BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00008037
         (524 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABM55240.1| retrotransposon protein [Beta vulgaris]                 60   2e-07
gb|AAX96700.1| retrotransposon protein, putative, Ty3-gypsy sub-...    60   3e-07
gb|AAX96590.1| retrotransposon protein, putative, Ty3-gypsy sub-...    60   3e-07
gb|AAX96626.1| retrotransposon protein, putative, Ty3-gypsy sub-...    57   2e-06
ref|XP_002312663.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06

>gb|ABM55240.1| retrotransposon protein [Beta vulgaris]
          Length = 1501

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 45/143 (31%), Positives = 62/143 (43%), Gaps = 3/143 (2%)
 Frame = +3

Query: 105 CATCWKNHTGVCLKGKRV-CFNCGQEGHIAPNCFSQKKGAGFTCGSKDHMARDCXXXXXX 281
           C  C KNH G   KG+ V C  C ++GH    C++ K G G       + AR        
Sbjct: 257 CKFCDKNHPGKDCKGELVTCHYCQKKGHREYECYT-KHGKGLKIQGNGNQARPGSNQIGN 315

Query: 282 XXXXXXXXXXXXXXLTITGPAQSS--RPTARTFNMTVQDAVQSKDVVSGIIPINDINAYV 455
                                 S+  +P  + F M+  +A +S DVV+G   IN +    
Sbjct: 316 QGPKPGGQNNQGNHSRPAANDNSAQNKPAGKVFVMSHNEAERSADVVTGNFSINSVFVKT 375

Query: 456 LFDSGATCSFISDDFAKNLELLK 524
           LFDSGAT SFIS    K+L L++
Sbjct: 376 LFDSGATYSFISPSVLKSLGLVE 398


>gb|AAX96700.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
           sativa Japonica Group] gi|77550164|gb|ABA92961.1|
           retrotransposon protein, putative, Ty3-gypsy subclass
           [Oryza sativa Japonica Group]
          Length = 1071

 Score = 59.7 bits (143), Expect = 3e-07
 Identities = 52/174 (29%), Positives = 71/174 (40%), Gaps = 6/174 (3%)
 Frame = +3

Query: 6   GSNVGSNCQKRKWNENSTAXXXXXXXXXXXFEACATCWKNHTGVCLKGKR--VCFNCGQE 179
           GS+ G+  Q++ +N N  A               AT  +N      +G +  VCFNCG  
Sbjct: 364 GSSSGARPQRQFYNNN--AGNQSNDNCNMVTRPVATPTQNQPVRKEQGSKPGVCFNCGDP 421

Query: 180 GHIAPNCFSQKKGAGFTCGSKDHMARDCXXXXXXXXXXXXXXXXXXXXLTITGPAQSSR- 356
           GH A  C   ++                                       T PAQ++  
Sbjct: 422 GHYANKCPKAQR-------------------------------------VKTVPAQNNSN 444

Query: 357 ---PTARTFNMTVQDAVQSKDVVSGIIPINDINAYVLFDSGATCSFISDDFAKN 509
              P AR  ++T  +A  + DVV G+ P+N I+A VLFDSGAT SF S  FA N
Sbjct: 445 APAPKARVNHVTAAEAQNAPDVVLGMFPVNSISATVLFDSGATHSFFSKSFAGN 498


>gb|AAX96590.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
           sativa Japonica Group] gi|77550403|gb|ABA93200.1|
           retrotransposon protein, putative, Ty3-gypsy subclass
           [Oryza sativa Japonica Group]
          Length = 1640

 Score = 59.7 bits (143), Expect = 3e-07
 Identities = 38/118 (32%), Positives = 50/118 (42%)
 Frame = +3

Query: 156 VCFNCGQEGHIAPNCFSQKKGAGFTCGSKDHMARDCXXXXXXXXXXXXXXXXXXXXLTIT 335
           VCFNCG  GH A  C             K    ++                       + 
Sbjct: 632 VCFNCGDPGHYADKC------------PKPRCVKNAP---------------------VQ 658

Query: 336 GPAQSSRPTARTFNMTVQDAVQSKDVVSGIIPINDINAYVLFDSGATCSFISDDFAKN 509
             + +  P AR  ++ V +A  + DVV G  P+N I A+VLFDSGAT SF+S  FA N
Sbjct: 659 NNSNAPAPKARVNHVAVAEAQNAPDVVLGTFPVNSIPAFVLFDSGATHSFLSKSFASN 716


>gb|AAX96626.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
           sativa Japonica Group] gi|77550171|gb|ABA92968.1|
           retrotransposon protein, putative, Ty3-gypsy subclass
           [Oryza sativa Japonica Group]
          Length = 1045

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 39/122 (31%), Positives = 49/122 (40%), Gaps = 4/122 (3%)
 Frame = +3

Query: 156 VCFNCGQEGHIAPNCFSQKKGAGFTCGSKDHMARDCXXXXXXXXXXXXXXXXXXXXLTIT 335
           VCFNCG  GH A  C   ++                                       T
Sbjct: 204 VCFNCGDPGHYANKCPKPRR-------------------------------------VKT 226

Query: 336 GPAQSSR----PTARTFNMTVQDAVQSKDVVSGIIPINDINAYVLFDSGATCSFISDDFA 503
            P Q++     P AR  ++T  +A  + DVV G  P+N I   VLFDSGAT SF+S  FA
Sbjct: 227 APVQNNSNAPAPKARVNHVTAAEAQNAPDVVLGTFPVNTIPTTVLFDSGATHSFLSKSFA 286

Query: 504 KN 509
            N
Sbjct: 287 SN 288


>ref|XP_002312663.1| predicted protein [Populus trichocarpa] gi|222852483|gb|EEE90030.1|
           predicted protein [Populus trichocarpa]
          Length = 610

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 47/138 (34%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
 Frame = +3

Query: 105 CATCWKNHTG-VCLKGKRVCFNCGQEGHI---APNCFSQKKGAG-FTCGSKDHMARDCXX 269
           C +C   H G VC +    CF  GQ  H+    PN +  K GA   T  ++   A     
Sbjct: 332 CPSCGSRHYGTVCYRQTGACFGYGQTDHLLRDCPNKWWSKPGASPITSPTQTQSASHSVF 391

Query: 270 XXXXXXXXXXXXXXXXXXLTITGPAQSSRPTARTFNMTVQDAVQSKDVVSGIIPINDINA 449
                                 G A +S+  AR F +T QDA  S  VVSG + I    A
Sbjct: 392 QGGRGAGGRGQRGRGVGG---RGFAPASQGQARVFAITQQDAQTSNIVVSGTLLICSFEA 448

Query: 450 YVLFDSGATCSFISDDFA 503
            VLFD+GAT SF+S  FA
Sbjct: 449 RVLFDTGATHSFVSSYFA 466