BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00008178
         (590 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   121   1e-25
ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|2...   112   4e-23
ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor rpoD-...   112   5e-23
ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor rpoD-...   109   4e-22
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      103   3e-20

>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 508

 Score =  121 bits (303), Expect = 1e-25
 Identities = 70/112 (62%), Positives = 85/112 (75%), Gaps = 3/112 (2%)
 Frame = +2

Query: 263 MTTTAVIGLSAGNRLLSSS-YYSDLTEKLSSSCDFGFTHHQVTCSRNVINAKKS-NYNPN 436
           M T AVIGLSAG RLLSS+ YYSDLTEKLSS+ + G TH+Q+T ++ +I AKKS NY P+
Sbjct: 1   MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPS 60

Query: 437 FLSS-RQTQSIKALKEHVDTASIPSKVEPWLPSSNHLEVETSNPDFSVDALL 589
           F SS R TQSIKALKEHVDTAS PS       + N +E E+S+ D+SV+ALL
Sbjct: 61  FPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALL 112


>ref|XP_002325882.1| predicted protein [Populus trichocarpa] gi|222862757|gb|EEF00264.1|
           predicted protein [Populus trichocarpa]
          Length = 509

 Score =  112 bits (281), Expect = 4e-23
 Identities = 67/112 (59%), Positives = 80/112 (71%), Gaps = 3/112 (2%)
 Frame = +2

Query: 263 MTTTAVIGLSAGNRLLSSS-YYSDLTEKLSSSCDFGFTHHQVTCSRNVINAKKS-NYNPN 436
           M T AVIGLS+G RLLSSS YYSDLTEKLS+  D G T++    ++NVI AKKS NY P+
Sbjct: 2   MATAAVIGLSSGKRLLSSSFYYSDLTEKLSNVNDHGITYYPTATTKNVIVAKKSSNYGPS 61

Query: 437 FLSS-RQTQSIKALKEHVDTASIPSKVEPWLPSSNHLEVETSNPDFSVDALL 589
           F SS R + SIKALKEHVDTAS  S V  W  + +  E E+S  D+SV+ALL
Sbjct: 62  FPSSNRNSHSIKALKEHVDTASASSNVATWFKTFDDFEEESSALDYSVEALL 113


>ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 503

 Score =  112 bits (280), Expect = 5e-23
 Identities = 68/114 (59%), Positives = 82/114 (71%), Gaps = 5/114 (4%)
 Frame = +2

Query: 263 MTTTAVIGLSAGNRLLSSSY-YSDLTEKLSSSCDFGFTHHQVTCSRNVINAKK-SNYNPN 436
           M T AVIGLS G RLLSSSY YSD+ EKLS   DFG TH+Q+  ++++I AKK SNY P 
Sbjct: 1   MATAAVIGLSGGKRLLSSSYHYSDIIEKLSYGSDFGSTHYQIVPTKSLIVAKKSSNYTPT 60

Query: 437 F-LSSRQTQSIKALKEHVDTASIPSKVEPWLPS--SNHLEVETSNPDFSVDALL 589
           F  S++Q QSIKALKEHVD A  P+  +PW  S  SN LEVE+S   +SV+ALL
Sbjct: 61  FPASNQQNQSIKALKEHVDDA--PTIADPWFQSYNSNDLEVESSEMGYSVEALL 112


>ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 503

 Score =  109 bits (272), Expect = 4e-22
 Identities = 67/114 (58%), Positives = 81/114 (71%), Gaps = 5/114 (4%)
 Frame = +2

Query: 263 MTTTAVIGLSAGNRLLSSSY-YSDLTEKLSSSCDFGFTHHQVTCSRNVINAKK-SNYNPN 436
           M T AVIGLS G RLLSSSY YSD+ EKLS   DFG TH+Q+  ++++I AKK SNY P 
Sbjct: 1   MATAAVIGLSGGKRLLSSSYHYSDVIEKLSYGSDFGSTHYQIVPTKSLIAAKKSSNYTPT 60

Query: 437 F-LSSRQTQSIKALKEHVDTASIPSKVEPWLPS--SNHLEVETSNPDFSVDALL 589
           F  S++Q QSIKALKEHVD A  P+  + W  S  SN LEVE+S   +SV+ALL
Sbjct: 61  FPASNQQNQSIKALKEHVDDA--PTIADSWFQSCNSNDLEVESSEMGYSVEALL 112


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  103 bits (256), Expect = 3e-20
 Identities = 59/111 (53%), Positives = 75/111 (67%), Gaps = 2/111 (1%)
 Frame = +2

Query: 263 MTTTAVIGLSAGNRLLSSS-YYSDLTEKLSSSCDFGFTHHQVTCSRNVINAKKSN-YNPN 436
           M+T AVIGLSAG RLLSSS YYSDL EKL+ + D     H V   +NVI AKKS+ Y+P+
Sbjct: 2   MSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSPS 61

Query: 437 FLSSRQTQSIKALKEHVDTASIPSKVEPWLPSSNHLEVETSNPDFSVDALL 589
            +SSR++QS K+LKEHVD  + PS V  W      L+ E+ + D SV+ LL
Sbjct: 62  CVSSRKSQSAKSLKEHVDITADPSDVPSWFEMYEQLQNESDDEDESVEVLL 112