BLASTX nr result
ID: Panax21_contig00008291
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00008291
(876 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285679.1| PREDICTED: probable DNA primase large subuni... 67 4e-09
ref|XP_002303780.1| predicted protein [Populus trichocarpa] gi|2... 67 4e-09
dbj|BAD31370.1| putative DNA primase large subunit [Oryza sativa... 66 9e-09
ref|NP_001059432.1| Os07g0406800 [Oryza sativa Japonica Group] g... 66 9e-09
ref|XP_002514889.1| DNA primase large subunit, putative [Ricinus... 66 9e-09
>ref|XP_002285679.1| PREDICTED: probable DNA primase large subunit [Vitis vinifera]
gi|297741936|emb|CBI33371.3| unnamed protein product
[Vitis vinifera]
Length = 452
Score = 67.4 bits (163), Expect = 4e-09
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = +2
Query: 113 DYTPYSCQKIISSTPGVGDHHGCPYRYF 196
DYTPYSCQKIISSTPGVGDHHGCPYR+F
Sbjct: 352 DYTPYSCQKIISSTPGVGDHHGCPYRHF 379
Score = 54.3 bits (129), Expect(2) = 7e-08
Identities = 24/29 (82%), Positives = 24/29 (82%)
Frame = +3
Query: 573 EAVHSSSCDTGINHPNQYFSDSQSILKSK 659
EAVH SSCD GINHPNQYFSDSQ IL K
Sbjct: 419 EAVHGSSCDAGINHPNQYFSDSQKILHPK 447
Score = 28.9 bits (63), Expect(2) = 7e-08
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +2
Query: 518 SEENLRAALGKMG 556
SEENLRAALGKMG
Sbjct: 380 SEENLRAALGKMG 392
>ref|XP_002303780.1| predicted protein [Populus trichocarpa] gi|222841212|gb|EEE78759.1|
predicted protein [Populus trichocarpa]
Length = 453
Score = 67.4 bits (163), Expect = 4e-09
Identities = 27/28 (96%), Positives = 28/28 (100%)
Frame = +2
Query: 113 DYTPYSCQKIISSTPGVGDHHGCPYRYF 196
DYTPYSCQKIISSTPGVGDHHGCPYR+F
Sbjct: 355 DYTPYSCQKIISSTPGVGDHHGCPYRHF 382
Score = 53.5 bits (127), Expect(2) = 1e-06
Identities = 23/32 (71%), Positives = 25/32 (78%)
Frame = +3
Query: 573 EAVHSSSCDTGINHPNQYFSDSQSILKSKSHA 668
E++H SS D GINHPNQYFSDSQ KSK HA
Sbjct: 422 ESIHGSSYDAGINHPNQYFSDSQKFFKSKVHA 453
Score = 25.4 bits (54), Expect(2) = 1e-06
Identities = 11/13 (84%), Positives = 12/13 (92%)
Frame = +2
Query: 518 SEENLRAALGKMG 556
SEENLRAAL +MG
Sbjct: 383 SEENLRAALSRMG 395
>dbj|BAD31370.1| putative DNA primase large subunit [Oryza sativa Japonica Group]
gi|50510257|dbj|BAD31462.1| putative DNA primase large
subunit [Oryza sativa Japonica Group]
Length = 258
Score = 66.2 bits (160), Expect = 9e-09
Identities = 26/28 (92%), Positives = 28/28 (100%)
Frame = +2
Query: 113 DYTPYSCQKIISSTPGVGDHHGCPYRYF 196
DYTPYSCQKIIS+TPGVGDHHGCPYR+F
Sbjct: 153 DYTPYSCQKIISATPGVGDHHGCPYRHF 180
Score = 57.4 bits (137), Expect(2) = 3e-07
Identities = 25/37 (67%), Positives = 29/37 (78%)
Frame = +3
Query: 573 EAVHSSSCDTGINHPNQYFSDSQSILKSKSHASQIHG 683
EA H SCDTGINHPNQYFS+SQ +LK+K+ A Q G
Sbjct: 220 EAEHGVSCDTGINHPNQYFSESQKVLKAKNQAVQSQG 256
Score = 23.9 bits (50), Expect(2) = 3e-07
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 521 EENLRAALGKMG 556
E+NLRAAL KMG
Sbjct: 182 EDNLRAALNKMG 193
>ref|NP_001059432.1| Os07g0406800 [Oryza sativa Japonica Group]
gi|50510201|dbj|BAD31369.1| putative DNA primase large
subunit [Oryza sativa Japonica Group]
gi|50510256|dbj|BAD31461.1| putative DNA primase large
subunit [Oryza sativa Japonica Group]
gi|113610968|dbj|BAF21346.1| Os07g0406800 [Oryza sativa
Japonica Group] gi|215678806|dbj|BAG95243.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|222636872|gb|EEE67004.1| hypothetical protein
OsJ_23920 [Oryza sativa Japonica Group]
Length = 463
Score = 66.2 bits (160), Expect = 9e-09
Identities = 26/28 (92%), Positives = 28/28 (100%)
Frame = +2
Query: 113 DYTPYSCQKIISSTPGVGDHHGCPYRYF 196
DYTPYSCQKIIS+TPGVGDHHGCPYR+F
Sbjct: 358 DYTPYSCQKIISATPGVGDHHGCPYRHF 385
Score = 57.4 bits (137), Expect(2) = 3e-07
Identities = 25/37 (67%), Positives = 29/37 (78%)
Frame = +3
Query: 573 EAVHSSSCDTGINHPNQYFSDSQSILKSKSHASQIHG 683
EA H SCDTGINHPNQYFS+SQ +LK+K+ A Q G
Sbjct: 425 EAEHGVSCDTGINHPNQYFSESQKVLKAKNQAVQSQG 461
Score = 23.9 bits (50), Expect(2) = 3e-07
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = +2
Query: 521 EENLRAALGKMG 556
E+NLRAAL KMG
Sbjct: 387 EDNLRAALNKMG 398
>ref|XP_002514889.1| DNA primase large subunit, putative [Ricinus communis]
gi|223545940|gb|EEF47443.1| DNA primase large subunit,
putative [Ricinus communis]
Length = 444
Score = 66.2 bits (160), Expect = 9e-09
Identities = 26/28 (92%), Positives = 28/28 (100%)
Frame = +2
Query: 113 DYTPYSCQKIISSTPGVGDHHGCPYRYF 196
DYTPY+CQKIISSTPGVGDHHGCPYR+F
Sbjct: 347 DYTPYACQKIISSTPGVGDHHGCPYRHF 374
Score = 53.9 bits (128), Expect(2) = 3e-06
Identities = 23/29 (79%), Positives = 24/29 (82%)
Frame = +3
Query: 573 EAVHSSSCDTGINHPNQYFSDSQSILKSK 659
EA+H SCD GINHPNQYFSDSQ ILK K
Sbjct: 414 EAIHGLSCDAGINHPNQYFSDSQKILKPK 442
Score = 23.9 bits (50), Expect(2) = 3e-06
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +2
Query: 518 SEENLRAALGKMG 556
SEENLRAAL MG
Sbjct: 375 SEENLRAALSGMG 387