BLASTX nr result

ID: Panax21_contig00008041 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00008041
         (467 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268...   111   5e-23
ref|XP_002515040.1| RNA binding protein, putative [Ricinus commu...    99   5e-19
emb|CBI16834.3| unnamed protein product [Vitis vinifera]               80   2e-13
ref|XP_002312652.1| predicted protein [Populus trichocarpa] gi|2...    74   1e-11
ref|XP_002315647.1| predicted protein [Populus trichocarpa] gi|2...    72   4e-11

>ref|XP_002282072.2| PREDICTED: uncharacterized protein LOC100268141 isoform 1 [Vitis
           vinifera] gi|359473133|ref|XP_003631251.1| PREDICTED:
           uncharacterized protein LOC100268141 isoform 2 [Vitis
           vinifera]
          Length = 647

 Score =  111 bits (278), Expect = 5e-23
 Identities = 51/67 (76%), Positives = 59/67 (88%)
 Frame = +2

Query: 257 MAEEQLDYEDDGYGGSQKMQYNGGGEISALAKDEVTGEEDEYDDLYSDVNVGQGFLQLQR 436
           MAEEQLDYED+ YGG+QKM + GGG ISALA DE+ GE+DEYDDLY+DVNVG+GFLQ+ R
Sbjct: 1   MAEEQLDYEDEEYGGAQKMPFQGGGAISALADDELMGEDDEYDDLYNDVNVGEGFLQMHR 60

Query: 437 SEAPVPS 457
           SEAP PS
Sbjct: 61  SEAPAPS 67


>ref|XP_002515040.1| RNA binding protein, putative [Ricinus communis]
           gi|223546091|gb|EEF47594.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 644

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 47/71 (66%), Positives = 60/71 (84%), Gaps = 2/71 (2%)
 Frame = +2

Query: 257 MAEEQLDYEDDGYGGSQKMQYNGGGEISALAKDEVTGEEDEYDDLYSDVNVGQGFLQLQR 436
           MA+EQ+DYED+ YGG+QK+QY G G I ALA++E+ GE+DEYDDLY+DVN+G+ FLQ+ R
Sbjct: 1   MADEQIDYEDEEYGGAQKLQYQGSGAIPALAEEEM-GEDDEYDDLYNDVNIGENFLQMHR 59

Query: 437 SEAP--VPSVG 463
           SEAP   PSVG
Sbjct: 60  SEAPPAPPSVG 70


>emb|CBI16834.3| unnamed protein product [Vitis vinifera]
          Length = 491

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 36/49 (73%), Positives = 42/49 (85%)
 Frame = +2

Query: 311 MQYNGGGEISALAKDEVTGEEDEYDDLYSDVNVGQGFLQLQRSEAPVPS 457
           M + GGG ISALA DE+ GE+DEYDDLY+DVNVG+GFLQ+ RSEAP PS
Sbjct: 1   MPFQGGGAISALADDELMGEDDEYDDLYNDVNVGEGFLQMHRSEAPAPS 49


>ref|XP_002312652.1| predicted protein [Populus trichocarpa] gi|222852472|gb|EEE90019.1|
           predicted protein [Populus trichocarpa]
          Length = 619

 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 37/65 (56%), Positives = 48/65 (73%)
 Frame = +2

Query: 272 LDYEDDGYGGSQKMQYNGGGEISALAKDEVTGEEDEYDDLYSDVNVGQGFLQLQRSEAPV 451
           +DYE++     +KMQY G G I ALA++E+ GE+DEYDDLY+DVNVG+ FLQ+  SEAP 
Sbjct: 1   MDYEEE-----EKMQYQGSGAIPALAEEEM-GEDDEYDDLYNDVNVGENFLQMHGSEAPA 54

Query: 452 PSVGV 466
           P   V
Sbjct: 55  PPATV 59


>ref|XP_002315647.1| predicted protein [Populus trichocarpa] gi|222864687|gb|EEF01818.1|
           predicted protein [Populus trichocarpa]
          Length = 573

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 35/61 (57%), Positives = 47/61 (77%)
 Frame = +2

Query: 272 LDYEDDGYGGSQKMQYNGGGEISALAKDEVTGEEDEYDDLYSDVNVGQGFLQLQRSEAPV 451
           +D+E++     +KMQY G G I ALA++E+ GE+DEYDDLY+DVNVG+ FLQ+  SEAP 
Sbjct: 1   MDFEEE-----EKMQYQGSGAIPALAEEEL-GEDDEYDDLYNDVNVGENFLQMHGSEAPA 54

Query: 452 P 454
           P
Sbjct: 55  P 55


Top