BLASTX nr result

ID: Panax21_contig00008378 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00008378
         (487 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631761.1| PREDICTED: transcription initiation factor T...    86   2e-15
ref|XP_004145505.1| PREDICTED: transcription initiation factor T...    84   9e-15
emb|CAN63613.1| hypothetical protein VITISV_005881 [Vitis vinifera]    83   2e-14
ref|XP_002515435.1| protein with unknown function [Ricinus commu...    81   1e-13
ref|XP_002324907.1| predicted protein [Populus trichocarpa] gi|2...    80   2e-13

>ref|XP_003631761.1| PREDICTED: transcription initiation factor TFIID subunit 5-like
           isoform 2 [Vitis vinifera] gi|296082065|emb|CBI21070.3|
           unnamed protein product [Vitis vinifera]
          Length = 676

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 44/53 (83%), Positives = 50/53 (94%)
 Frame = +3

Query: 3   STRVPKTEENKSGTTTNRLRSLKTLPTKSTPVYALRFSRRNLLFAAGALSTNG 161
           ST+VP++EENKSG T+ RLRSLKTLPTKSTPVY+LRFSRRNLLFAAGALS +G
Sbjct: 625 STKVPRSEENKSGNTS-RLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALSKSG 676


>ref|XP_004145505.1| PREDICTED: transcription initiation factor TFIID subunit 5-like
           [Cucumis sativus] gi|449485181|ref|XP_004157092.1|
           PREDICTED: transcription initiation factor TFIID subunit
           5-like [Cucumis sativus]
          Length = 674

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 43/52 (82%), Positives = 48/52 (92%)
 Frame = +3

Query: 3   STRVPKTEENKSGTTTNRLRSLKTLPTKSTPVYALRFSRRNLLFAAGALSTN 158
           ST+ P+T+ENK+GT  NRLRSLKTLPTKSTPVY+LRFSRRNLLFAAGALS N
Sbjct: 620 STKPPRTDENKTGTP-NRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGALSKN 670


>emb|CAN63613.1| hypothetical protein VITISV_005881 [Vitis vinifera]
          Length = 118

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 43/53 (81%), Positives = 49/53 (92%)
 Frame = +3

Query: 3   STRVPKTEENKSGTTTNRLRSLKTLPTKSTPVYALRFSRRNLLFAAGALSTNG 161
           ST+VP++EENKSG T+ RLRSLKTL TKSTPVY+LRFSRRNLLFAAGALS +G
Sbjct: 67  STKVPRSEENKSGNTS-RLRSLKTLXTKSTPVYSLRFSRRNLLFAAGALSKSG 118


>ref|XP_002515435.1| protein with unknown function [Ricinus communis]
           gi|223545379|gb|EEF46884.1| protein with unknown
           function [Ricinus communis]
          Length = 670

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 42/53 (79%), Positives = 47/53 (88%)
 Frame = +3

Query: 3   STRVPKTEENKSGTTTNRLRSLKTLPTKSTPVYALRFSRRNLLFAAGALSTNG 161
           ST+V K EE+KSG+  NRLRSLKTLPTKSTPVY+LRFSRRNLLFAAG LS +G
Sbjct: 619 STKVTKAEESKSGSA-NRLRSLKTLPTKSTPVYSLRFSRRNLLFAAGVLSKSG 670


>ref|XP_002324907.1| predicted protein [Populus trichocarpa] gi|222866341|gb|EEF03472.1|
           predicted protein [Populus trichocarpa]
          Length = 675

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 41/50 (82%), Positives = 45/50 (90%)
 Frame = +3

Query: 3   STRVPKTEENKSGTTTNRLRSLKTLPTKSTPVYALRFSRRNLLFAAGALS 152
           ST+ P+TEE+KSG T NRLR LKTLPTKSTPVY LRFSRRNLLFAAGAL+
Sbjct: 624 STKAPRTEESKSGNT-NRLRLLKTLPTKSTPVYTLRFSRRNLLFAAGALA 672


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