BLASTX nr result

ID: Panax21_contig00008116 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00008116
         (596 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN67276.1| hypothetical protein VITISV_042515 [Vitis vinifera]   132   6e-29
ref|XP_002518086.1| conserved hypothetical protein [Ricinus comm...   131   1e-28
ref|XP_002265806.2| PREDICTED: ubiquitin carboxyl-terminal hydro...   130   1e-28
emb|CBI17307.3| unnamed protein product [Vitis vinifera]              119   4e-25
ref|XP_002300170.1| predicted protein [Populus trichocarpa] gi|2...   117   2e-24

>emb|CAN67276.1| hypothetical protein VITISV_042515 [Vitis vinifera]
          Length = 1036

 Score =  132 bits (331), Expect = 6e-29
 Identities = 90/231 (38%), Positives = 121/231 (52%), Gaps = 41/231 (17%)
 Frame = -2

Query: 589  IRDDQLSSSKDFPYYISSMNLSNGNNK---------KDLLDSSADRIVSSNGNIDGNQ-- 443
            +RD ++ +  + P  IS + ++   +K         KD+       I + N   DG+   
Sbjct: 729  LRDQRIKTRTNLPNTISKIQMNGSEDKIQNGPFGLCKDISPDEVKDIDNENVKNDGHNIL 788

Query: 442  -----------------NCTFESNQTAE*PPVASQLEEEKSEIN--------DSPQKLTC 338
                                 +++QT E  PV SQ E  KS++N         S    TC
Sbjct: 789  GGLAPHDRISDDDSKQNGLKLQTSQTVEVNPVVSQCEGGKSKMNYALPDLSHSSDTYKTC 848

Query: 337  NLES----SNDSCSVNESGSTEYNTNNVLQRESQFLIXXXXXXXXXXE-VDSKSIKVKRD 173
            +  S    ++DSCSV+E  S   NT    QR SQ L           + +DS+S+KVKRD
Sbjct: 849  SQASLSDPASDSCSVHEPNSVGCNTGK--QRNSQMLTGELESEEDEDKEMDSESVKVKRD 906

Query: 172  ATKRILIDKAPPILTIHLKRFSQDARGRISKLNGHVDFRDTFDLKPYMHPR 20
            ATKRILI+KAPPILTIHLKRFSQDARGR +KLNGHV F+D+ DL+P+M PR
Sbjct: 907  ATKRILINKAPPILTIHLKRFSQDARGRYNKLNGHVVFKDSIDLRPFMEPR 957


>ref|XP_002518086.1| conserved hypothetical protein [Ricinus communis]
            gi|223542682|gb|EEF44219.1| conserved hypothetical
            protein [Ricinus communis]
          Length = 1006

 Score =  131 bits (329), Expect = 1e-28
 Identities = 90/198 (45%), Positives = 111/198 (56%), Gaps = 14/198 (7%)
 Frame = -2

Query: 571  SSSKDFPYYISSMNLSNGNNKKDLLDSSADRIVSSNGNIDG-NQN-CTFESNQTAE*PPV 398
            S  KD    I   + + G N     +SS   +VS + NID  NQN    ES QT E  P+
Sbjct: 733  SLEKDNLCSIEVKDHNGGINTDTCFNSSGASLVSDDENIDRTNQNYIKTESGQTDELNPI 792

Query: 397  ASQLEEEKSEIN--------DSPQKLTCNLESSN----DSCSVNESGSTEYNTNNVLQRE 254
             +Q +E+K E+          S    +C+ ES +     S SV E  ST Y T      +
Sbjct: 793  ETQGDEQKGEMTVALMEQSLSSSTYKSCSQESFSCPVVGSSSVGEPSSTGYATAKDQMGD 852

Query: 253  SQFLIXXXXXXXXXXEVDSKSIKVKRDATKRILIDKAPPILTIHLKRFSQDARGRISKLN 74
            SQF            E  S+ +KVKRDATKR+L+DKAPPILTIHLKRFSQDARGR+SKLN
Sbjct: 853  SQF--SGNCGAKEDEEGTSRKVKVKRDATKRVLVDKAPPILTIHLKRFSQDARGRLSKLN 910

Query: 73   GHVDFRDTFDLKPYMHPR 20
            GHV+F D  DL+PYM PR
Sbjct: 911  GHVNFGDVLDLRPYMDPR 928


>ref|XP_002265806.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 1-like [Vitis
            vinifera]
          Length = 950

 Score =  130 bits (328), Expect = 1e-28
 Identities = 81/159 (50%), Positives = 102/159 (64%), Gaps = 14/159 (8%)
 Frame = -2

Query: 454  DGNQN-CTFESNQTAE*PPVASQLEEEKSEINDSPQKL--------TCNLES----SNDS 314
            D  QN    +++QT E  PV SQ E  KS++N +  +L        TC+  S    ++DS
Sbjct: 715  DSKQNGLKLQTSQTVEVNPVVSQCEGGKSKMNYALPELSHSSDTYKTCSQASLSDPASDS 774

Query: 313  CSVNESGSTEYNTNNVLQRESQFLIXXXXXXXXXXE-VDSKSIKVKRDATKRILIDKAPP 137
            CSV+E  S   NT    QR SQ L           + +DS+S+KVKRDATKRILI+KAPP
Sbjct: 775  CSVHEPNSVGCNTGK--QRNSQMLTGELESEEDEDKEMDSESVKVKRDATKRILINKAPP 832

Query: 136  ILTIHLKRFSQDARGRISKLNGHVDFRDTFDLKPYMHPR 20
            ILTIHLKRFSQDARGR +KLNGHV F+D+ DL+P+M PR
Sbjct: 833  ILTIHLKRFSQDARGRYNKLNGHVVFKDSIDLRPFMEPR 871


>emb|CBI17307.3| unnamed protein product [Vitis vinifera]
          Length = 473

 Score =  119 bits (298), Expect = 4e-25
 Identities = 69/134 (51%), Positives = 87/134 (64%), Gaps = 5/134 (3%)
 Frame = -2

Query: 406 PPVASQLEEEKSEINDSPQKLTCNLES----SNDSCSVNESGSTEYNTNNVLQRESQFLI 239
           P   S+++      + S    TC+  S    ++DSCSV+E  S   NT    QR SQ L 
Sbjct: 263 PNTISKIQMNGKLSHSSDTYKTCSQASLSDPASDSCSVHEPNSVGCNTGK--QRNSQMLT 320

Query: 238 XXXXXXXXXXE-VDSKSIKVKRDATKRILIDKAPPILTIHLKRFSQDARGRISKLNGHVD 62
                     + +DS+S+KVKRDATKRILI+KAPPILTIHLKRFSQDARGR +KLNGHV 
Sbjct: 321 GELESEEDEDKEMDSESVKVKRDATKRILINKAPPILTIHLKRFSQDARGRYNKLNGHVV 380

Query: 61  FRDTFDLKPYMHPR 20
           F+D+ DL+P+M PR
Sbjct: 381 FKDSIDLRPFMEPR 394


>ref|XP_002300170.1| predicted protein [Populus trichocarpa] gi|222847428|gb|EEE84975.1|
            predicted protein [Populus trichocarpa]
          Length = 925

 Score =  117 bits (292), Expect = 2e-24
 Identities = 67/135 (49%), Positives = 84/135 (62%)
 Frame = -2

Query: 424  NQTAE*PPVASQLEEEKSEINDSPQKLTCNLESSNDSCSVNESGSTEYNTNNVLQRESQF 245
            N+ ++  P AS   +E    +DS + L+       DSCSV+E+ ST Y      Q +  F
Sbjct: 714  NKQSKISPKASINGDETQIQSDSVKTLS---GPPVDSCSVDETSSTGYTMAKDEQTDCNF 770

Query: 244  LIXXXXXXXXXXEVDSKSIKVKRDATKRILIDKAPPILTIHLKRFSQDARGRISKLNGHV 65
                        +   K + VKRDATKR+LIDKAPPILT+HLKRFSQDARGR+SKLNGHV
Sbjct: 771  PGNCESDVNEDGDKTLKKLNVKRDATKRVLIDKAPPILTVHLKRFSQDARGRLSKLNGHV 830

Query: 64   DFRDTFDLKPYMHPR 20
            +FRD  DL+PYM PR
Sbjct: 831  NFRDVLDLRPYMDPR 845


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