbjct: 704 QQQHSGIMLLSEMAGHMGLPPSSMANQ 730


>ref|XP_002519813.1| Auxin response factor, putative [Ricinus communis]
           gi|223541052|gb|EEF42609.1| Auxin response factor,
           putative [Ricinus communis]
          Length = 1109

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 39/65 (60%), Positives = 48/65 (73%)
 Frame = -1

Query: 310 EMPQITAKSLPQTHIIPQQMTRNNSQTNVRFSHPPQQSKLQQQPGVLTEFSGHMGHTPAP 131
           EMPQ T  SLPQ++I  QQMT+N+SQT+ RFS  PQQ K QQQPG+L+E +G MG  P+ 
Sbjct: 672 EMPQTTPTSLPQSNI-QQQMTKNSSQTSGRFSQLPQQLKFQQQPGILSEMAGDMGLPPSS 730

Query: 130 TTNQH 116
             NQH
Sbjct: 731 AINQH 735


Top