BLASTX nr result

ID: Panax21_contig00004117 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00004117
         (676 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN78903.1| hypothetical protein VITISV_026451 [Vitis vinifera]    98   1e-18
ref|XP_002279117.1| PREDICTED: DEAD-box ATP-dependent RNA helica...    96   8e-18
ref|XP_002327540.1| predicted protein [Populus trichocarpa] gi|2...    95   1e-17
ref|XP_002527412.1| dead box ATP-dependent RNA helicase, putativ...    94   2e-17
ref|XP_004146825.1| PREDICTED: DEAD-box ATP-dependent RNA helica...    94   3e-17

>emb|CAN78903.1| hypothetical protein VITISV_026451 [Vitis vinifera]
          Length = 692

 Score = 98.2 bits (243), Expect = 1e-18
 Identities = 51/80 (63%), Positives = 58/80 (72%)
 Frame = +1

Query: 28  GSPKVTRTNDSFGSPRVTRTSWISRWFHLLVALGVEIVIATPGRLIDMLETHHTNLRRVT 207
           G+PK  +  D        +  W ++   + + LGVEIVIATPGRLIDMLE  HTNLRRVT
Sbjct: 406 GAPKGPQIRD-------LQRGWCTKILSIALMLGVEIVIATPGRLIDMLEAQHTNLRRVT 458

Query: 208 YLVLDEADRMLDMGFEPQIR 267
           YLVLDEADRMLDMGFEPQIR
Sbjct: 459 YLVLDEADRMLDMGFEPQIR 478


>ref|XP_002279117.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 20 [Vitis vinifera]
           gi|297743075|emb|CBI35942.3| unnamed protein product
           [Vitis vinifera]
          Length = 506

 Score = 95.5 bits (236), Expect = 8e-18
 Identities = 46/47 (97%), Positives = 47/47 (100%)
 Frame = +1

Query: 127 GVEIVIATPGRLIDMLETHHTNLRRVTYLVLDEADRMLDMGFEPQIR 267
           GVEIVIATPGRLIDMLE+HHTNLRRVTYLVLDEADRMLDMGFEPQIR
Sbjct: 223 GVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFEPQIR 269


>ref|XP_002327540.1| predicted protein [Populus trichocarpa] gi|222836094|gb|EEE74515.1|
           predicted protein [Populus trichocarpa]
          Length = 497

 Score = 94.7 bits (234), Expect = 1e-17
 Identities = 45/47 (95%), Positives = 47/47 (100%)
 Frame = +1

Query: 127 GVEIVIATPGRLIDMLETHHTNLRRVTYLVLDEADRMLDMGFEPQIR 267
           GVEIVIATPGRLIDM+E+HHTNLRRVTYLVLDEADRMLDMGFEPQIR
Sbjct: 214 GVEIVIATPGRLIDMMESHHTNLRRVTYLVLDEADRMLDMGFEPQIR 260


>ref|XP_002527412.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223533222|gb|EEF34978.1| dead box ATP-dependent RNA
           helicase, putative [Ricinus communis]
          Length = 505

 Score = 94.4 bits (233), Expect = 2e-17
 Identities = 45/47 (95%), Positives = 47/47 (100%)
 Frame = +1

Query: 127 GVEIVIATPGRLIDMLETHHTNLRRVTYLVLDEADRMLDMGFEPQIR 267
           GVEIVIATPGRLIDMLE+HHTNLRRVTYLVLDEADRMLDMGF+PQIR
Sbjct: 222 GVEIVIATPGRLIDMLESHHTNLRRVTYLVLDEADRMLDMGFDPQIR 268


>ref|XP_004146825.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 20-like [Cucumis
           sativus] gi|449476660|ref|XP_004154799.1| PREDICTED:
           DEAD-box ATP-dependent RNA helicase 20-like [Cucumis
           sativus]
          Length = 505

 Score = 93.6 bits (231), Expect = 3e-17
 Identities = 44/47 (93%), Positives = 47/47 (100%)
 Frame = +1

Query: 127 GVEIVIATPGRLIDMLETHHTNLRRVTYLVLDEADRMLDMGFEPQIR 267
           GVEIVIATPGRLIDM+E+HHTNLRRVTYLVLDEADRMLDMGF+PQIR
Sbjct: 222 GVEIVIATPGRLIDMMESHHTNLRRVTYLVLDEADRMLDMGFDPQIR 268


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