BLASTX nr result

ID: Panax21_contig00008445 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00008445
         (428 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002321911.1| predicted protein [Populus trichocarpa] gi|1...   285   2e-75
gb|ABK21275.1| unknown [Picea sitchensis]                             283   1e-74
ref|XP_002269748.1| PREDICTED: cleavage and polyadenylation spec...   282   2e-74
ref|XP_004133873.1| PREDICTED: cleavage and polyadenylation spec...   282   2e-74
ref|XP_002510802.1| pre-mRNA cleavage factor im, 25kD subunit, p...   281   3e-74

>ref|XP_002321911.1| predicted protein [Populus trichocarpa] gi|118487488|gb|ABK95571.1|
           unknown [Populus trichocarpa]
           gi|222868907|gb|EEF06038.1| predicted protein [Populus
           trichocarpa]
          Length = 202

 Score =  285 bits (730), Expect = 2e-75
 Identities = 133/140 (95%), Positives = 138/140 (98%)
 Frame = +1

Query: 7   SYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKL 186
           +YMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKL+SKL
Sbjct: 42  NYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKL 101

Query: 187 AANSPSLQPNWQIGECVATWWRPNFETIMYPYCPPHITKPKECKKLYLVYLSEREYFAVP 366
            ANSP+L P+WQIGECVATWWRPNFETIMYPYCPPHITKPKECKKLYLV+LSEREYFAVP
Sbjct: 102 GANSPALVPDWQIGECVATWWRPNFETIMYPYCPPHITKPKECKKLYLVHLSEREYFAVP 161

Query: 367 KNLKLLAVPLFELYDNVQRY 426
           KNLKLLAVPLFELYDNVQRY
Sbjct: 162 KNLKLLAVPLFELYDNVQRY 181


>gb|ABK21275.1| unknown [Picea sitchensis]
          Length = 177

 Score =  283 bits (724), Expect = 1e-74
 Identities = 131/140 (93%), Positives = 138/140 (98%)
 Frame = +1

Query: 7   SYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKL 186
           +YMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENE+EGLKRKLSSKL
Sbjct: 17  NYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEVEGLKRKLSSKL 76

Query: 187 AANSPSLQPNWQIGECVATWWRPNFETIMYPYCPPHITKPKECKKLYLVYLSEREYFAVP 366
           AANS +LQP+WQIGECVA WWRPNFET+MYPYCPPHITKPKECKKL+LV+LSEREYFAVP
Sbjct: 77  AANSTTLQPDWQIGECVAVWWRPNFETLMYPYCPPHITKPKECKKLFLVHLSEREYFAVP 136

Query: 367 KNLKLLAVPLFELYDNVQRY 426
           KNLKLLAVPLFELYDNVQRY
Sbjct: 137 KNLKLLAVPLFELYDNVQRY 156


>ref|XP_002269748.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           5 isoform 1 [Vitis vinifera]
           gi|297745235|emb|CBI40315.3| unnamed protein product
           [Vitis vinifera]
          Length = 200

 Score =  282 bits (722), Expect = 2e-74
 Identities = 132/140 (94%), Positives = 138/140 (98%)
 Frame = +1

Query: 7   SYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKL 186
           +YMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKL
Sbjct: 40  NYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKL 99

Query: 187 AANSPSLQPNWQIGECVATWWRPNFETIMYPYCPPHITKPKECKKLYLVYLSEREYFAVP 366
           AANS +LQP+WQIGECVA WWRPNFETIMYPYCPPHITKPKECKKL++V+LSEREYFAVP
Sbjct: 100 AANSLALQPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFIVHLSEREYFAVP 159

Query: 367 KNLKLLAVPLFELYDNVQRY 426
           KNLKLLAVPLFELYDNVQRY
Sbjct: 160 KNLKLLAVPLFELYDNVQRY 179


>ref|XP_004133873.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
           5-like [Cucumis sativus]
           gi|449480168|ref|XP_004155818.1| PREDICTED: cleavage and
           polyadenylation specificity factor subunit 5-like
           [Cucumis sativus]
          Length = 200

 Score =  282 bits (721), Expect = 2e-74
 Identities = 130/140 (92%), Positives = 137/140 (97%)
 Frame = +1

Query: 7   SYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKL 186
           +YMKEGMRTSVEAILLVQEH HPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKL+SKL
Sbjct: 40  NYMKEGMRTSVEAILLVQEHKHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKL 99

Query: 187 AANSPSLQPNWQIGECVATWWRPNFETIMYPYCPPHITKPKECKKLYLVYLSEREYFAVP 366
            ANSPSLQP+WQIGECVA WWRPNFET+MYPYCPPHITKPKECKKL++V+LSEREYFAVP
Sbjct: 100 GANSPSLQPDWQIGECVAIWWRPNFETVMYPYCPPHITKPKECKKLFIVHLSEREYFAVP 159

Query: 367 KNLKLLAVPLFELYDNVQRY 426
           KNLKLLAVPLFELYDNVQRY
Sbjct: 160 KNLKLLAVPLFELYDNVQRY 179


>ref|XP_002510802.1| pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus
           communis] gi|223549917|gb|EEF51404.1| pre-mRNA cleavage
           factor im, 25kD subunit, putative [Ricinus communis]
          Length = 200

 Score =  281 bits (720), Expect = 3e-74
 Identities = 131/140 (93%), Positives = 137/140 (97%)
 Frame = +1

Query: 7   SYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLSSKL 186
           +YMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKL+SKL
Sbjct: 40  NYMKEGMRTSVEAILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKL 99

Query: 187 AANSPSLQPNWQIGECVATWWRPNFETIMYPYCPPHITKPKECKKLYLVYLSEREYFAVP 366
            ANSP+L P+WQIGECVA WWRPNFETIMYPYCPPHITKPKECKKL+LV+LSEREYFAVP
Sbjct: 100 GANSPALVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVP 159

Query: 367 KNLKLLAVPLFELYDNVQRY 426
           KNLKLLAVPLFELYDNVQRY
Sbjct: 160 KNLKLLAVPLFELYDNVQRY 179


Top